BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475136
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61990.1 | Symbols: | Mitochondrial transcription terminati... 1853 0.0
AT1G62120.1 | Symbols: | Mitochondrial transcription terminati... 760 0.0
AT1G61970.1 | Symbols: | Mitochondrial transcription terminati... 728 0.0
AT1G61980.1 | Symbols: | Mitochondrial transcription terminati... 713 0.0
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 634 0.0
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 532 3e-150
AT1G61960.1 | Symbols: | Mitochondrial transcription terminati... 514 9e-145
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 477 1e-133
AT1G62055.1 | Symbols: | pseudogene, hypothetical protein | ch... 267 3e-70
AT1G62490.1 | Symbols: | Mitochondrial transcription terminati... 244 1e-63
> AT1G61990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22911205-22912935 FORWARD
LENGTH=1731
Length=1731
Score = 1853 bits (1003), Expect = 0.0
Identities = 1289/1422 (91%), Gaps = 39/1422 (3%)
Strand=Plus/Plus
Query 1 AGTTGGGTCGGACTAGCTTTCAACATTGTAGCATTTGTTGCATTGATTTGTCCTTTGTCA 60
|||||||||||| |||||||||||| |||||||||||| || | ||||| ||||| |
Sbjct 195 AGTTGGGTCGGAATAGCTTTCAACACTGTAGCATTTGTAGC----A-TTGTCTTTTGTAA 249
Query 61 TGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCGAATTGCATAAATGGCGCCA-TTTG 119
||||||||||||||||||||||||||||||||||| ||| ||| |||| || | ||||
Sbjct 250 TGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCCAATCGCAGAAAT-GCTTGAGTTTG 308
Query 120 AGAT-TTGCTCTGCAAAATGCATCTCCTTTGTCCAATTCCTTCTCTTCTGCT-GCTGCTG 177
|| | || | |||||||||||| | ||||||||||||||||||||||||| | ||||
Sbjct 309 AG-TGTTTCAGTGCAAAATGCATTTGTTTTGTCCAATTCCTTCTCTTCTGCTAG-AGCTG 366
Query 178 CTGATGTGAGGTCA--AGAGATGGTCGAAAAGGAAAGAACTTTACGGTCTCTTACCTCGT 235
||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 367 CTGATGTGA-G-CATTAGAGATGGTCGAAAAGGGAAGAACTTTACAGTCTCTTACCTCGT 424
Query 236 TGATTCATTGGGTTTCA-CTACAAAGCTCGCTGAATCGATCTCAAGGAAAGTTCA--TTT 292
||||||||||||||| | ||| ||||||||||||||| ||||||||||||||| | |||
Sbjct 425 TGATTCATTGGGTTT-ATCTAAAAAGCTCGCTGAATCCATCTCAAGGAAAGTT-AGCTTT 482
Query 293 CACCGACAAGG-CAAATCCGGATTCTGTTCTGAGTCT-TTTGAGAAGTCATGGCTTCATA 350
| ||||||| | ||||| ||||||||||| ||||| ||| |||||| | || |||| |
Sbjct 483 GA-GGACAAGGTC-AATCCTGATTCTGTTCTAAGTCTGTTT-AGAAGTTACGGGTTCACA 539
Query 351 GATTCTCAGATCTCCT-GCATCATTACCGATTATCCAG-AATTGCTTATA-CTAGATGCT 407
||||||||||||| || ||||||||| |||||||| | ||||||| || | |||||||
Sbjct 540 GATTCTCAGATCT-CTACCATCATTACGGATTATCC-GTTATTGCTTGTAGC-AGATGCT 596
Query 408 GAGAAATCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGCTCTGA- 466
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGAAAGCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGCTCTGAG 656
Query 467 ACTCACTGAGATTGTTTCTACAGTTCCCAGAATCTTAGGAAGGAAATCTATCACTGTATA 526
| |||||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||
Sbjct 657 A-TCACTGAGATTGTTTCTACAGTACCGAGAATCTTAGGAAAGAAATCTATTACTGTATA 715
Query 527 CTATGATGCTGTCAAAGAAATTATAGTAGCCGATAAGAGTTCGAGTTATGAACTCCCACG 586
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 716 CTATGATGCTGTCAAAGACATTATAGTAGCCGATACGAGTTCGAGTTATGAACTCCCACA 775
Query 587 GGGTTCTCAGGGGAATAAAATCCGAAATGTATCTGTTTTGAGACAATTGGGCATGCC-TC 645
||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||| ||
Sbjct 776 GGGTTCTCAGGGGAATAAAATCCGAAATGTATCGGCTTTGAGAGAATTAGGCATGCCTTC 835
Query 646 AGT-GGTTGTTATTACCCTTGCTTGTCTCCAAATCGCAGCCTGTGTGTGGGAAAGAAAAT 704
| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 836 --TCGGTTGTTATTACCCTTGCTCGTCTCCAAATCGCAGCCTGTGTGTGGAAAAGAAAAT 893
Query 705 TTTGAAGAATCCCTCAAGAAGGTTGTTGAGATGGGTTTTGATCCCACCACTTC-AAAGTT 763
||||| | |||||| |||||||||||||||||||| |||||||||||||| | ||| ||
Sbjct 894 TTTGATGCATCCCTTAAGAAGGTTGTTGAGATGGGGTTTGATCCCACCACCACTAAA-TT 952
Query 764 TGTTGTAGCTTTGCGCATGCTTTACCAAATGAGCGAGAAAACGATTGAAGAAAAAGTTGT 823
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TGTTTTAGCTTTGCGGATGCTTTACCAAATGAGCGAGAAAACGATTGAAGAAAAAGTTGT 1012
Query 824 AGTCTATACAAGTGTAGGTTTTACTCTGGATGATGTATGGGAAATTTTCAAGAAGACTCC 883
||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 AGTCTTTAGAAGTTTAGGTTTTACTGTGGATGATGTATGGGAAATTTTCAAGAAGACTCC 1072
Query 884 TTCCGTTTTGAAAGTCTCCAAGAAGAAGATATTGAAGTCTGCTGAAACATTTCTAGCCCT 943
||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 1073 TTCTGTTTTGAAAGTCTCCAAGAAGAAGATATTGAAGTCGGCTGAAACGTTTCTAGACCT 1132
Query 944 AGGATATAGCAGAGCTGAGTTTTTGATGATGGTCAAGCGTTATCCTCCTTGCATTGAATA 1003
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1133 AGGATATAGCAGAGCTGAGTTTCTGATGATGGTTAAGCGTTATCCTCCTTGCATTGAATA 1192
Query 1004 TTCTCTAGAGTCGGTTAAAAGGAAGAATGAGTTTCTGGTGAAGAAGATGAATTGGCCACT 1063
