BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475116
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcripti... 2817 0.0
AT4G22070.1 | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding prot... 390 2e-107
> AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcription
factor | chr1:23016683-23019279 REVERSE LENGTH=1990
Length=1990
Score = 2817 bits (1525), Expect = 0.0
Identities = 1808/1939 (93%), Gaps = 41/1939 (2%)
Strand=Plus/Plus
Query 1 ACAGACTCTTTCTTAAtctctctctctctTTAAACCAAA-CCC-AAA-AACAATAATAT- 56
|||||||||||||||| ||||||||||||| ||||||| ||| ||| || || || ||
Sbjct 1 ACAGACTCTTTCTTAA--TCTCTCTCTCTTTCAACCAAACCCCTAAACAAAAAAAAAATA 58
Query 57 CAttttctgatctctctctaaaaatctttaatctcctttcgttaatctcgtgatcttctt 116
|||||||||| |||||||||||||| || ||||| |||||||||||||||||| || |
Sbjct 59 CATTTTCTGA--TCTCTCTAAAAATC-TT--TCTCC-TTCGTTAATCTCGTGATC-TC-T 110
Query 117 cttcttcttcttctATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 176
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 -TTC-T-TT-TTCTATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 166
Query 177 CTCGATCTTTTAAACCCTAATCGTATTACTCATAACAATCACCGACGTTTCTCAAATCCT 236
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 167 CTTGATCTTTTAAACCCTAATCGTATTTCTCATAAGAATCACCGACGTTTCTCAAATCCT 226
Query 237 TTGACGATGTCTAGAATTGACGAAGATGATGATCAGAAGACGAAAATATCAACCAACGGT 296
||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 227 TTGGCGATGTCTAGAATTGACGAAGAAGATGATCAGAAGACGAGAATATCAACCAACGGT 286
Query 297 AGTGAATTTAGGTTTCCCGTGAGTCTCTCCGGTATTCGTGATCGTGAAGATGATGATTTT 356
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 287 AGTGAATTTAGGTTTCCGGTGAGTCTCTCAGGTATTCGTGATCGTGAAGATGAAGATTTT 346
Query 357 TCATCTGGCGTCGCCGGAGATAATGACCGTGAAGTTCCCGGCGAGGTGGATTTCTTCTCC 416
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 347 TCATCTGGCGTTGCTGGAGATAATGACCGTGAAGTTCCCGGCGAAGTGGATTTCTTCTCC 406
Query 417 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGACGGATTTCGTGTTAAGAAGGAAGAA 476
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 407 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGAAGGATTTCGTGTGAAGAAGGAAGAA 466
Query 477 CAAGATGATCGAACGGATGTAAACACCGGTTTGAATCTTCGAACAACGGGTAATACAAAG 536
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 467 CAAGATGATCGAACGGACGTAAATACCGGTTTGAATCTTCGAACAACTGGTAATACAAAG 526
Query 537 AGTGATGAGTCAATGATCGACGATGGAGAATCTTCTGAAATGGAAGATAAGCGTGCGAAA 596
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 527 AGTGATGAGTCAATGATCGATGATGGAGAATCTTCCGAAATGGAAGATAAGCGTGCGAAA 586
Query 597 AATGAGTTGGTTAAGTTACAAGATGAGTTGAAGAAAATGACAATGGACAATCAAAAGCTT 656
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 587 AATGAGTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAGCTT 646
Query 657 AGAGAATTGCTTACACAAGTGAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 716
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGAGAATTGCTTACACAAGTTAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 706
Query 717 CTAATGCAGCAACAACAACAACAGAATAATAAGGTAATAGAGGCTGCTGAGAAACCTGAG 776
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 707 CTAATGCAGCAACAGCAACAACAGAACAATAAGGTAATAGAAGCTGCTGAGAAGCCTGAG 766
Query 777 GAGACGATAGTACCGAGGCAATTTATTGATTTAGGCCCTACAAGAGCAGTGGGCGAGGCC 836
|||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 767 GAGACGATAGTACCAAGGCAATTTATTGATTTAGGCCCTACGAGAGCAGTAGGTGAGGCC 826
Query 837 GAGGATGTATCGAATTCTTCATCCGAAGATAGAACTCGTTCAGGCGGTTCTTCTGCGGCC 896
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 827 GAGGATGTGTCAAATTCTTCATCCGAAGATAGAACTCGTTCGGGGGGTTCTTCTGCAGCC 886
Query 897 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGTCCCGAAACCGAGTCCAAC 956
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 887 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGCCCCGAAACTGAGTCCAAC 946
Query 957 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAATCCGCTGAAGCTACG 1016
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 947 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAAACCGCTGAAGCTACG 1006
Query 1017 ATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCATGATAAGCGATGGA 1076
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1007 ATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGATGATAAGCGATGGA 1066
Query 1077 TGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTTGTCCTCGGGCATAT 1136
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1067 TGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATAT 1126
Query 1137 TACCGCTGCACAATGGCCACGGGTTGTCCCGTTCGCAAACAGGTTCAACGTTGTGCGGAA 1196
