BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475131
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62050.1 | Symbols: | Ankyrin repeat family protein | chr1:... 2122 0.0
> AT1G62050.1 | Symbols: | Ankyrin repeat family protein | chr1:22936127-22939024
REVERSE LENGTH=2221
Length=2221
Score = 2122 bits (1149), Expect = 0.0
Identities = 1278/1340 (95%), Gaps = 9/1340 (1%)
Strand=Plus/Plus
Query 42 gaagaagacgaagtagtagaagaagaagaagaaTCACAATCACTCTTATTGAGG-A---A 97
|||||||| |||| || |||||||||| ||||||||||||||||||| |||||| | |
Sbjct 61 GAAGAAGAAGAAGAAGAAGAAGAAGAATAAGAATCACAATCACTCTTTTTGAGGAAGTTA 120
Query 98 GTTAGATTCTCAATCTCGCCGGAAA-AATTATGGCTCGGCCTTCGTCGGCGTCTGCAACA 156
||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 121 GTTAGATTCTCAATCTCTCCGGAAACAATCATGGCTCGGCCTTCGTCGGCGTCTGCAACA 180
Query 157 ACGGCAATCAGACCGGAAGATTATTCTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGA 216
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGGCAATTAGACCGGAAGATTACTCTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGA 240
Query 217 GATCACGGTGCACTGACTCGTCTTCTCTCTTCCTTGCCGAAGTTAGGAGATCCTGAACAG 276
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GATCACGGTGCACTGACTCGTCTTCTCTCTTCCTTGCCGAAGCTAGGAGATCCTGAACAG 300
Query 277 ATCCGAACAGAATCTGACTCACTGAGTCAAGAACGAGTTGCGGATCAGATCTCCGCCGTG 336
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 301 ATCCGAACAGAATCCGACTCACTGAGTCAAGAGCGAGTCGCGGATCAGATCTCCGCCGTG 360
Query 337 CTTGACCGTCGCGACGTTCCTTCGCGCGAAACGCCTCTCCATTTGGCGGTTAGACTTGAT 396
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||
Sbjct 361 CTTGACCGTCGCGACGTTCCTTCACGCGAAACGCCTCTTCATCTGGCGGTTAGACTCGAC 420
Query 397 GATTTGTTCGCGGCGAGGGCGATTTCGTCAGCCGGAGGTGATATTTCGCTT-CAGAACGC 455
||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||| ||
Sbjct 421 GATTTGTTCGCGGCGAGGGCGATTTCGTCGGCCGGTGGTGATATTTCG-TTACAGAATGC 479
Query 456 TTCTGGATGGAATCCGTTACAGGAAGCGTTTTGTCGCCGGAATTCTGAGGTTATGAAAGT 515
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTGGATGGAATCCGTTACAAGAGGCGTTTTGTCGCCGGAATTCTGAGGTTATGAAAGT 539
Query 516 GCTTTTACGGCATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGATTACCTCGTTT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTTTTACGGCATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGATTACCTCGTTT 599
Query 576 AATCGCTGTTCTTCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTCCACTTCGAGAG 635
|| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 600 GATAGCTGTTCTCCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTTCATTTCGAGAG 659
Query 636 CTCTGTGATTCCGTTCGTCGGAAAAATCGCTCCCTCTGACACTTACAAGATCTGGAAACG 695
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 CTCTGTGATTCCGTTCGTCGGAAAAATCGCTCCCTCTGATACTTACAAGATCTGGAAACG 719
Query 696 CGACGGTAACCTCCGTGCTGATACTACTTTAGCTGGATTTGATGGTTTAAAAATTCAAAG 755
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 720 CGACGGTAACCTCCGTGCTGATACTACATTAGCCGGATTTGATGGTTTAAAAATTCAAAG 779
