BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475141
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2885 0.0
> AT1G61900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: anchored to plasma membrane, plasma membrane,
anchored to membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G30700.1); Has
65 Blast hits to 65 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22882215-22885053
REVERSE LENGTH=1926
Length=1926
Score = 2885 bits (1562), Expect = 0.0
Identities = 1818/1937 (94%), Gaps = 35/1937 (2%)
Strand=Plus/Plus
Query 1 CACAACAGACTGTGTTCATTACTCGTGGGGtc--tctctctcctctctatctctctcttt 58
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CACAACAGACTGTGTTCATTACTCGTGGGGTCGGTCTCTCTCCTCTCTATCTCTCTCTTT 60
Query 59 ctctGTGAAGACGAAGACAGCTGTTTCTGAGTTTCCCTTTTGTTTTTGTGTCTATCTTCT 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTCTGTGAAGACGAAGACAGCTGTTTCTGAGTTTCCCTTTTGTTTTTGTGTCTA---TCT 117
Query 119 TCTCAACCAAGtttttttGTGTCCAAAATCTCGCAAAGAAACGCCTTTCTCTTCTTCATC 178
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 118 TCTCAACCAAGTTTTTTGGTGTCCAAAAT-TCGCAAAGAAACGCCTTTCTCTTCTTC-TC 175
Query 179 CTTAGATTTCTCGGACTTTCTTTTACTAGTGGGAAAAAG--ACAGAATCTCaaaaaaaGT 236
||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 176 CTTAGATTTCTCGGACTTTCTTTCAATAGTGGGAAAAAGACACAGAATCTC-AAAAAAGT 234
Query 237 CCTAACTTGTCCAAAGTCCAAAGCTTTTGAAAGAGACCATAAAAGCAGTGCTTAATCTTC 296
||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 235 CCTCTCTTGTCCAAAGTCCAAAGCTTTTGAAAGAGACCATAAAAACAGAGCTTAATC-TC 293
Query 297 -ctctgtctctgtctgtgtctctctctct-gA-G-AAGAAAATGACGAGAGGAGCTGAAT 352
||||||||||||| | ||||||| | | || | || ||||||||| |||||||||
Sbjct 294 TCTCTGTCTCTGTC--TCTCTCTCT-TTTGGAGGCTTGAGGATGACGAGAAGAGCTGAAT 350
Query 353 TTGAGATGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATGTCTCTATGTGGTTTA- 411
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 351 TTGAGATGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATATCTCTATGTTCATCAC 410
Query 412 GGTTCATCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCATTTCTT 471
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 AG-AAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCGTTTCTT 469
Query 472 CCCTTT-ATTGCCCCTTCTCCAATGGTTCCATACATAAACAGTACCATGCCGAAACTATC 530
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 470 -CCTTTCATTGCACCTTCTCCAATGGTTCCATACATAAATAGTACCATGCCTAAACTATC 528
Query 531 GGGGCTTTGTTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACAACTTCACACAA 590
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 529 AGGGCTTTGCTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACTACTTCACACAA 588
Query 591 TTGTTGGACTGTTTTTGCTCCATTGTTGGCAAATGTGATGTGTTGTCCTCAGTTAGATGC 650
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 CTGTTGGACTGTTTTTGCTCCATTGTTGGCAAATGTGATGTGTTGTCCTCAGCTAGATGC 648
Query 651 TACACTCACGATAATCCTTGGTAAAGCGAGCAAAGAAACCGGTATGCTTGCTCTAAACAG 710
||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 649 TACACTCACAATAATCCTTGGTAAAGCGAGTAAAGAAACCGGTTTGCTTGCTTTAAACAG 708
Query 711 AACCCAGTCTAAGCACTGTCTCTCGGATTTAGAGCAAATCTTGGTAGGCAAAGGCGCTTC 770
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 709 AACCCAGTCTAAGCACTGTCTCTCGGATTTAGAGCAAATCTTGGTAGGAAAAGGCGCTTC 768
Query 771 AGGTCAGCTTAATAAGATCTGTTCTATTCACTCGTCGAATCTCACTTCTTCGTCGTGCCC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGGTCAGCTTAATAAGATCTGTTCTATTCACTCGTCGAATCTCACTTCTTCGTCGTGCCC 828
Query 831 TGTTATCAATGTCGATGAATTTGAAAGCACGGTGGATACAGCGAAACTTCTTTTGGCCTG 890
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TGTTATCAATGTCGATGAGTTTGAAAGCACGGTGGATACAGCGAAACTTCTTTTGGCCTG 888
Query 891 TGAAAAAATCGATCCTGTGAAGGAGTGTTGCGAAGAGGCTTGCCAAAATGCGATACTCGA 950