|||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1193 TTCTGTAGAGTCTGTTAAAAAGAAGAATGAGTTTCTGGTGAAGAAGATGAAATGGCCACG 1252
Query 1064 AAATGCCTTGGTTTTGCACCCTCAGGTGTTTGGATACAGCATGGAGAAGAGGATTATACC 1123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AAACGCCTTGGTTTTGCACCCTCAGGTGTTTGGATACAGCATGGAGAAGAGGATTATACC 1312
Query 1124 AAGGTGTAACGTACTCAAAGTTCTCTTGTCGAAAGGACTGCTCAGAAAGAAAAGCGAACT 1183
|||||||||| ||||| ||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 1313 AAGGTGTAACATACTCGAAGCTCTCTTGTCGAAAGGACTGCTCAGAAAGGGAAGTGAACT 1372
Query 1184 ACCTGCCGTGTCCTCTGTTTTGTCGTGTACCGATGAAGGATTTTTAAATAGGTATGTGAT 1243
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1373 ACCTGCAGTGTCCTCTGTTTTGTCGTGTACCGATGAAGGATTTTTAGACAGGTATGTGAT 1432
Query 1244 GAAGCACAACGAGCTGGCGCCTACGTTGATGGCTATCTTCACCAAAGGTCGTGTTTCATA 1303
||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1433 GAAGCACAACGAGCTGGTGCCTACGTTGATGGCTATATTCACCAAAGGTAGTGTTTCATA 1492
Query 1304 GATCAAAAGGCACACCTACAACAATGAGCAATGCCAAGGTTTGTTCTTATTTTGTTGTTG 1363
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1493 GATCAGAAGGCACACCTACAACAATGAGCAGTGCCAAGGTTTGTTCTTATTTTGTTGTTG 1552
Query 1364 TCAGTTTTAGATCTGTCGATGGATCTTTTGATATGACAATGG 1405
|||||||||||| | | |||| ||||| |||| ||| |||||
Sbjct 1553 TCAGTTTTAGATTTCTAGATGAATCTTATGATGTGATAATGG 1594
> AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960191-22961779 REVERSE
LENGTH=1589
Length=1589
Score = 760 bits (411), Expect = 0.0
Identities = 1101/1414 (78%), Gaps = 128/1414 (9%)
Strand=Plus/Plus
Query 48 TTGTCCTTTGTCATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCGAATTGCATAAA 107
|||| |||||| |||||||||||||||||||||||||||| ||||||| | ||||| |||
Sbjct 130 TTGT-CTTTGTAATGTATTCTCTGATTCTCCATGGAAGAAAGTTGGTCCAGTTGCAGAAA 188
Query 108 TGGCGCCATTTGA--GATT---TG---C-TCTGCAAAATGCATCTCCTTTGTCCAATTCC 158
||||||||||||| | || || | | | ||||||| ||| |||| |||||| ||
Sbjct 189 TGGCGCCATTTGAGGGTTTCAGTGAATCTTTTTCAAAATGGATCAGCTTTTTCCAATACC 248
Query 159 TTCT-CT--TCTGCTGCTGCTGCTGATGTGAGGTCAAGAGATGGTCGAAAAGGAAAGAAC 215
|||| || |||||| ||||||||||||||| |||||||||||||||||||| | |||
Sbjct 249 TTCTCCTCCTCTGCTATTGCTGCTGATGTGAGCTCAAGAGATGGTCGAAAAGGTCACAAC 308
Query 216 TTTACGGTCTCTTACCTCGTTGATTCATTGGGTTTCA-CTACAAA-GCTCGCTGAATCGA 273
||||| || |||||||||||||||||||| ||||| | ||||||| | ||||||||||||
Sbjct 309 TTTACAGTTTCTTACCTCGTTGATTCATTAGGTTT-AGCTACAAAAG-TCGCTGAATCGA 366
Query 274 TCTCAAGGAAAGTTCA-TTTC-ACCGACAAGG-CAAATCCGGATTCTGTTCTGAGTCTTT 330
|||| | |||||| || |||| | |||||| ||| || |||||||||||||||||||
Sbjct 367 TCTCCATGAAAGT-CAGTTTCGATA-ACAAGGGCAAC-CCTGATTCTGTTCTGAGTCTTT 423
Query 331 TGAGAAGTCATGGCTTCA-TAGATTCTCAGATCTCCTGCATCATTACCGA-TTATCC-A- 386
||||||||||||| |||| | ||||||||||||||| |||||||| || || ||| |
Sbjct 424 TGAGAAGTCATGGGTTCACT-GATTCTCAGATCTCCAACATCATTAG-GACTT-TCCCAA 480
Query 387 GAATTGCTTATACTAGATGCTGAGAAATCACTTGGTCGCAAGCTTCAGATTCTGCAGTCT 446
|| |||||||| ||||||||||||||||| |||| || |||||||||| ||||||||||
Sbjct 481 GA-TTGCTTATCCTAGATGCTGAGAAATCCCTTGCTCCCAAGCTTCAGTTTCTGCAGTCC 539
Query 447 AGAGGAGCTTCAAGCTCTGAACTCACTGAGATTGTTTCTACAGTTCCCAGAATCTT---- 502
| ||| |||||||||||||| ||||| |||| ||||||| ||||||| | ||| ||
Sbjct 540 ATAGGTGCTTCAAGCTCTGAGCTCACCGAGACTGTTTCTGCAGTTCCGAAAATATTGGGG 599
Query 503 A-G-GAA-GG--AAATCTATCA-CTGTATACTATGATG-CTGTCAAAGAAATTATAGTAG 555
| | ||| || |||||| ||| | | |||||||||| | ||||||| ||||||| ||
Sbjct 600 AAGAGAAAGGGCAAATCTCTCAGCAG-ATACTATGATTTC-GTCAAAGTCATTATAGAAG 657
Query 556 CCGATAAGAGTTC---G--AG-----TTATGA-ACTC----CCACG-GGGTTCTCAG--G 597
| ||||||||||| | || ||||| | || ||| | |||| | || |
Sbjct 658 CGGATAAGAGTTCCAAGTTAGAAAAGTTATGTCATTCTTTGCCA-GAGGGTAGTAAGCAG 716
Query 598 G-GAATAAAATCCGAAATGTATCTGTT-TTGAGACAATTGGGCATGCCTCAGTGGTTGTT 655
| ||| |||||| ||||| ||| || | |||||| || |||| |||||||| |||||||
Sbjct 717 GAGAACAAAATCAGAAATTTAT-TGGTGTTGAGAGAAATGGGTGTGCCTCAGAGGTTGTT 775
Query 656 ATTACCC-TTGCTTGTCTCCAAAT-C-GCAGCCTGTGTGTGGGAAAGAAAATTTTGAAGA 712
||| | | |||||| | ||| | | | | || ||| ||||| |||||||| ||| ||||
Sbjct 776 ATT-CTCATTGCTTATATCCGA-TGCCGGAGA-TGTTTGTGGTAAAGAAAAATTTAAAGA 832
Query 713 ATCCCTCAAGAAGGTTGTTGAGATGGGTTTTGATCCCACCACTTCAAAGTTTGTTGTAGC 772
||| |||||||||| ||||||||| ||||||||||| ||||| ||| ||||| |||
Sbjct 833 ATCACTCAAGAAGGCTGTTGAGATTGGTTTTGATCCAACCACCGCAACTTTTGTCAAAGC 892
Query 773 T-TTG-CGCATGCTTTACCAAATGAGCGAGAAAACGA-TTGAAGAA-AAAGTTGTA-GTC 827
| || || | |||||| | | ||||| ||| || ||||| || ||| || | | |
Sbjct 893 TCTTAACGT-T-CTTTACGGATTAAGCGACAAAG-GAATTGAA-AATAAA-TTCAATGCC 947
Query 828 TATACAAGTGT-AGGTTTTACTCTGGATGATGTATGGGAAATTTTCAAGAAGACTCCTTC 886
| || ||| || ||| || || |||| |||||||||| ||| ||||||||| ||
Sbjct 948 TGTAAAAG-GTTAGGCTTGGCTGTGGACGATGTATGGGCAATGTTCAAGAAGTGGCCAAA 1006
Query 887 CGTTTTGA-AA-GTCTCCAAGAAGAAGATATTGAAGTCTGCTGAAACATTTCTAGCCCTA 944
| || ||| || |||| | |||||||||| ||| || | |||||||||||||| ||||