Query 756 AGCAGATCAAAGCTTTTTGTTCCTTGGTGATGGTGATGAATCTCTAGATATTGCTCCTGG 815
||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 780 AGCGGATCAAAGCTTTTTATTCCTCGGTGATGGTGATGAATCTCTAGATATTTCTCCTGG 839
Query 816 ATCTTTGCTTGTACTGAATCGAGATGATCGGAAAATTCTCGACGCTTTTGAAAGTGCCGG 875
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 ATCTTTGCTTGTACTGAATCGAGACGATCGGAAAATTCTCGACGCTTTTGAAAGTGCCGG 899
Query 876 AGCTCCGATTAGTGACTCCGATATCGCCGGATTCTGTTCTCAGTCTAGCTTGTATCGTCC 935
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 900 AGCTCCGATTAGTGACTCCGACATCGCCGGATTCTGTTCTCAGTCAAGCTTATATCGTCC 959
Query 936 GGGAATGGATGTTACTAAAGCAGAGCTCGTCGGAAGAACAAATTGGCGACGGCAAGAGAA 995
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 960 GGGAATGGATGTTACTAAAGCAGAGCTCGTCGGACGAACGAATTGGCGGCGGCAAGAGAA 1019
Query 996 GATGGAGAACGTCGGAGAATGGAAAGCTAGGGTTTATGAAATCCAGAAAGTGACATTTAG 1055
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GATGGAGAACGTCGGAGAATGGAAAGCTAGGGTTTACGAAATCCAGAAAGTGACATTTAG 1079
Query 1056 TTTCAGATCTCGGAAAATTGTTACCGGAGATGGAAGCGAACAAGTTTTACCGTTGGAGTT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTCAGATCTCGGAAAATTGTTACCGGAGATGGAAGCGAACAAGTTTTACCGTTGGAGTT 1139
Query 1116 AGACGAAGACGATGAAGGATTCTTAGTAGCTGAGAATCCGAGTTTTTTAGCTCCTCCGCC 1175
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 AGACGAAGACGATGAAGGATTCTTAGTAGCTGAGAATCCGAGTTTCTTAGCTCCTCCGCC 1199
Query 1176 ACGGTCACAGAGACGACACAGTAGCTTCGTTAAAGAAGATAGAGATTGGATCTCCGTTGG 1235
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 ACGGTCACAGAGACGACACAGTAGCTTTGTTAAAGAAGATAGAGATTGGATCTCCGTTGG 1259
Query 1236 GAGAAAAAGCGTCGACGTTTATCCATCCGCCGCACCACCACCGCCGCAGCAATCTCAATC 1295
|||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1260 GAGAAAAAGCGTCGACGTTTATCCCTCCGCCGCACCACCGCCGCCGCGGCAATCTCAATC 1319
Query 1296 ACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGATCAGTAGCTCAA-TACCAGC 1354
||||||||||||||||||||||||||||||||||||||| ||| | ||||| | |||||
Sbjct 1320 ACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGGTCAATGGCTCAGGT-CCAGC 1378
Query 1355 CACCGAGAAGATCAGTGGCT 1374
|||||||||||||||| |||
Sbjct 1379 CACCGAGAAGATCAGTAGCT 1398
Score = 1140 bits (617), Expect = 0.0
Identities = 755/819 (92%), Gaps = 19/819 (2%)
Strand=Plus/Plus
Query 1285 CAATCTCAATCACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGATCAGTAGCT 1344
|||| |||| ||||| |||| ||| || |||| | || |||||||||||||||||||||
Sbjct 1339 CAATTTCAACCACCGAGAAGGTCAATGGCTCAGGTCCAGCCACCGAGAAGATCAGTAGCT 1398
Query 1345 CAATACCAGCCACCGAGAAGATCAGTGGCTGTACCTTCAACGGTGTCTCCGGTGAATCCT 1404
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1399 CAAGCCCAGCCACCGAGAAGATCAGTGGCTCTACCTTCAACGGTGTCTCCGGTGAATCCT 1458
Query 1405 CCGCCGTCTCCTCATATTAAAGAGAAGGAATTCGTTAAGAGCTTGCATCCGTCAGTGTGG 1464
|| ||||||||||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct 1459 CCACCGTCTCCTCAGATCAAAGAGAAGGAATTTGTGAAAAGCTTGCATCCGTCAGTGTGG 1518
