BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475139
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61930.1 | Symbols: | Protein of unknown function, DUF584 |... 1020 0.0
> AT1G61930.1 | Symbols: | Protein of unknown function, DUF584
| chr1:22893101-22893976 FORWARD LENGTH=876
Length=876
Score = 1020 bits (552), Expect = 0.0
Identities = 740/823 (90%), Gaps = 43/823 (5%)
Strand=Plus/Plus
Query 22 ATTAATCAGTGATTAGTTTAGAGATTAAAGAAGAGGGTGAA---GTTGTTGCATGGCAAA 78
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 66 ATTAATCAGTGATTAATTTAGAGATTAAAGAAGAGGGTGAAGTTGTTGTTGCATGGCAAA 125
Query 79 AGGTCGAAA-CCTGACGACGATGAACCGGAGCGATCGATACCTTGGAAGTTACAGTTACG 137
||||||||| || |||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 126 AGGTCGAAAGCC-GACGACAATGAACCGGAGCGATCGATACCTTGGAAGCTACACTTACG 184
Query 138 GTGACAGTCATGGTAACTCCGTCACCGACGAATTAGAGCTCGCTGAGGAAGACATCTGGT 197
|||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 185 GTGACAGTCACGGAAACTCCGTTACCGACGAATTAGAGCTCGGTGAGGAAGACATCTGGT 244
Query 198 CACCGGCCGTCATT--C-ACGACACTTCCGAGACA-GACGAATCATACGGTGCGTGGAAC 253
|||||||||||||| | ||||||| |||||| | || ||||| ||||| ||||||||
Sbjct 245 CACCGGCCGTCATTCACGACGACACCACCGAGA-ATGAGGAATCCTACGGCACGTGGAAC 303
Query 254 TTACGCGCTACCTTGGGGAAAAACGGACGCGTGGGAGGATTGTCGCTGGCTTTCGAGGGC 313
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 TTACGCGCTACCTTGGGAAAAAACGGGCGCGTGGGAGGATTGTCGCTGGCTTTCGAGGGC 363
Query 314 TCTTTGGCCGCGCCGCCGTCGTCGTCGCCGATGATAGTGCAGAAGATCCACGGCGGAGGA 373
||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 364 TCTTTGGTTGCTCCGCCGTCGTCTTCGCCGATGATAGTGCAGAAGATTCACGGCGGAGGA 423
Query 374 GGTGAGGGAGAAGAA-ATCCGGCGAAAATTGGCGTCGTCGGCGCCGGTAAACGTACCGGA 432
||||||||||| ||| | |||| ||||||||||||| |||||||||||||||||||||||
Sbjct 424 GGTGAGGGAGAGGAAGA-CCGGAGAAAATTGGCGTCTTCGGCGCCGGTAAACGTACCGGA 482
Query 433 CTGGAGTAAGATATACCGAGTGGACTCGGTTGAGTCAATACACGAGTTAGACGATGACGA 492
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 483 CTGGAGTAAGATATACCGAGTTGACTCGGTTGAGTCAATACACGAGTTAGACGACGAGGA 542
Query 493 TGAAGAGGATGAGGAATCCGGGATGATGCCGCCGCACGAGTACCTTGCTAAGAGTCAAGC 552
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 TGACGAGGATGAGGAATCCGGGATGATGCCGCCGCATGAGTACCTTGCTAAGAGTCAAGC 602
Query 553 ACGGCGGAGCAGGAAGATCGGAGGTGGAGGCGGCGGTGGCGCGTCGGTGTTTGAAGGCGT 612
||||||||| || |||||||||||||| || || || ||||||||||| |||||
Sbjct 603 ACGGCGGAGTAGAAAGATCGGAGGTGGTGG------TG-CG--TCGGTGTTTGACGGCGT 653
Query 613 CGGAAGGACTCTCAAAGGCAGAGAGCTAAGGCGCGTCCGCGATGCGATTTGGAGCCAAAC 672
|||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct 654 CGGAAGGACTCTCAAAGGCAGAGAACTAAGGCGCGTTCGTGACGCGATTTGGAGCCAAAC 713
Query 673 AGGCTTCTACGGCTAAGTATAATTAATAAA--TAAAA-------CATTTTAGATTTCAAT 723
||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 714 AGGGTTCTACGGCTAAGTATAATTAACAAAACTAAAAAAAAAAACATTTTAGATTTCAAT 773
Query 724 TAAAATTACTTGTTTTTGCCAGTATAGAAGTAATTTT-GTGATTATGCAA-ttttt--tt 779
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 774 TAAAATTACTTGTTTTTGCCAGTATAGAAGTAATTTTTGTGATTATGCAAATTTTTAATT 833
Query 780 ---A-TT--AT---GAACGAGGCCAAAATTTCAAGTTCCTCGT 813
| || || ||||||| |||||||||||||||||||||
Sbjct 834 TTGAGTTTTATTATGAACGAGACCAAAATTTCAAGTTCCTCGT 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5