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1127 TACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACGTTGCGCGGAA 1186
Query 1197 GACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1256
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1246
Query 1257 GCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAACATGTTGCTATCTGGATCAATG 1316
||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1247 GCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAACATGTTGCTATCCGGGTCAATG 1306
Query 1317 TCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1376
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1366
Query 1377 TCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCACCGTCACATTAGACCTC 1436
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1367 TCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAACCGTCACATTAGACCTC 1426
Query 1437 ACCCACTCACCACCGCCTTCTAATGGTTCCAACCCTTCCTCTTCCGCAGCCGCCACCAGC 1496
||||||||||| |||||| ||||||||||||| |||||||||||||| | || |||| |
Sbjct 1427 ACCCACTCACCTCCGCCTCCTAATGGTTCCAATCCTTCCTCTTCCGC-G--GCTACCAAC 1483
Query 1497 AACAACAACAAC-CACA-ACT-CATTGAT-GCAACGGCCGCAACAGCAAATGACGAATTT 1552
|||||| ||||| ||| | | || | ||||| | ||||||||||||||||| ||
Sbjct 1484 AACAACCACAACTCACTGA-TGCAGCGGCCGCAACAACAACAACAGCAAATGACGAACTT 1542
Query 1553 ACCCCCGGGTATGCTACCTCATGTAATAGGTCAAGCATTGTATAACCAATCCAAGTTCTC 1612
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1543 ACCTCCGGGAATGCTACCTCATGTAATAGGCCAGGCATTGTATAACCAATCCAAGTTCTC 1602
Query 1613 AGGGCTGCAGTTCTCCGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1672
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 GGGGCTGCAGTTCTCTGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1662
Query 1673 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1722
Query 1733 TATTTCTTCTATGATCAATGGTTCGAACCACCACGACGGCCAAGGAAACAACAAAAGTCA 1792
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 1723 TATTTCTTCTATGATCAATGGTACGAACCACCACGACGGCGAAGGAAACAACAAAAATCA 1782
Query 1793 ATAGAAAAATATTACAAttttttttt---t-t-t---ttttt---C-AACTGGGTTATAG 1840
|||||||||||||||| ||||||||| | | | ||||| | |||||||||||||
Sbjct 1783 ATAGAAAAATATTACATTTTTTTTTTGGGTATCTACATTTTTTTTCCAACTGGGTTATAG 1842
Query 1841 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCTTCTGTTTCGTACCAAAATTCCA 1900
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1843 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCT---GTTTCGTACCAAAATCCCA 1899
Query 1901 GTAAATATACAAAAGaaaa 1919
||||||||||||||| |||
Sbjct 1900 GTAAATATACAAAAGCAAA 1918
> AT4G22070.1 | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding protein
31 | chr4:11691378-11694392 REVERSE LENGTH=1778
Length=1778
Score = 390 bits (211), Expect = 2e-107
Identities = 371/449 (83%), Gaps = 8/449 (2%)
Strand=Plus/Plus
Query 1003 CCGCTGAAGCTACGATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCA 1062
|||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||| |||
Sbjct 982 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCCA 1041
Query 1063 TGATAAGCGATGGATGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTT 1122
||||||||||||||||||||||||||||||| || || || ||||||||||| || || |
Sbjct 1042 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 1101
Query 1123 GTCCTCGGGCATATTACCGCTGCACAATGGCCACG-GGTTGTCCCGTTCGCAAACAGGTT 1181
|||| ||||| ||||| || |||||||||||| | || ||||| |||||||| || ||
Sbjct 1102 GTCCGCGGGCTTATTATCGTTGCACAATGGCCG-GTGGATGTCCAGTTCGCAAGCAAGTG 1160
Query 1182 CAACGTTGTGCGGAAGACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCAT 1241
|| ||||| || ||||||||||| ||||| ||||| |||||||| |||||||| ||||||
Sbjct 1161 CAGCGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCAT 1220
Query 1242 CCGTTGCCGCCAGCCGCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAA-CATGTT 1300
|| | || |||||||| ||||||||| || || ||||| || || || || |||| |
Sbjct 1221 CCACTCCCACCAGCCGCTACGGCCATGGCCTCAACAACCACCGCAGCTGC-AAGCATGCT 1279
Query 1301 GCTATCTGGATCAATGTCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAG 1360
|| || || |||||||| |||||||| || | |||||||| ||||| | |||||| |
Sbjct 1280 CCTCTCGGGCTCAATGTCGAGTCAAGACGGTTTAATGAACCCAACAAACCTCCTAGCTCG 1339
Query 1361 GGCTGTTCTT-CCTTGCTCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCA 1419
||| | ||| ||||||||| |||||||||| ||||||||||||||||| || || ||||
Sbjct 1340 AGCTAT-CTTGCCTTGCTCCTCAAGCATGGCTACAATCTCAGCCTCCGCACCATT-CCCA 1397
Query 1420 -CCGTCACATTAGACCTCACCCACTCACC 1447
|| ||||||| ||||||||| | |||||
Sbjct 1398 ACCATCACATTGGACCTCACCAATTCACC 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5