BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475142
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61890.1 | Symbols: | MATE efflux family protein | chr1:228... 2531 0.0
AT1G11670.1 | Symbols: | MATE efflux family protein | chr1:392... 1133 0.0
> AT1G61890.1 | Symbols: | MATE efflux family protein | chr1:22867770-22871280
REVERSE LENGTH=1956
Length=1956
Score = 2531 bits (1370), Expect = 0.0
Identities = 1610/1722 (93%), Gaps = 32/1722 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGAATTCAGAATCATTAGAAAATCTCCACCGTCCATTGATTGAATCGTCGAA 60
||||||||||||||||||||| |||||||||| ||||||||||| || ||||| |||||
Sbjct 111 AAAAAAAATGAATTCAGAATCGCTAGAAAATCTTCACCGTCCATTAATCGAATCATCGAA 170
Query 61 ATCGTTCGTCGATTATCGTCTCGAGACTGTGTTAACAGATCGAGAATTGCCGTATTTTCG 120
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 171 GTCGTTCGTCGATTATCGTCTCGAGACTGTGTTAACAGATCGAGAGTTACCGTATTTTCG 230
Query 121 CCGGATTTATCTAGCGATGGTGATTGAGATGAAGTTTCTCTTTCATTTGGCGGCTCCGGC 180
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 231 CCGGATTTATCTAGCGATGATGATTGAGATGAAGTTTCTCTTTCATCTGGCGGCTCCGGC 290
Query 181 GATCTTTGTGTACGTCATCAACAACGGTATGTCGATTCTCACACGTATCTTCGCCGGTCA 240
||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||
Sbjct 291 GATCTTTGTTTACGTCATCAACAACGGCATGTCAATTCTTACACGTATCTTCGCTGGACA 350
Query 241 CGTCGGAAGCTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTCAATATGTTCAC 300
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 351 CGTAGGAAGCTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTCAACATGTTCAC 410
Query 301 CTATGGACTTCTGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTGGTCAAGCACATGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTATGGACTTCTGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTGGTCAAGCACATGG 470
Query 361 AGCTCATCGATACGAAATGCTCGGTGTTTACCTCCAAAGATCAACA-TTGGTTCTAATCC 419
||||||| ||||||||||||| || ||||||||||||||||||||| || ||||||||||
Sbjct 471 AGCTCATAGATACGAAATGCTTGGAGTTTACCTCCAAAGATCAACAGTT-GTTCTAATCC 529
Query 420 TAACATGTATACCAATGTCACTTCTCTTCCTCTTCTCAAATCCAATCCTTACTTCACTTG 479
|||||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||
Sbjct 530 TAACATGTCTACCAATGTCATTTCTCTTCCTCTTCTCAAATCCGATCCTCACAGCACTTG 589
Query 480 GAGAGCCAAAACAAGTGGCAACATTAGCTTCCGTATTCGTCTACGGTATGATCCCAGTGA 539
|||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 590 GAGAGCCAGAGCAAGTGGCAACATTGGCTTCAGTATTCGTCTACGGTATGATCCCGGTGA 649
Query 540 TCTTCGCTTACGCTA-TCAATTTCCCTATCCAAAAGTTTCTCCAATCACAAAGCATTGTC 598
||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 650 TCTTCGCTTACGC-AGTCAATTTCCCTATCCAGAAGTTTCTCCAATCACAAAGCATCGTC 708
Query 599 ACTCCAAGCGCTTACATATCCGCCGCAACGCTCGTGATCCATCTCGTTCTTTCGTGGATC 658
|||||||| || |||||||| || |||||||| |||||||||||| | ||||||||||||
Sbjct 709 ACTCCAAGTGCCTACATATCAGCTGCAACGCTTGTGATCCATCTCATACTTTCGTGGATC 768
Query 659 GCTGTGTATCGTCTTGGTTATGGTCTTTTGGCTTTATCTTTGATACATAGCTTCTCGTGG 718
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 769 GCTGTGTATCGTCTTGGTTACGGTCTTTTGGCTTTGTCTTTGATACATAGCTTCTCGTGG 828