Sbjct 1007 CATTCTGACAAAGTCTG-A-GAAGAAGATAGAGAACTCCGTTGAAACATTTCTAGGCCTA 1064
Query 945 GGATAT-AGCAGAGCTGAGTTTTTGATGATGGTCAAGCGTTATCC-TCCTTGCATTGAAT 1002
|||| | ||||||| |||||||||||||||||||||||| | ||| || ||||||| ||
Sbjct 1065 GGAT-TCAGCAGAGATGAGTTTTTGATGATGGTCAAGCGAT-TCCCTCAGTGCATTGGAT 1122
Query 1003 ATTCT-CTAGAGTCGGTTAAAAGGAAGAATGAGTTTCTGGTGAAGAAGATGAATTGGCCA 1061
||||| | ||||| | | || | ||||| |||||||||||||| | ||||||||||||||
Sbjct 1123 ATTCTAC-AGAGTTGATGAAGACGAAGACTGAGTTTCTGGTGACGGAGATGAATTGGCCA 1181
Query 1062 CTAAATGCCT-TGGTTTTGCA--CCCTCAGGTGTTTGGATACAGCATGGAGAAGAGGATT 1118
||||| || | ||| || || ||||||||| | ||||||||| | |||||||||| |
Sbjct 1182 CTAAAGGC-TGTGGCTT--CAATCCCTCAGGTACTCGGATACAGCCTAGAGAAGAGGACT 1238
Query 1119 ATACCAAGGTGTAACGT-ACTCAAAGTTCTCTTGTCGAAAGGACTGCTCAGAAAGAAAAG 1177
| ||||||||||| || | ||||||||||| | || |||||| ||||| ||||| |
Sbjct 1239 GTCCCAAGGTGTAATGTTA-TCAAAGTTCTCATCTCAAAAGGATTGCTC-GAAAGT---G 1293
Query 1178 CGAACTACCTGCCG-TGTCCTCTGTTTTGTCGTGTACC-GATGAAG-GATTTTTAAATAG 1234
|||| ||| || | |||||||||||| | ||||| | ||| | | |||||| |||
Sbjct 1294 --AACTCCCT-CCAATATCCTCTGTTTTGACAAGTACCAG-TGAGGTG-TTTTTATATAT 1348
Query 1235 GTATGTGATGAAGCAC-A--AC--G-AGCTGGCGCCT-ACGTTGATGGCTATCTTCACCA 1287
|||||| | ||| || | || | |||| | | || | |||||||||||||||||||
Sbjct 1349 GTATGTTAGGAAACATGATGACAAGCAGCTTGTGGCTGA-GTTGATGGCTATCTTCACCG 1407
Query 1288 AAGGTCGTGTTTCA-T-A--GATCAAAAGGCACACCTACAACAATGAGCAATGCCAAGGT 1343
|| |||||||||| | | ||||| ||| ||| |||| |||||||||||| | |||||
Sbjct 1408 GAGATCGTGTTTCACTCACCGATCAGAAGACACGCCTAGAACAATGAGCAAAGTCAAGGA 1467
Query 1344 TTG-TTCTTATTTTGTTGT-TGTCAGTTTTAGAT 1375
| | || || ||||||| | ||| || |||||||
Sbjct 1468 TGGATTTTTTTTTTGTTTTCTGTTAGGTTTAGAT 1501
> AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904486-22907630 FORWARD
LENGTH=2848
Length=2848
Score = 728 bits (394), Expect = 0.0
Identities = 935/1183 (79%), Gaps = 90/1183 (8%)
Strand=Plus/Plus
Query 48 TTGTCCT-TTGTCATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGT-CGAATTGCATA 105
||| ||| ||||||||||| ||||||| |||||||||||||||||||| | | ||||| |
Sbjct 216 TTG-CCTGTTGTCATGTATGCTCTGATACTCCATGGAAGAAGGTTGGTAC-AGTTGCAGA 273
Query 106 AATGGCGCCA-TTTGAGAT-TTGCTCTGCAAAATGCATCTCCTTTGTCCAATTCCTTCTC 163
||||| | | ||| || | || | ||||||| ||||| ||| ||||||| ||||||
Sbjct 274 AATGGTGTAACTTT-AG-TCTTTCAGTGCAAAAGGCATCACCTACATCCAATTTCTTCTC 331
Query 164 TTCTGCTGCTGCTGC-TGATGTGAGGT-CAAGAGATGGTCGAAAAGGAAAGAACTTTACG 221
|||||| ||||||| || | ||| || | |||| ||||||||||||||| ||||||||
Sbjct 332 CTCTGCTTCTGCTGCGTG-TTTGA-GTCCTAGAGTTGGTCGAAAAGGAAACAACTTTACA 389
Query 222 GTCTCTTACCTCGTTGATTCATTGGGTTTCACTACAAAGCTCGCTGAATCGATCTCAAGG 281
||||||||||| |||||||||||||| || || ||||| ||||||||||| || ||| ||
Sbjct 390 GTCTCTTACCTTGTTGATTCATTGGGCTTAACCACAAAACTCGCTGAATCCATTTCACGG 449
Query 282 AAAGTTCA-TTTC-ACCGACAAGGCA-AATCCGGATTCTGTTCTGAGTCTTTTGAGAAGT 338
|| ||| | ||| | ||||| | | ||||| ||||||||||||| |||||||| ||||
Sbjct 450 AAGGTT-AGCTTCGA-GGACAA-GAACAATCCTGATTCTGTTCTGAATCTTTTGACAAGT 506
Query 339 CATGGCTTCATAGATTCTCAGATCTCCTGCATCATTACCGATTATCCAGAATTGCTTATA 398
||||| |||| || ||||||||||||| |||||||| ||||| ||| | |||||||||
Sbjct 507 CATGGGTTCACAGGTTCTCAGATCTCCACCATCATTAGGGATTACCCACAGTTGCTTATA 566
Query 399 -CTAGATGCTGAGAAATCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTC 457
| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 567 GC-AGATGCTGAGAAATCACTTGGTCCCAAGCTTCAGTTTTTGCAGTCTAGAGGAGCTTC 625
Query 458 AAGCTCTGAACTCACTGAGATTGTTTCTACAGTTCCCAGAA-TCTTAGGAA-G---G--- 509
|||||||||| ||||||||||||||||| ||||||| ||| | || |||| | |
Sbjct 626 AAGCTCTGAAATCACTGAGATTGTTTCTTCAGTTCCG-GAAATATTGGGAAAGAAAGGGC 684
Query 510 A-AAT-CTATCA-CTGTATACTATGATG-CTGTCAAAGAAATTATAGTAGCC-GATAAGA 564
| || |||||| | |||||||||||| | ||||||| | | | | || || ||||
Sbjct 685 ACAAAACTATCAGC-GTATACTATGATTTCA-TCAAAGACACT-T--T-GCTTGAGAAGA 738
Query 565 GTTC---GA--G-----TTATGA-ACTC----CCACGGGGTTCTCAGGGGAATAAAATCC 609
|||| || | ||||| | || |||| |||| || || ||| || |||
Sbjct 739 GTTCCAAGAACGAAAAGTTATGTCATTCTTTGCCACAGGGTAATCTGGAGAACAAGATCA 798
Query 610 GAAATGTATCTGTTTTGAGACAATTGGGCATGCCTCAGTGGTTGTTATTAC-CCTTGCTT 668
|||||||||| ||||| ||| ||||||| |||||||| ||||||||| | |||||||
Sbjct 799 GAAATGTATCGGTTTTAAGAGAATTGGGAATGCCTCACAAGTTGTTATT-CTCCTTGCTC 857
Query 669 GTCTCCAAATCGC-AGCCTGTGTGTGGGAAAGAAAATTTTGAAGAATCCCTCAAGAAGGT 727
||||| | | || | ||||| ||||| |||||||| ||||||||| |||||||||| ||
Sbjct 858 ATCTCCGA-TAGCCAACCTGTATGTGGAAAAGAAAAATTTGAAGAAACCCTCAAGAAAGT 916
Query 728 TGTTGAGATGGGTTTTGATCCCACCACTTCAAAGTTTGTTGTAGCTTTGCGCA-TGCTTT 786
||||||||||||||||||||| ||||| ||||||||||| | |||| | | | | |||
Sbjct 917 TGTTGAGATGGGTTTTGATCCTACCACCTCAAAGTTTGTCGAAGCTCTACA-AGTTATTT 975
Query 787 ACCAAATGAGCGAGAAAACGATTGAAGAAAAAGTTG-TAGTCTATACAAG-TGTAGGTTT 844