Query 1465 TTAACGGAACAGTTTCCGTTAAAAACGGAGGAGCTGCTTCCGTTACTTGACATTTTAGCT 1524
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TTAACGGAACAATTTCCGTTAAAAACGGAGGAGCTGCTTCCGTTACTTGACATTTTAGCT 1578
Query 1525 AATAAAGTCAAAGCCGTCGCCAGAATGCGTGATCTTCTCACCACCAAGTTCCCGCCGGGA 1584
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1579 AATAAAGTCAAAGCCGTCGCCAGAATGCGTGATCTTCTCACCACTAAGTTCCCGCCGGGA 1638
Query 1585 ACTTTTCCAGTCAAGCTGTCTATTCCGGTGGTCCCTACGGTCAAAGTAGTCATCACATTC 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 ACTTTTCCAGTCAAGCTGTCTATTCCGGTGGTCCCTACGGTCAAAGTAGTCATCACATTC 1698
Query 1645 ACCAAGTTCGTCGAGCTTCCCCCGGCGGAGACATTCTACACGCCGCTCTCAAGCCCAAGA 1704
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1699 ACCAAGTTTGTCGAGCTTCCGCCGGCGGAGACATTCTACACGCCGCTCTCAAGCCCAAGA 1758
Query 1705 TTCCTCTACTCCGCCGCTGCCG---AAGAAGACCAATCCGATGGCGAAAAAACTGATGCT 1761
||||||||||||||| | || | |||||||||| ||||||||||| ||| | ||||||
Sbjct 1759 TTCCTCTACTCCGCCACCGCGGGTGAAGAAGACCATTCCGATGGCGAGAAACCCGATGCT 1818
Query 1762 CGAAATTCGATTTCACGGCCATCTACGTGGCTGCGACTAGCCACCGGAAAAGGCTCACAT 1821
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1819 CGAAATTCGATTTCACGGCCATCGACGTGGCTGAGACTAGCCACCGGAAAAGGCTCACAT 1878
Query 1822 CGACGGATAGAGGAGGAGGAGCAACAAACGCCGGACCCATTTGCTATACCAATTGGGTAT 1881
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1879 CGACGGGTAGAAGAGGAGGAGCAACAAACGCCGGACCCATTCGCTATACCAATTGGGTAT 1938
Query 1882 AAATGGACAAGCATGAGTAGTAATAATAATAAGTCAGGTAATAATAGTAAAATGAAGAAA 1941
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1939 AAATGGACAAGCATGAGTAGTAGTAATAGTAAGTCAGGTAATAGTAGTAAAATGAAGAAA 1998
Query 1942 TCGAAGTCTACTAAGAGATCTAAGTAGTATCCTCTTTGAGGAATTAAAGATA----T--- 1994
|| ||||||||||||||| |||||||||||| ||||||||| |||||||||| |
Sbjct 1999 TCAAAGTCTACTAAGAGAACTAAGTAGTATCTTCTTTGAGGTATTAAAGATACGAATCAA 2058
Query 1995 -T--T-T---AGTGTAGATAATCTGATATTAGTAATATACAGAGAAACTGGTTGTAGTAt 2047
| | | ||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 2059 GTCCTCTTTTAGTGTAGATAATCTGATATTAGTAAAATACAGAGAAGCTGGTTGTAGTAT 2118
Query 2048 ttttttactatacattt-tatttttttCATATGATTAAA 2085
|| |||||||||||||| |||||||| ||||||||||||
Sbjct 2119 TTCTTTACTATACATTTATATTTTTT-CATATGATTAAA 2156
Score = 95.3 bits (51), Expect = 2e-18
Identities = 56/58 (97%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 1 GTAACATCCCATTTCCAAAAACATTCCGTTTCAGCTTCAA-Cgaagaagacgaagtag 57
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1 GTAACATCCCATTTCCAAAAACATTCCGTTTCAGCTTCAATCGAAGAAGACGAACTAG 58
Score = 80.5 bits (43), Expect = 6e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 2086 TTTTCGTCGGTCATGGTCTAAAAGAGTTCAATAATAAAAGCTT 2128
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 TTTTCGTCGGTCATGGTCTAAAAGAGTTCAATAATAAAAGCTT 2217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105521545590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5