Query 719 TGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAATGAGTCCGAGATGTCGTCGGACT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAATGAGTCCGAGATGTCGTCGGACT 888
Query 779 TGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTGGGATTTTTTCCGATTATCTGCT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 889 TGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTGGGATTTTTTCCGATTATCAGCT 948
Query 839 GCTTCTGCCGTCATGCTTTGCCTTGAATCTTGGTACTCTCAGATTCTTGTTTTGCTCGCT 898
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 949 GCTTCTGCCGTCATGCTTTGTCTTGAATCTTGGTACTCTCAGATTCTTGTTTTACTCGCC 1008
Query 899 GGACTTCTCAAGAACCCTGAACTTGCTTTGGATTCTCTCGCTATCTGCATGTCAATTTCT 958
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1009 GGACTTCTCAAGAACCCTGAGCTTGCTTTGGATTCTCTTGCTATCTGCATGTCAATTTCT 1068
Query 959 GCAATCTCATTCATGGTCTCCGTTGGATTCAATGCAGCTGCAAGTGTGAGAGTAAGCAAT 1018
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 GCAATCTCATTCATGGTCTCCGTTGGATTCAACGCAGCTGCAAGTGTGAGAGTAAGCAAC 1128
Query 1019 GAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTCTCCACGGTAGTGACGACTGGAGTA 1078
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 1129 GAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTCTCCACAGTCGTGACAACGGGAGTA 1188
Query 1079 TCATTCTTACTATCGATTTTTGAAGCTATCGTGGTCTTATCATGGCGTAATGTCATCAGC 1138
||||||||||||||| |||| ||||| |||||||||||||| |||||| | |||||||||
Sbjct 1189 TCATTCTTACTATCGGTTTTCGAAGCCATCGTGGTCTTATCGTGGCGTCACGTCATCAGC 1248
Query 1139 TATGCGTTTACAGATAGTCCTGCAGTGGCTGAGGCCGTTGCGGATTTATCTCCCTTTTTA 1198
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TATGCGTTTACTGATAGTCCAGCAGTGGCTGAGGCCGTTGCGGATTTATCTCCCTTTTTA 1308
Query 1199 GCCATCACAATTGTCCTCAATGGAATTCAGCCAGTTTTGTCCGGTGTGGCTGTTGGATGT 1258
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1309 GCCATCACAATTGTCCTCAATGGAATTCAGCCTGTTTTGTCCGGTGTGGCTGTTGGATGT 1368
Query 1259 GGATGGCAAGCATTTGTTGCGTACGTAAACATTGGATGTTACTACGTTGTGGGGATACCA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1369 GGATGGCAAGCATTTGTTGCGTACGTAAACATTGGATGTTACTACGTTGTGGGGATTCCA 1428
Query 1319 GTGGGATTCGTTCTTGGCTTCACTTATGATATGGGAGCTAAGGGAATATGGACAGGGATG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1429 GTGGGATTCGTTCTTGGCTTCACTTATGATATGGGAGCTAAGGGAATATGGACTGGGATG 1488
Query 1379 ATTGGTGGTACATTAATACAGACAATAATCTTAGTGATTGTCACTTTACGAACTGATTGG 1438
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1489 ATTGGTGGTACTTTAATGCAAACAATAATCTTAGTGATTGTCACTTTACGAACTGATTGG 1548
Query 1439 GACAAAGAGGTTGAAAAAGCTTCGAGCAGATTGGACCAGTGGGAAGAGAGCCGTGAGCCG 1498
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GACAAAGAGGTTGAGAAAGCTTCGAGCAGATTGGACCAGTGGGAAGAGAGCCGTGAGCCG 1608
Query 1499 CTTTTGAAGC----AAT--A--AAT--AA--A-----TTA-----A---TTTTTGGGAGT 1533
|||||||||| ||| | ||| || | ||| | |||||||||||
Sbjct 1609 CTTTTGAAGCAATAAATAAATTAATGAAATGATTTGTTTATTTTTATTTTTTTTGGGAGT 1668
Query 1534 TTTGAGGTCAGATTGAAATCAAAATTTTTGTTTCCCCCAAA-ATTGGCGATGGAGGATCA 1592
||||||||||||||||||||||||||||||||||||| ||| || |||||| || |||||