|| |||||| ||||||||| || ||||||||||| | |||||| ||| | |||| ||
Sbjct 976 ACAAAATGAACGAGAAAACAATCGAAGAAAAAGTCCATC-TCTATAAAAGCT-TAGGCTT 1033
Query 845 T-ACTCTGG-ATGATGTATGGGAAA-TTTTCAAGAAGACTCCT-TC-CGTTTTGAAAGTC 899
| | | ||| | ||||||||| || |||| || ||| || || || | || |||
Sbjct 1034 TGA-TGTGGGA-GATGTATGGTCAAGTTTTAAA-AAGTGGCCAATCTCGCT--GAGAGTA 1088
Query 900 TCCAAGAAGAAGATATTGAAGTCTGCTGAAACATTTCTAGCCCTAGGATAT-AGCAGAGC 958
|| |||||||||| ||| | || |||||||||||| | |||||||| | |||||||
Sbjct 1089 TCGGAGAAGAAGATGTTGGACTCCATTGAAACATTTCTTGGCCTAGGAT-TCAGCAGAGA 1147
Query 959 TGAGTTTTTGATGATGGTCAAGCG-TTATCCTCCTTGCATTGAAT-ATTCT-CTAGAGTC 1015
||||||| | ||||||||||| || |||||| ||||||| || || || | |||| |
Sbjct 1148 TGAGTTTGCCAAGATGGTCAAGCACTT-TCCTCCGTGCATTGGATTAT-CTAC-AGAGAC 1204
Query 1016 GGTTAAAAGGAAGAA-TGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAATGCC-TTG 1073
||| |||| ||| || |||||||||||||||||||||||||||||||||||| || |||
Sbjct 1205 GGTCAAAAAGAA-AACTGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAAGGCTGTTG 1263
Query 1074 GTTTTGCACCCT-CAGGTGTTTGGATACAGCATGGAGAAGAGGATTATACCAAGGTGTAA 1132
||| ||||| | ||| |||||||| ||| |||||||||||||| | |||||| ||||
Sbjct 1264 -TTTCAAACCCTGC-GGTATTTGGATATAGCCTGGAGAAGAGGATTGTTCCAAGGGGTAA 1321
Query 1133 CGTACTCAAAGTTCTCTTGTCGAAAGGACTGCTCAGAAA-GAA 1174
|||| |||||| |||| |||| |||||| || | ||||| |||
Sbjct 1322 CGTAATCAAAGCTCTCATGTCCAAAGGATTGATGAGAAATGAA 1364
> AT1G61980.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22908045-22909588 FORWARD
LENGTH=1544
Length=1544
Score = 713 bits (386), Expect = 0.0
Identities = 933/1182 (79%), Gaps = 97/1182 (8%)
Strand=Plus/Plus
Query 48 TTGTCCTT-TGTCATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCGAATTGCATAA 106
|||| ||| |||||||||||||||||||| |||||||||||| |||||||| || || ||
Sbjct 106 TTGT-CTTCTGTCATGTATTCTCTGATTCGCCATGGAAGAAGTTTGGTCGAGTTACAGAA 164
Query 107 ATGGCGCCATTTGAGA-TTTGCT-CTGCAAAATGCATCTCCTTTGTCCAATTCCTTCTCT 164
|||||| ||||||||| ||| | ||||||| || |||||||||||||||||||||||
Sbjct 165 ATGGCGTCATTTGAGAGTTT--TAGTGCAAAAGGCGTCTCCTTTGTCCAATTCCTTCTCC 222
Query 165 TCTGCTGCTGCTGCTG-ATGTGAGGT-CAAGAGATGGTCGAAAAGGAAAGAACTTTACGG 222
|||||| ||||||| | | ||| || | |||| |||||||||||| |||| |||||| |
Sbjct 223 TCTGCTTCTGCTGC-GCGTTTGA-GTCCTAGAGTTGGTCGAAAAGGTAAGAGCTTTACAG 280
Query 223 TCTCTTACCTCGTTGATTCATTGGGTTT-CACTACAAAGCTCGCTGAATCGATCTCAAGG 281
|||||||||||||||||||||||||||| | | | |||||||||||||||| ||||||||
Sbjct 281 TCTCTTACCTCGTTGATTCATTGGGTTTACCCAA-AAAGCTCGCTGAATCGGTCTCAAGG 339
Query 282 AAAGTTCAT-TTC-ACCGACAAGG-CAAATCCGGATTCTGTTCTGAGTCTTTTGAGAAGT 338
|| ||| | ||| | ||||||| ||| || || |||||||||| |||||||||||||
Sbjct 340 AAGGTT-AGCTTCGAG-GACAAGGACAAC-CCTGACTCTGTTCTGAATCTTTTGAGAAGT 396
Query 339 CATGGCTTCA-TAGATTCTCAGATCTCCTGCATCATTACCGATTATCCAGAATTGCTTAT 397
||||| |||| | ||||||||||||||| |||| |||| ||||||||| |||||||| |
Sbjct 397 CATGGGTTCACT-GATTCTCAGATCTCCACCATCGTTACGGATTATCCACAATTGCTTGT 455
Query 398 A-CTAGATGCTGAGAAATCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTT 456
| || ||||||||||||||||||| || |||||||||| || ||||||||||||||||||
Sbjct 456 AGCT-GATGCTGAGAAATCACTTGCTCCCAAGCTTCAGTTTTTGCAGTCTAGAGGAGCTT 514
Query 457 CAAGCTCTGAACTCACTGAGATTGTTTCTACAGTTCCCAGAATCTTAGGAA-G-GA---- 510
|||||||||| |||||||||||||||||||||||||| | |||||| |||| | ||
Sbjct 515 CAAGCTCTGAGCTCACTGAGATTGTTTCTACAGTTCCTAAAATCTTGGGAAAGAGAGGCC 574
Query 511 A-AT--CTATCA-CTGTATACTATGATG-CTGTCAAAGAAA-TT-A-TAG-TA-GCCGAT 560
| | |||||| | |||| ||||||| | ||||||||| || | | | || | | |
Sbjct 575 ACAAAACTATCAGC-GTATTCTATGATTTCA-TCAAAGAAACTTTACTTGATAAGA-GTT 631
Query 561 A-AGAGTTCGA---GTTATG--AAC-TC--CCACGGGGTTCTCAGGGGAATAAAATCCGA 611
| ||| ||| || ||| ||| | |||| |||| || || ||| || ||| ||
Sbjct 632 CCA-AGTCCGAAAAGTCATGTCAACCTTTTCCACAGGGTAATCTGGAGAACAAGATCAGA 690
Query 612 AATGTATCTGTTTTGAGACAATTGGGCATGCCTCAGTGGTTGTTATTACCCTTGCTTGTC 671
||| |||||||||||||| ||||||| |||||||| ||||||||| |||||||| ||
Sbjct 691 AATTTATCTGTTTTGAGAGAATTGGGGATGCCTCACAAGTTGTTATTCCCCTTGCTCATC 750
Query 672 TCCAA--ATCGCAGCCTGTGTGTGGG-AAAGAAAATTTTGAAGAATCCCTCAAGAAGGTT 728
|| | || | ||||| | | || |||||||| |||||||||||||||||||| |||
Sbjct 751 TCTTGTGA-CGTA-CCTGTCT-TCGGTAAAGAAAAATTTGAAGAATCCCTCAAGAAAGTT 807
Query 729 GTTGAGATGGGTTTTGATCCCA-CCACTTCAAAGTTTGTTGTAGCTTTGCGCAT-GCTTT 786
|||||||||||||||||||| | |||| ||||||||||| | ||||||| || | | ||
Sbjct 808 GTTGAGATGGGTTTTGATCC-ATCCACCTCAAAGTTTGTGGAAGCTTTGTGCGTTG-TTC 865
Query 787 ACCAA-AT-GAGCGAGAAAA-CGATTGAAGAAAAAGTTG-TAGTC-TATACAAGTGT-AG 840
| || || |||||| |||| | || ||||| ||||| | | | |||| ||| || ||
Sbjct 866 A--AAGATTGAGCGACAAAAAC-ATAGAAGATAAAGTCAAT-G-CGTATAAAAG-GTTAG 919
Query 841 GTTTT-ACTCTGGA-TGATGTATGGGAAATT-TTCAAGAAGACTCCTTCCGTTT-TGAAA 896
| ||| | | |||| | |||||||| | | | ||||||| | || | ||| ||| |