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 889 TGAAAAAATTGATCCTGTGAAGGAATGTTGCGAAGAGGCTTGCCAAAATGCGATACTCGA 948
Query 951 TGCTGCTAGGAATATATCTCTTAAAGCATCAGAAACTTTAACTGATAATTCGGATAGGAT 1010
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGCTGCTACGAATATATCTCTTAAAGCATCAGAAACTTTAACTGATAATTCGGATAGGAT 1008
Query 1011 CAATGATTGCAAGAACGTAGTAAACCGCTGGCTTGCTACTAAACTTGACCCTTCTCGGGT 1070
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1009 CAATGACTGCAAGAACGTAGTAAACCGCTGGCTCGCTACTAAACTTGACCCTTCTCGGGT 1068
Query 1071 TAAGGAAACTCTCAGAGGCTTAGCAAACTGCAAAATCAATAGAGTTTGTCCTCTTGTCTT 1130
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAAGGAAACTCTCAGAGGATTAGCAAACTGCAAAATCAATAGAGTTTGTCCTCTTGTCTT 1128
Query 1131 TCCGCACATGAGGCATATTGGTGGTAACTGCAGCAACGAGTTGAGTAACCACACGGGTTG 1190
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1129 TCCGCACATGAAGCATATTGGTGGTAACTGCAGCAACGAGTTGAGTAACCAAACGGGTTG 1188
Query 1191 TTGCCGTGCAATGGAAAGTTATGTGTCTCACTTGCAAAAGCAAACACTTATAACCAATTT 1250
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TTGCCGTGCAATGGAGAGTTATGTGTCTCACTTGCAAAAGCAAACACTTATAACCAATTT 1248
Query 1251 GCAAGCTTTAGATTGCGCAACCAGCCTTGGCACAAAGCTACAGAAACTTAACATCACTAA 1310
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 1249 GCAAGCTTTAGATTGCGCAACCAGCCTTGGGACAAAGTTACAGAAACTGAACATCACTAA 1308
Query 1311 GAACATCTTCAGCGTTTGTCATATAAGTCTCAAGGACTTCTCTCTTCAAGTTGGAAACCA 1370
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GAACATATTCAGTGTTTGTCATATAAGTCTCAAGGACTTCTCTCTTCAAGTTGGAAACCA 1368
Query 1371 AGAATCTGGCTGTCTATTACCAAGCTTACCATCCGATGCGATATTTGATAAAGACACGGG 1430
||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 1369 AGAATCTGGTTGTCTATTACCGAGCCTACCATCGGATGCGATATTTGATAAAGACACGGG 1428
Query 1431 AATAAGCTTTACTTGTGACCTCAACGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCA 1490
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1429 GATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCT 1488
Query 1491 ATCCTCAGCATCTACCTGTAAAAAACCTGTTAGAATTCCTGCGCTCCCGGCTGCTGCCTC 1550
||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1489 ATCCTCAGCCTCTACCTGTAAAAAACCTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTC 1548
Query 1551 CTCGCAACC-CGGTCTCTACGATGAAGGAGTGACACGTTTGGTGGTCTTTGCCTTGTCTA 1609
||||||||| || |||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1549 CTCGCAACCTCG-TCTCCACGATGAAGGAGTGACACGTTTGGTGATCTTTGTCTTGTCTA 1607
Query 1610 TGGTTCTTGTGATGCTTCTATCATAGTA---GAACTAAACCGGATCCAGTCTTCTCTC-T 1665
|| |||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
Sbjct 1608 TGCTTCTTGTGATGCTTCTGTCATAGTACCAGAACTAAGCCGGATCCAGTCTTCTCTTAT 1667
Query 1666 ACCGGTTTACTAGTCAATAGGTGT-TT-GCGTAGATCAAACCGGTATAGTC-GCTGCAGA 1722
|||||||||||||||||||||||| || | ||||||||||| |||| |||| ||| || |
Sbjct 1668 ACCGGTTTACTAGTCAATAGGTGTGTTTGTGTAGATCAAACTGGTACAGTCAGCTACAAA 1727
Query 1723 AGTCGTATGTTGACATGACGGGTTCAAGTGTTTGAGTTGTTGAGGTATAAGTTTTCGGAA 1782
||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 1728 AGTCGGATGTTGACATGACCGGTTCAAGTGTATGAGTTGTTGAGGTATAAGTTT-CGGAA 1786
Query 1783 AGTCTTTT-ATCtttttttGATTCATGATTCTTGAAAACCTTTTTAATGTAAAGAAAAGG 1841
|||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1787 AGTCTTTTTATCTTTATT-GATTTATGATTCTTGAAAACCTTTTTAATGTAAAGAAAAGG 1845
Query 1842 TATTGTAGGGTTTATAT-GTAAGCTTATTATATATTTATTTATAGACTGTCGATTTCATA 1900
| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1846 TCTTGTAGGGTTTATAACGTAAGGTTATAATATATTTATTTATAGACTGTCGATTTCATA 1905
Query 1901 ATTCAAAAGTGTTACTT 1917
|||||||||||||||||
Sbjct 1906 ATTCAAAAGTGTTACTT 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94929230595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5