Sbjct 1669 TTTGAGGTCAGATTGAAATCAAAATTTTTGTTTCCCCGAAATAT-GGCGATAGATGATCA 1727
Query 1593 CTTGTAAAATGCAGATTCAATTGTTAAACTCTCGTTTTTCAATCGAAAAATGTATGTCGC 1652
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1728 CTTGTAAGATGCATATTCAATTGTTAAACTCTCGTTTTTCAATCGAAAAATGTATATCGC 1787
Query 1653 TTTGTTAATTAATGACTTGGTAATTTGA-tttttttCTTGGT 1693
||||||| |||||||||||| ||||||| ||||||| |||||
Sbjct 1788 TTTGTTATTTAATGACTTGGAAATTTGAGTTTTTTTTTTGGT 1829
> AT1G11670.1 | Symbols: | MATE efflux family protein | chr1:3928162-3931576
REVERSE LENGTH=1964
Length=1964
Score = 1133 bits (613), Expect = 0.0
Identities = 1173/1439 (82%), Gaps = 56/1439 (4%)
Strand=Plus/Plus
Query 113 TATTTTCGCCGGATTTATCTAGCGAT-GGTGATTGAGATGAAGTTTCTCTTT-CATTTGG 170
|||||||| ||||| || || ||| | | |||| |||||||||| || ||| || ||||
Sbjct 209 TATTTTCGGCGGATCTACCTTGCG-TCGTTGATCGAGATGAAGTACCT-TTTCCACTTGG 266
Query 171 CGGCTCCGGCGATCTTTGTGTACGTCATCAACAACGGTATGTCGATTCTCACACGTATCT 230
||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||||
Sbjct 267 CGGCTCCGGCGATCTTTGTCTACGTCATCAACAATGGCATGTCTATGCTCACTCGTATCT 326
Query 231 TCGCCGGTCACGTCGGAAGCT-TCG-AACTCGCCGCCGCTTCACTTGGAAACAGTGGTTT 288
|||| |||| | ||||| | | | ||||||| |||||||| || |||||||| |||||
Sbjct 327 TCGCTGGTCGTTTGGGAAG-TAT-GCAACTCGCTGCCGCTTCTCTAGGAAACAGCGGTTT 384
Query 289 CAATATGTTCAC-CTATGGACTTC-TGCTTGGAATGGGAAGTGCAGTGGAAACATTATGT 346
|||||||||||| || ||| | || ||||||||||||||||||||||||| |||||||||
Sbjct 385 CAATATGTTCACTCT-TGGTC-TCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGT 442
Query 347 GGTCAAGCACATGGAGCTCATCGATACGAAATGCTCGGTGTTTACCTCCAAAGATCAAC- 405
|| ||||| |||||||||||| ||||||| ||||| || || ||| | |||||||| ||
Sbjct 443 GGGCAAGCGCATGGAGCTCATAGATACGACATGCTTGGAGTCTACTTACAAAGATCCACG 502
Query 406 ATTGGTTCTAATCCTAACATGTA-TACCAATGTCAC-TT-CTCTTCCTCTTCTCAAATCC 462
||| ||||| || |||| | | | |||||| || || |||||| |||||||||| ||
Sbjct 503 ATT-GTTCTTGTCATAAC-CGGACTTCCAATG--ACTTTACTCTTCATCTTCTCAAAACC 558
Query 463 AATCCTTACTTCACTT-GGAGAGCCAAAACAAGTGGCAACATTAGCTTCCGTATTCGTCT 521
|||| | ||| ||| || |||||| | || ||| || | || || ||||||||||
Sbjct 559 TCTCCTCATTTC-CTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCATCAGTATTCGTCT 617
Query 522 ACGGTATGATCCCAGTGATCTTCGCTTACGCTATCAATTTCCCTATCCAAAAGTTTCTCC 581
|||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 618 ACGGTATGATCCCAATGATCTTCGCTTACGCCGTCAACTTCCCCATCCAAAAGTTTCTCC 677
Query 582 AATCACAAAGCATTGTCACTCCAAGCGCTTACATATCCGCCGCAACGCTCGTGATCCATC 641
| || |||||||| ||||| || || ||||| || || |||||||| || || ||||| |
Sbjct 678 AGTCGCAAAGCATCGTCACGCCGAGTGCTTATATCTCAGCCGCAACACTAGTCATCCA-C 736
Query 642 -TCGTTCTTTCGTGGATCGCTGTGTAT-CGTCTTGGTTATGGTCTT--TTGGCTTTAT-C 696
| | || || ||| || |||| | | || |||||| || ||| |||| | | | |
Sbjct 737 TTAATCCTCTCTTGGCTCTCTGTCTTTAAGT-TTGGTT-GGGGCTTACTTGG-TCTCTCC 793
Query 697 TTTGATACATAGCT-TCTCGTGGTGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAA 755
||| | ||||| | ||||||||||||||||||| | ||||||||| |||| ||||| |