Sbjct 920 GCTTTGA-TGTGGAAT-ATGTATGG-ACAGTGTTCAAGAGGTGGCCAAAC-TTTCTGACA 975
Query 897 GTCTCCAAGAAGAAGATATTGAAGTCTGCTGAAACATTTCTAGCCCTAGGATAT-AGCAG 955
||| |||||||||||||||| | |||||||||||||| |||||| | | |||||
Sbjct 976 CACTCGGAGAAGAAGATATTGAACACCATTGAAACATTTCTAGGCCTAGGGT-TCAGCAG 1034
Query 956 AGCTGAGTTTTT-GATGATGGTCAAGCG-TTATCCTCCTTGCATTGAAT-ATTCTCT-AG 1011
|| ||||||| | || | | ||||| || ||||| |||||| || || | | ||
Sbjct 1035 AGATGAGTTTAGCG-TGTTAATTAAGCGCTT-TCCTCAGGGCATTGGATTATCCGCGGAG 1092
Query 1012 AGTCGGTTAAAAGGAAGAATGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAATGC-C 1070
| | |||||||| ||||| ||||||| |||| ||||||||||||||||||||||| || |
Sbjct 1093 A-T-GGTTAAAAAGAAGACTGAGTTTTTGGTAAAGAAGATGAATTGGCCACTAAAGGCTC 1150
Query 1071 TTGGTTTTGCACCCT-CAGGTGTTTGGATACAGCATGGAGAAGAGGATTATACCAAGGTG 1129
||| ||| ||||| | |||| ||||||||||| | |||||||||| | | |||||| |
Sbjct 1151 TTG-TTTCAAACCCTGC-GGTGCTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGGG 1208
Query 1130 TAACGTACT-CAAAGTTCTCTTGTCGAAAGGACTGCTCAGAA 1170
||||||| | ||| | |||| | || || ||| || || |||
Sbjct 1209 TAACGTAGTTCAA-GCTCTCATCTCCAAGGGATTGATCGGAA 1249
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 634 bits (343), Expect = 0.0
Identities = 734/911 (81%), Gaps = 73/911 (8%)
Strand=Plus/Plus
Query 53 CTTTGTCATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGT-CGAATTGCATAAATGGC 111
|||||||||||||||| |||| |||||||||||||||||||| | | ||||| |||||||
Sbjct 223 CTTTGTCATGTATTCTGTGATACTCCATGGAAGAAGGTTGGTAC-AGTTGCAGAAATGGC 281
Query 112 GCCATTTGAGATTTGCTCTGCAAAATGCATCTCCTTTGTCCAATTCCT-TCTCTTCTGCT 170
| ||||||||||||| | ||||||||| ||| |||| || ||||||| | |||||||||
Sbjct 282 GTCATTTGAGATTTGTTGTGCAAAATGGATCAGCTTTTTCTAATTCCTAT-TCTTCTGCT 340
Query 171 -GCTGCTGCTGATGTGAGGTCAAGAGATGGTCGAAAAG-GAAAGAACTTTACGGTCTCTT 228
| |||| ||||| |||| ||||||||||||||||||| | ||||||||||| |||||||
Sbjct 341 AG-TGCTACTGATTTGAGCTCAAGAGATGGTCGAAAAGTG-AAGAACTTTACTGTCTCTT 398
Query 229 ACCTCGTTGATTCATTGGGTTTCA-CTACAAAGCTCGCTGAATCGATCTCAAGGAAAGTT 287
|||||||||||||||||||||| | ||||||| ||||||||||| ||||||| ||||||
Sbjct 399 ACCTCGTTGATTCATTGGGTTT-AGCTACAAAACTCGCTGAATCAATCTCAAAGAAAGT- 456
Query 288 CA-TTTCACCGA-CAAGG-CAAATCCGGATTCT-GTTCTGAGTCTTTTGAGAAGTCATGG 343
|| |||| || ||||| ||| ||| |||| | |||||||||||||| |||||| ||||
Sbjct 457 CAGTTTCGT-GAACAAGGGCAA-TCCTGATT-TAGTTCTGAGTCTTTTTAGAAGTTATGG 513
Query 344 CTTCATAGATTCTCAGATCTCCTGCATCATTACCGATTATCC-AGAATTGCTTATACTAG 402
|||| | |||||||||||||| |||||||||| |||||||| ||| |||||| || |||
Sbjct 514 GTTCACAAATTCTCAGATCTCCAGCATCATTACGGATTATCCTAGA-TTGCTTCTAATAG 572
Query 403 ATGCTGAGAAATCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGCT 462
|||||||||||||||||| | |||||||||| || || ||||||||||||||||||||
Sbjct 573 ATGCTGAGAAATCACTTGATATCAAGCTTCAGTTTTTGGAGTCTAGAGGAGCTTCAAGCC 632
Query 463 CTGAACTCACTGAGATTGTTTCTACAGTTCCCAGAATCTTAGGAAGGAAATCT--A---T 517
|||| |||||| ||||||||||||||||||| | ||| || |||| |||| | |
Sbjct 633 CTGAGCTCACTCAGATTGTTTCTACAGTTCCTAAAATATTGGGAATGAAAGAGGGAAAGT 692
Query 518 CACT-GT-A--TACTATGATG-CTGTCAAAGAAATTATAGTAGCCGATAAGAGTTC---G 569
| || | | ||||||||| | |||||||| ||||||| ||| ||||||||||| |
Sbjct 693 CTCTAGGCAGATACTATGATTTC-GTCAAAGAGATTATAGAAGCAGATAAGAGTTCCAAG 751
Query 570 -A-G----TTA-TG--AAC-TC--CCACGGGGTTC-T---CAGGGGAATAAAATCCGAAA 613
| | || || ||| | ||| | || | | ||||| ||||||||| ||||
Sbjct 752 TACGAAACTTTGTGTCAACCTTTGCCA-GAGGCTAATAGGCAGGGTAATAAAATCAGAAA 810
Query 614 TGTATCTGTT-TT-GAGACAATTGGGCATGCCTCAGTGGTTGTTATTAC-CCTTGCTTGT 670
||| || ||| || ||||| ||||| |||||||| ||||||||| | ||||||| |
Sbjct 811 TGTTTCGGTTCTTAGAGAC--TTGGGTGTGCCTCAGAAGTTGTTATT-CTCCTTGCTCAT 867
Query 671 CTCCAAAT-CGCAGCCTGTGTGTGGGAAAGAAAATTTTGAAGAATCCCTCAAGAAGGTTG 729
||| | | | || ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 868 CTCTGA-TGCCCAACCTGTTTGTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAGGTTG 926
Query 730 TTGAGATGGGTTTTGATCCCACCACTTCAAAGTTTGTTGTAGCT-TT-GCGCATGCTTTA 787
||||||||||||||||||| ||||| ||||||||||| |||| || | || || ||||
Sbjct 927 TTGAGATGGGTTTTGATCCAACCACCTCAAAGTTTGTCCAAGCTCTTAGGGC-TG-TTTA 984
Query 788 CCAAATG-AGCGAGAAAACGATTGAAGAAAAAGTTG-TAGTCTATACAAGTGTA-GGTTT 844
| | || | ||| ||||| || ||||||| |||| | || |||| ||| || || ||
Sbjct 985 C-AGATTCACCGACAAAACAATAGAAGAAAGAGTTAAT-GTGTATA-AAGGGTTCGGCTT 1041
Query 845 TACTCTGGATGATGTATGGGAAATTTTCAAGAAGAC-TCCTTCCGTTTTGAA-AGTCTCC 902
| || |||| |||||||||| ||| |||||||| | ||||| | ||||||| ||| ||
Sbjct 1042 TGCTGTGGAAGATGTATGGGCAATGTTCAAGAA-ATGTCCTTACTTTTTGAATAGT-TCG 1099
Query 903 AAGAAGAAGAT 913
||||||||||
Sbjct 1100 GAGAAGAAGAT 1110
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 532 bits (288), Expect = 3e-150
Identities = 719/914 (79%), Gaps = 82/914 (9%)
Strand=Plus/Plus
