BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475132

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily prote...   713    0.0  


> AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily protein 
| chr1:22932760-22934549 FORWARD LENGTH=720
Length=720

 Score =  713 bits (386),  Expect = 0.0
 Identities = 463/498 (93%), Gaps = 14/498 (3%)
 Strand=Plus/Plus

Query  125  TTCTTTAATCTCCATGGCTAATAGCTCTTTCAAGTTGGAACATCCACTGGAGAGGAGACA  184
            |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  52   TTCTTTAATCGCCATGGCTAATAGCTCTTTCAAGTTGGAACACCCACTAGAGAGGAGACA  111

Query  185  AATTGAATCTTCTCGCATCAGGGACAAGTATCCAGACAGAATTCCAGTGATTGTAGAGAG  244
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  112  AATTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAGAG  171

Query  245  AGCTGAAAGAAGTGATGTTCCGAATATCGATAAGAAAAAGTACCTTGTTCCGGCTGATCT  304
            ||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct  172  AGCTGAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT  231

Query  305  AACTGTGGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC  364
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC  291

Query  365  GATCTTCGT-TTTCGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT  423
             |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  TATCTTCGTCTTT-GTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT  350

Query  424  ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAAAACACCT  483
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  351  ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCT  410

Query  484  TTGGTTTGGTTTAA--GTGTGCCTTCCAATGCTTTTGTGCTTATGTGTATATTATGTGCT  541
            ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct  411  TTGGTTTGGTTTAAATGTGTGCCTTCCAATGCTTTTGTGCTGATGTGTATATTATATGCT  470

Query  542  CCTTTATGTATGACTATGAATATGCAAATGTTATTTTTACTGCTTTGGACTAATTAATGT  601
            | |||||  |  |||||||||||||||| ||||| | ||||       |||| |||||||
Sbjct  471  CTTTTATA-AC-ACTATGAATATGCAAAAGTTATATGTACT-------ACTA-TTAATGT  520

Query  602  AAATGTTGCTTTCAAttt  619
            |||||||||||| |||||
Sbjct  521  AAATGTTGCTTTGAATTT  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31346107728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5