Sbjct 794 GTTG-TTCATAG-TCTCTCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGA 851
Query 756 TGAGTCCGAGATGTCGTCGGACTTGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTT 815
| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 852 TAAGTCCAAGATGTCGCCGGACTTGGGATGGTTTTAGTTGGAAAGCTTTTGATGGTCTTT 911
Query 816 GGGATTTTTTCCGA-TTATCTGCTGCTTCTGCCGTCATGCTTTGCCTTGAATCTTGGTAC 874
|||| ||||||| | ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 912 GGGACTTTTTCC-AGTTATCCGCAGCTTCCGCCGTCATGCTCTGCCTTGAATCTTGGTAC 970
Query 875 TCTCAGATTCTTGTTTTGCTCGCTGGACTTCTCAA-GAACCCTGAACTTGCTTTGGATTC 933
||||||||||||||| | ||||| |||||||| || || |||||||||||||||||||||
Sbjct 971 TCTCAGATTCTTGTTCTCCTCGCCGGACTTCTTAAAGA-CCCTGAACTTGCTTTGGATTC 1029
Query 934 TCTCGCTATCTGCATGTCAATTTCTGCAATCTCATTCATGGTCTCCGTTGGATTCAATGC 993
||| || |||||||||||||| |||||||| || |||||||| || ||||||||||| ||
Sbjct 1030 TCTAGCAATCTGCATGTCAATCTCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGC 1089
Query 994 AGCTGCAAGTGTGAGAGTAAGCAATGAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTT 1053
|||||| ||||||||||| || || || |||| || ||||| || ||| |||| || ||
Sbjct 1090 AGCTGCCAGTGTGAGAGTTAGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATT 1149
Query 1054 CTCCACGGTAGTGACGACTGGAGTATCATTCTTACTATCGATT-TTTGAAGCTATCGTGG 1112
|| || | || || || ||||| ||||| ||||| || ||| |||||||| ||||||
Sbjct 1150 TTCAACCGCGGTAACTACAGGAGTGTCATTTTTACTGTC-ATTGTTTGAAGCCATCGTGA 1208
Query 1113 TCTTATCATGGCGTA-ATGTCATCAGCTATGCGTTTACAGATAGTCCTGCAGTGGCTGAG 1171
|| | || ||||| | |||||||||| || ||||| |||||||| || || || ||
Sbjct 1209 TCCTCTCGTGGCG-ACATGTCATCAGTTACATTTTTACGGATAGTCCAGCGGTTGCGGAA 1267
Query 1172 GCCGTTGCGGATTTATCTCCCTTT-TTAGCCATCACAATTGTCCTCAATGGAATTCAGCC 1230
||||| || || | ||||| ||| |||||||| || || || ||||||||| |||| ||
Sbjct 1268 GCCGTCGCCGAGCTCTCTCC-TTTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACC 1326
Query 1231 AGTTTTGTCCGGTGTGGCTGTTGGATGTGGATGGCAAGCATTTGTTGCGTACGTAAACAT 1290
||||| || |||||||| |||||||||||||||||||||| ||| || ||||| |||||
Sbjct 1327 TGTTTTATCTGGTGTGGCCGTTGGATGTGGATGGCAAGCATATGTAGCTTACGTTAACAT 1386
Query 1291 TGGATGTTACTACGTTGTGGGGATACC-AGTGGG-ATTCGTTCTTGGCTTCACTTATGAT 1348
||||||||| ||| |||||||||| || | ||| || |||||||| ||||| ||||||
Sbjct 1387 TGGATGTTATTACATTGTGGGGATTCCGATTGGTTAT--GTTCTTGGTTTCACCTATGAT 1444
Query 1349 ATGGGAGCTAAGGGAATATGGACAGGGATGATTGGTGGTACATTAATACAGACAATAATC 1408
|||||||||| ||||||||||||||||||||||||||| ||| | || || || || |||
Sbjct 1445 ATGGGAGCTAGGGGAATATGGACAGGGATGATTGGTGGCACACTCATGCAAACTATTATC 1504
Query 1409 TTAGTGATTGTCACTTTACGAACTGATTGGGACAAAGAGGTTGAAAAAGCTTCGAG-CAG 1467
|| || |||||||| || ||||| |||||||| |||||||| || || |||||||| | |
Sbjct 1505 TTGGTCATTGTCACATTCCGAACCGATTGGGATAAAGAGGTGGAGAAGGCTTCGAGAC-G 1563
Query 1468 ATTGGACCAGTGGGAAGAGAGCCGTGAGCCGCTT-TTGAAGCAATAAA-TAAATTAATT 1524
||||||||||||||| || | | | |||||| || |||||||||| ||||| ||||
Sbjct 1564 ATTGGACCAGTGGGAGGACA-CA-TCT-CCGCTTCTT-AAGCAATAAAATAAATAAATT 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5