Query 60 ATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCGAATTGCATAAATGGCGCCATTTG 119
|||||||||||||| |||||||||| |||||||||| | ||| | ||||| || |||||
Sbjct 1 ATGTATTCTCTGATACTCCATGGAAAAAGGTTGGTCCAGTTGAAGAAATGTCGTCATTTA 60
Query 120 AG-ATT----TG---CT-CTGC-AAAATGCATCTCCTTTGTCCAATTCCTTCTCTTCTGC 169
|| || || || || | |||| ||||||||||| |||||||||||||| | |||
Sbjct 61 AGCGTTCCAGTGAACCTCCT-CGAAAAGGCATCTCCTTTTTCCAATTCCTTCTCCTATGC 119
Query 170 TGCTGCTGCTGATGTGAGGTC-AAGAGATGGTCGAAAAGGAAAGAACTTTACGGTCTCTT 228
| |||| | |||| || | | |||| |||||||||||| || ||| | |||||||
Sbjct 120 TAATGCTACAGATGCGA-GCCTTAGAGCTGGTCGAAAAGGGTTGAGTTTTTCTGTCTCTT 178
Query 229 ACCTCGTTGATTCATTGGGTTTCAC-TACAAAGCTCGCTGAATCGATCTCAAGGAAAGTT 287
|||||||||||||||||||||| || || |||| |||| ||||||||||||| ||||||
Sbjct 179 ACCTCGTTGATTCATTGGGTTT-ACCTAAAAAGGTCGCAGAATCGATCTCAAAGAAAGT- 236
Query 288 CAT-TTC-ACCGACAA-GGCAAATCCGGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGC 344
|| ||| | ||||| ||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 237 CAGCTTCGAG-GACAAAGGCAA-TCCTGATTCTGTTCTGAGTCTATTGAGAAGTCATGGG 294
Query 345 TTCA-TAGATTCTCAGATCTCCTGCATCATTACCGATTATCCAGAATTGCTTA-TA-CTA 401
|||| | |||||||||||||| |||||||||| ||||||||| ||||||| | || ||
Sbjct 295 TTCACT-GATTCTCAGATCTCAAGCATCATTACGGATTATCCACAATTGCT-AGTAGCT- 351
Query 402 GATGCTGAGAAATCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGC 461
||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 352 GATGCTGAGAAATCAATTGGTCCCAAGCTTCAGTTTCTGCAGTCCAGAGGAGCTTCAAGG 411
Query 462 TCTGAACTCACTGAGATTGTTTCTACAGTTCCCAGAA-TCTTAGG-AAG-GA----A-AT 513
||||| |||||| | ||||| ||||||||||| ||| |||| || ||| || | |
Sbjct 412 TCTGAGCTCACTCATATTGTATCTACAGTTCCT-GAAATCTTGGGGAAGAGAGGGGACAA 470
Query 514 --CTATCA-CTGTATACTATGATGCTGTCAAAGAAATTATAGTAGCCGATAAGAGTTC-- 568
|||||| | ||||||||||| ||| ||||| ||||||| ||| |||||||||||
Sbjct 471 AACTATCAGCA-TATACTATGATTTTGTTAAAGAGATTATAGAAGCGGATAAGAGTTCCA 529
Query 569 -G----A---GTTATGA-ACTC----CCACG-GGGTTCTCAG--GG-GAATAAAATCCGA 611
| | |||||| | || ||| | |||| | || || ||| |||||| ||
Sbjct 530 AGTTCGAAAAGTTATGTCATTCTTTGCCA-GAGGGTAGTAAGCAGGAGAACAAAATCAGA 588
Query 612 AATGTATCTG-TTTTGAGACAATTGGGCATGCCTCAGTGGTTGTTATTACCC-TTGCTTG 669
||||| | || |||||||| ||||||| | ||||| ||||||| || ||| ||||||
Sbjct 589 AATGTTT-TGGTTTTGAGAGAATTGGGTGTTCCTCAAAGGTTGTTGTT-CCCATTGCTTA 646
Query 670 TCTCCAAATCGC-AGCCTGTGTGTGGGAAAGAAAATTTTGAAGAATCCCTCAAGAAGGTT 728
| || | || | | ||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 647 TATCTGA-TCACCAACCTGTCTGTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAAGTT 705
Query 729 GTTGAGATGGGTTTTGATCCCACCACTTCAAAGTTTGTTGTAGCT-TT-GCGCATGCTTT 786
|||||||||||||||||||| ||||| ||||||||||| |||| || | | || |||
Sbjct 706 GTTGAGATGGGTTTTGATCCAACCACCTCAAAGTTTGTCAAAGCTCTTAGGGT-TG-TTT 763
Query 787 ACCAAATGA-GCGAGAAAACGATTGAAGAAAAAGTTG-TAGTCTATACAAGTGTAGG-TT 843
|| | || |||| ||||| || |||| ||||||| | |||| || |||| |||| ||
Sbjct 764 AC-AGATTCCGCGACAAAACTATAGAAGCAAAAGTTAAT-GTCTGTAAAAGTTTAGGCTT 821
Query 844 TTACTCT-GGATGATGTATGGGAAAT-TTTCAAGAAGACTCCTTCCGTTT-TGAAAGTCT 900
|| || | ||| |||||||||| ||| ||| |||||| ||||||| ||| |||| |||
Sbjct 822 TT-CTGTTGGA-GATGTATGGGCAATGTTT-AAGAAGTGTCCTTCC-TTTCTGAATTTCT 877
Query 901 CCAAGAAGAAGATA 914
| |||| ||||||
Sbjct 878 CTGAGAACAAGATA 891
Score = 193 bits (104), Expect = 5e-48
Identities = 317/415 (76%), Gaps = 34/415 (8%)
Strand=Plus/Plus
Query 907 AGAAGATATTGAAGTCTGCTGAAACATTTCTAGCCCTAGGATATAGCAGAGCTGAGTTTT 966
|||||||| |||| || |||||||||||||| | |||||| |||||||| |||| ||
Sbjct 989 AGAAGATAATGAACTCCATTGAAACATTTCTAGGCTTAGGATTTAGCAGAGATGAGGTTG 1048
Query 967 TGATGATGGTCAAGCG-TTATCCTCCTTGCATTGAATATTCTCT--AGAGTCGGTTAA-A 1022
||||| | |||||| || ||||| ||| || || || ||| |||| | || || |
Sbjct 1049 CAATGATAGCCAAGCGCTT-TCCTCAATGCCTT--ATTTTATCTGCAGAGACAGTGAAGA 1105
Query 1023 AGGAAGAATGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAATGCCT-TGGTTTTGCA 1081
| |||| |||||||||||||||||||||||||||||||||||| || | |||||| ||
Sbjct 1106 A-AAAGACTGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAAGGC-TGTGGTTT--CA 1161
Query 1082 -CCC-T-CAGGTGTTTGGATACAGCATGGAGAAGAGGATTATACCAAGGTGTAACGTACT 1138
||| | | ||| ||||||||||| | |||||||||| ||| ||||||||||| ||| |
Sbjct 1162 ACCCCTGC-GGTACTTGGATACAGCTTAGAGAAGAGGACTATCCCAAGGTGTAATGTAAT 1220
Query 1139 CAAAGTTCTCTTGTCGAAAGGA-CTGCTCAGAAAGAAAAGCGAACTACCTGCCGTGTCCT 1197
|||| |||| |||| |||||| | ||| | ||| | ||||| |||| |||| |
Sbjct 1221 TAAAGCTCTCATGTCCAAAGGATC-GCTT-G---GAA--GTGAACTCCCTGGAATGTCGT 1273
Query 1198 CTGTTTTG-TCGTGTACCGATGAAGGATTTTTAAATAGGTATGTGATGAAGCAC-A--AC 1253
|||||||| | |||||| |||||| ||| ||| |||||||||| ||| || | ||
Sbjct 1274 CTGTTTTGGTA-TGTACCAATGAAGAATTCTTATGCAGGTATGTGAAGAACCATGATGAC 1332
Query 1254 --GA-GCTGGCGCCT-ACGTTGATGGCTATCTTCACCAAAGGTCGTGTTTCATAG 1304
