BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475132 Length=649 Score E Sequences producing significant alignments: (Bits) Value AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily prote... 713 0.0 > AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932760-22934549 FORWARD LENGTH=720 Length=720 Score = 713 bits (386), Expect = 0.0 Identities = 463/498 (93%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 125 TTCTTTAATCTCCATGGCTAATAGCTCTTTCAAGTTGGAACATCCACTGGAGAGGAGACA 184 |||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 52 TTCTTTAATCGCCATGGCTAATAGCTCTTTCAAGTTGGAACACCCACTAGAGAGGAGACA 111 Query 185 AATTGAATCTTCTCGCATCAGGGACAAGTATCCAGACAGAATTCCAGTGATTGTAGAGAG 244 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 112 AATTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAGAG 171 Query 245 AGCTGAAAGAAGTGATGTTCCGAATATCGATAAGAAAAAGTACCTTGTTCCGGCTGATCT 304 ||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||| Sbjct 172 AGCTGAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231 Query 305 AACTGTGGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC 364 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC 291 Query 365 GATCTTCGT-TTTCGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT 423 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TATCTTCGTCTTT-GTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT 350 Query 424 ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAAAACACCT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 351 ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCT 410 Query 484 TTGGTTTGGTTTAA--GTGTGCCTTCCAATGCTTTTGTGCTTATGTGTATATTATGTGCT 541 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 411 TTGGTTTGGTTTAAATGTGTGCCTTCCAATGCTTTTGTGCTGATGTGTATATTATATGCT 470 Query 542 CCTTTATGTATGACTATGAATATGCAAATGTTATTTTTACTGCTTTGGACTAATTAATGT 601 | ||||| | |||||||||||||||| ||||| | |||| |||| ||||||| Sbjct 471 CTTTTATA-AC-ACTATGAATATGCAAAAGTTATATGTACT-------ACTA-TTAATGT 520 Query 602 AAATGTTGCTTTCAAttt 619 |||||||||||| ||||| Sbjct 521 AAATGTTGCTTTGAATTT 538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31346107728 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5