|| | | | ||| | |||||||||||| |||||| || ||| |||||||||
Sbjct 1333 AAGAAGATAGTACCTGA-GTTGATGGCTATTTTCACCGGAGATCGCGTTTCATAG 1386
> AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902150-22903837 FORWARD
LENGTH=1688
Length=1688
Score = 514 bits (278), Expect = 9e-145
Identities = 710/908 (78%), Gaps = 72/908 (8%)
Strand=Plus/Plus
Query 55 TTGTCATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCGAATTGCATAAA-TGGCGC 113
||||||||||| ||||||| | ||||||||||||||||||| | || || ||| || |
Sbjct 85 TTGTCATGTATGCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTACAGAAATTGTC-T 143
Query 114 CATTTGAGA-TTTGCTCTGCAAAATGCATCTCCTTTGTCCAATTCCTTCTCTTCTGCT-G 171
|||| ||| ||| | | ||||| | |||| ||||||||||||||||||||| |||| |
Sbjct 144 AATTTCAGAGTTT-CAGTTCAAAACGGATCTGCTTTGTCCAATTCCTTCTCTTTTGCTAG 202
Query 172 CTGCTGCTGATGTGAGGTC-AAGAGATGGTCGAAAAGGAAAGAACTTTACGGTCTCTTAC 230
|| |||||||| || | | |||| | | ||||| || |||||||| |||||||||
Sbjct 203 -TGTTGCTGATGCGA-CCCTTATAGATAGCCTTAAAGGTAACAACTTTACAGTCTCTTAC 260
Query 231 CTCGTTGATTCATTGGGTTTCACTACAAAGCTCGCTGAATCGATCT-CAAGGAAAGTTCA 289
|| ||||||||||||||||| || ||||||||||| |||||||||| ||| ||||| | |
Sbjct 261 CTAGTTGATTCATTGGGTTTAACCACAAAGCTCGCAGAATCGATCTCCAA-GAAAG-TAA 318
Query 290 -TTTC-ACCGACAAGG-CAAATCCGGATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGCT 345
||| | || ||| ||||||||||||||||||||||||| || | |||| |||| |
Sbjct 319 GCTTCGA-GGA-GAGGAGAAATCCGGATTCTGTTCTGAGTCTTCTT-ACAAGTTATGGGT 375
Query 346 TCATAGATTCTCAGATCTCCTGCATCATTACCGAT-TATCCA-GAATTGCTTATACTAGA 403
||| | | |||||||| || | ||||||| | || || ||| | ||||||| | ||||
Sbjct 376 TCACAAAGTCTCAGATTTCAAGTATCATTA-CTATCTACCCACG-ATTGCTTGCATTAGA 433
Query 404 TGCTGAGAAAT-CACTTGGTCGCAAGCTTCAGAT-TCTGCAGTCTAGAGGAGCTTCAAGC 461
||||||||||| || ||| || |||||||||| | ||||||||| |||||||||||||||
Sbjct 434 TGCTGAGAAATCCA-TTGCTCCCAAGCTTCAG-TCTCTGCAGTCCAGAGGAGCTTCAAGC 491
Query 462 TCTGAACTCACTGAGATTGTTTCTACAGTTCCCAGAATCTT-----AG-GAAGG---AAA 512
||||| |||||| ||||||||||||| ||||| | |||||| || || || |||
Sbjct 492 TCTGAGCTCACTCAGATTGTTTCTACTGTTCCTAAAATCTTGGGGAAGAGAGGGCACAAA 551
Query 513 TCTATCACTGTATACTATGA-TGCTGTCAAAGAAATTATAGTAGCCGAT-A-AG----AG 565
||||| |||||||||||||| | | |||||||| ||||||| ||| ||| | || ||
Sbjct 552 TCTATAACTGTATACTATGATTTC-GTCAAAGACATTATAGAAGCTGATAAGAGTTCTAG 610
Query 566 TT-CG---AGTTATG--A-AC--TCCCACGGGGTTCTC-AGGGGAATAAAATCCGAAATG 615
|| || ||||||| | | | |||| ||| | | || |||||| ||| |||||
Sbjct 611 TTACGAAAAGTTATGTCATTCTTTTCCACAGGG-TAACAAGAAGAATAAGATCAGAAATA 669
Query 616 TATCTGTTTTGAGACAATTGGGCATGCCTCAGTGGTTGTTATTACCC-TTGCTTGTCTCC 674
| |||||||||||| ||||||| || ||||| | |||||||| ||| ||||| ||| |
Sbjct 670 TCTCTGTTTTGAGAGAATTGGGTGTGGCTCAGCGTTTGTTATT-CCCTTTGCTCATCT-C 727
Query 675 AAATCG-CAGCCTGTGTGTGGGAAAGAAA-ATTTTGAAGAATCCCTCAAGAAGGTTGTTG 732
| || | || ||||| ||||| ||||||| | ||||||||||| ||||||||||||||||
Sbjct 728 AGATGGCCAACCTGTCTGTGGTAAAGAAAGA-TTTGAAGAATCTCTCAAGAAGGTTGTTG 786
Query 733 AGATGGGTTTTGATCCC-ACCACTTCAAAGTTTGTTGTAGCTTTGCGCA-TGCTTTACCA 790
|||||||||||||||| | ||| ||||||| |||| |||| |||| | | ||||||
Sbjct 787 AGATGGGTTTTGATCCGGAG-ACTACAAAGTTCGTTGAAGCTCTGCG-AGTTATTTACCG 844
Query 791 AATGAGCGAGAAAACGATTGAAGAAAAAGTTG-TAGTCTATACAAGTGT-AGGTTTTACT 848
||||| || ||||| || ||||||||||| | ||||| | ||| || ||| ||| |
Sbjct 845 TATGAGTGACAAAACAATAGAAGAAAAAGTCAAT-GTCTACAAAAG-GTTAGGCTTTGGT 902
Query 849 CTGGATGATGTATGGGAAATTTTCAAGAAGACTCCTTCCGTTTTGAAAGT-CTCCA-AGA 906
||| ||||||||||| ||| ||||||||| ||||| ||||| | | ||| | |||
Sbjct 903 GTGGCTGATGTATGGGCAATCTTCAAGAAGTGGCCTTCTTTTTTGTCA-TACTC-AGAGA 960
Query 907 AGAAGATA 914
||||||||
Sbjct 961 AGAAGATA 968
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 477 bits (258), Expect = 1e-133
Identities = 637/806 (79%), Gaps = 81/806 (10%)
Strand=Plus/Plus
Query 130 TGCAAAATGCA-TCTC--CTTTGTCCAATTCCTTCTCTTC---TGCTGCTGCTGCTGATG 183
||||||||| | |||| ||| |||||||| |||||||| |||| ||||||||||||
Sbjct 258 TGCAAAATGTATTCTCTGTTTTTTCCAATTCATTCTCTTCTGTTGCTACTGCTGCTGATG 317
Query 184 TGAGGTCAAGAGATGGTCGAAAAGGAAAGAACTTTACGGTCTCTTACCTCGTTGATTCAT 243
|||| | |||||| |||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 318 TGAGCTTTAGAGATAGTCGAAAAGGTAACAACTTTACTGTCTCTTACCTCGTTGATTCAT 377
Query 244 TGGGTTTCA-CTACAAAGCTCGCTGAATCGATCTCAAGGAAAGTTCA-TTTC-ACCGA-C 299
||||||| | || |||||||||| ||||||||||| | |||||| || |||| | || |
Sbjct 378 TGGGTTT-AGCTTCAAAGCTCGCAGAATCGATCTCGATGAAAGT-CAGTTTCGA--GAAC 433
Query 300 AAGG-CAAATCCGGATTCTGTTCTGAGTCTT-TTGAGAAGTCATG-GCTTCATAGATTCT 356
|||| ||| ||| ||| | ||||||| |||| || |||||||||| | |||| |||||||
Sbjct 434 AAGGGCAA-TCCTGATACAGTTCTGAATCTTCTT-AGAAGTCATGAG-TTCACAGATTCT 490
Query 357 CAGATCTCCTGCATCATTACCGATTATCCAGA-ATTGCTTATA-CTAGATGCTGAGAAAT 414
||||||||| |||||||| | ||||||||| | ||||||| || | ||||||||| ||||
Sbjct 491 CAGATCTCCAGCATCATTTCGGATTATCCA-ACATTGCTTGTAGC-AGATGCTGA-AAAT 547
Query 415 -CACTTGGTCGCAAGCTTCAGATTC-TGCAGTCTAGAGGAGCTTCAAGCTCTGAACTCAC 472
||||||||| |||||||| | || |||||||||||||||||||||||||||| |||||
Sbjct 548 TCACTTGGTCCCAAGCTTCTG-TTGATGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCAC 606
Query 473 TGAGATTGTTTCTACAGTTCCCAGAATCTTAGGAAGGAAAT----C-----TATCA-CTG 522
|||||||||||||| |||||| | ||||||||||| |||| | |||| | |
Sbjct 607 TGAGATTGTTTCTAAAGTTCCTAAAATCTTAGGAATGAAAGGGGACAAAAGTATCGGCAG 666
Query 523 TATACTATGATG-CTGTCAAAGAAATTATAGTAGCCGATAAGAGTTCGA-GTTATGAA-- 578
|||||||||| | |||||||| ||||||| ||| |||||||| || | ||| |||
Sbjct 667 -ATACTATGATATC-GTCAAAGAGATTATAGAAGCGGATAAGAGCTCCAAGTTC-GAAAA 723
Query 579 -CTCC--CA--C---G---G-GGTTC-TCAG--GG-GAATAAAATCCGAAATGTATCTG- 621
|| || | | | || | | || || |||||||||| | ||||||| ||
Sbjct 724 GCTGTGTCATTCTTTGCCTGAGGGTAGTAAGCAGGAGAATAAAATCAGGAATGTAT-TGG 782
Query 622 TTTTGAGACAATTGGGCATGCCTCAGTGGTTGTTATTACCC-TTGCT-TGTCTCCAAATC 679
|||||||| | ||||| ||||||| |||||||||| | | ||||| | |||| || ||
Sbjct 783 TTTTGAGAGATTTGGGTGTGCCTCAAAGGTTGTTATT-CTCATTGCTCT-TCTCTAA-TC 839
Query 680 GC-A-GCCTGTGTGTGGGAAAGAAAATTTTGAAGAATCCCTCAAGAAGGTTGTTGAGATG 737
| | | ||| ||||| |||||||| ||||||||||| ||||| |||||||||| ||||
Sbjct 840 ACCATGTCTGC-TGTGGAAAAGAAAAGTTTGAAGAATCACTCAACAAGGTTGTTGGGATG 898
Query 738 GGTTTTGATCCCACCACTTCAAAGTTTGTTGTAGCTTTGCGCAT-GCTTTACCAAATGAG 796
|||||||||||||||||| |||||||||| | |||||| |||| | ||||| | ||||
Sbjct 899 GGTTTTGATCCCACCACTCCAAAGTTTGTGGAAGCTTTATGCATTG-TTTACGGATTGAG 957
Query 797 CGAGAAAACGATT-GAAGAAAAAGTTGTA-GTCTATACA-AG-TGTAGGTTTTACTCTGG 852
||| |||| || | |||||||| || | ||||| | | || | | || || ||| |
Sbjct 958 CGACAAAA-GACTAGAAGAAAAC-TTCAATGTCTACA-AGAGATTT-GGCTTAACTGTAA 1013
Query 853 ATGATGTATGGGAAATTTTCAAGAAG 878
| |||||||||||| |||||||||||
Sbjct 1014 ACGATGTATGGGAACTTTTCAAGAAG 1039
> AT1G62055.1 | Symbols: | pseudogene, hypothetical protein |
chr1:22940331-22940864 REVERSE LENGTH=534
Length=534
Score = 267 bits (144), Expect = 3e-70
Identities = 261/316 (83%), Gaps = 14/316 (4%)
Strand=Plus/Plus
Query 194 AGATGGTCGAAAAGGAAAGAACTTT-ACGGTCTCTTACCTCGTTGATTCATTGGGTTTCA 252
||||||||||||||| || | ||| || ||||||||||| ||||||||||||| || |
Sbjct 183 AGATGGTCGAAAAGGTCAG-ATTTTCACTATCTCTTACCTCATTGATTCATTGGGATTAA 241
Query 253 -CTACAAAGCTCGCTGAATCGATCTCAAGGAAAGTTCATTTCACCGA-CA-AGG-CAAAT 308
| | ||| ||||||||||| ||||| ||||||| | | | ||| | ||| ||||
Sbjct 242 CCGA-AAAACTCGCTGAATCCATCTCGAGGAAAG-T-A-AGCGTCGATGAGAGGAGAAAT 297
Query 309 CCGGATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGCTTCATAGATTCTCAGATCTCCTG 367
|| ||||||||||||| |||| || |||||| |||| |||| ||||||||||||||| |
Sbjct 298 CCTGATTCTGTTCTGAATCTTCTT-AGAAGTTATGGTTTCACAGATTCTCAGATCTCAAG 356
Query 368 CATCATTACCGATTATCC-AGAATTGCTTATACTAGATGCTGAGAAATCACTTGGTCGCA 426
|||||||| ||||||| | ||||||||| |||||||| |||||||||||| || ||
Sbjct 357 TATCATTACAAATTATCCTCG-GTTGCTTATAGTAGATGCTAAGAAATCACTTGCTCCCA 415
Query 427 AGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGCTCTGAACTCACTGAGATTGTTTCTA 486
|||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 416 AGCTTCAGGTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGACTGTTTCTA 475
Query 487 CAGTTCCCAGAATCTT 502
| ||||| | ||||||
Sbjct 476 CCGTTCCTAAAATCTT 491
> AT1G62490.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:23130405-23131533 REVERSE
LENGTH=1005
Length=1005
Score = 244 bits (132), Expect = 1e-63
Identities = 271/333 (81%), Gaps = 30/333 (9%)
Strand=Plus/Plus
Query 56 TGTCATGTATTCTCTGATTCTCCATGGAAGAAGGT-TGGTCGAATTGCATAAATGGCGCC 114
||| |||| ||||||||| |||||||||||||| | | |||| || |||||||||||
Sbjct 117 TGTGATGTGTTCTCTGATACTCCATGGAAGAAGATCT-ATCGAGTTACATAAATGGCGTA 175
Query 115 A-TTT-GAGATT---T---GC-TCTGCAAAATGCA-TCTC--CTTTGTCCAATTCCTTCT 162
| ||| | | || | || | ||||||||| | |||| |||| |||||||||||||
Sbjct 176 ACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCT 235
Query 163 ---C--TT-CT-GCTGCTGCTGCTGATGTGAGGTC-AAGAGATGGTCGAAAAGGAAAGAA 214
| || || | ||||||||||||||||| | | | |||| ||| |||||| |||||
Sbjct 236 CCACTGTTGCTAG-TGCTGCTGCTGATGTGA-GCCTTATAGATAGTCAAAAAGGTAAGAA 293
Query 215 CTTTACGGTCTCTTACCTCGTTGATTCATTGGGTTTCA-CTACAAAGCTCGCTGAATCGA 273
|||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 294 CTTTACAGTCTCTTACCTCGTTGATTCATTGGGTTT-ACCTAAAAAGCTCGCTGAATCGA 352
Query 274 TCTCAAGGAAAGTTCA-TTTC-ACCGACAAGGCAAATCCGGATTCTGTTCTGAGTCTTTT 331
| |||| |||| || | ||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 353 TTTCAAAGAAA-TTTAGATTCGA-GGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTT 410
Query 332 GAGAAGTCATGGCTTCATAGATTCTCAGATCTC 364
|||||||||||| |||| || ||||||||||||
Sbjct 411 GAGAAGTCATGGGTTCACAGTTTCTCAGATCTC 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5