BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475143
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 | ... 2239 0.0
AT1G11630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 713 0.0
> AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336
| chr1:22865004-22866615 REVERSE LENGTH=1612
Length=1612
Score = 2239 bits (1212), Expect = 0.0
Identities = 1315/1365 (96%), Gaps = 5/1365 (0%)
Strand=Plus/Plus
Query 1 TCTCCGTCTGCTTCTCCATTTCACAGTCGTCTTCTTCATCTAAAACCCTAAGAAAACAAC 60
||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3 TCTCCGTCTTCTTCTTCATTTCACAGTCATCTTCTTCATCTAAAACCCTAAGAAAACAAC 62
Query 61 AATGGCGTTACTCTCTCGAATCCGTTCATCAACCTCTCTCTTCCGTCACCTCAACGCATC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 AATGGCGTTACTCTCTCGAATCCGTTCATCAACATCTCTCTTCCGTCACCTCAACGCATC 122
Query 121 ACCCCAAATCCGATCACTCTCCTCCGCTTCAACAATCCTCTCACCAGATTCAAAAACTCC 180
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 123 ACCACAAATCCGATCACTCTCCTCGGCTTCAACAATCCTCTCACCAGATTCAAAAACTCC 182
Query 181 TCTCACTAGCAAAGAAAAAAGCAAAGCAGCTCTTTCTCTTCTCAAATCCGAGAAAGATCC 240
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 183 TCTCACAAGCAAAGAAAAAAGCAAAGCAGCTCTCTCTCTTCTCAAATCCGAGAAAGATCC 242
Query 241 AGATCGTATCCTCGAAATCTGCCGTGCAGCTTCTCTTACTCCAGATTGTCACATAGATCG 300
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 243 AGATCGTATCCTCGAAATCTGCCGTGCAGCTTCTCTTACTCCAGATTGCCGCATAGATCG 302
Query 301 AATCGCTTTCTCCGCCGCCGTCGAGAATCTCGCCGAGAAGAAACATTTCTCCGCTGTATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AATCGCTTTCTCCGCCGCCGTCGAGAATCTCGCCGAGAAGAAACATTTCTCCGCTGTATC 362
Query 361 GAATCTCCTCGATGGATTCATCGAAAATC-GACAAGATCTCAAATCGGAACGTTTCGCTG 419
|||||||||||| |||||||||||||| | ||| ||||||||||||||||||||| ||||
Sbjct 363 GAATCTCCTCGACGGATTCATCGAAAA-CAGACCAGATCTCAAATCGGAACGTTTTGCTG 421
Query 420 CTCACGCTATTGTTTTGTATGCTCAAGCGAATATGCTTGATCACTCTTTAAGGGTTTTTC 479
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 422 CTCACGCCATTGTTTTGTATGCTCAAGCTAATATGCTTGATCACTCTTTAAGAGTTTTTC 481
Query 480 GTGATCTTGAGAAATTTGAAATCCCTCGTACGGTGAAGTCTTTAAACGCTCTTCTCTTTG 539
||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 482 GTGATCTCGAGAAATTCGAAATCTCTCGTACGGTGAAGTCTTTAAACGCGCTTCTCTTTG 541
Query 540 CTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTTACATTGAGATGCCTAAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTTACATTGAGATGCCTAAGA 601
Query 600 TGTATGGGATTGAACCTGATCTTGAGACTTATAATCGTATGATCAAAGTGTTCTGTGAAT 659
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 602 TGTATGGAATTGAACCTGATCTCGAGACTTATAATCGTATGATCAAAGTGTTTTGTGAAT 661
Query 660 CCGGTTCAGCGAGTTCGGCGTACTCCATTGTTGCGGAGATGGAGAGGAAAGGGATAAAGC 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CCGGTTCAGCGAGTTCGTCGTACTCCATTGTTGCGGAGATGGAGAGGAAAGGGATAAAGC 721
Query 720 CGAATAGTTCTAGCTTTGGTTTGATGATTTCTGGATTTTATTCAGAGGATAAGAATGATG 779
|||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct 722 CGAATAGTTCAAGCTTTGGTTTGATGATTTCTGGGTTTTATGCAGAGGATAAGAGTGATG 781
Query 780 AAGTAGGGAAAGTGTTGGTGATGATGAAAGATCGCGGTGTTAATATCGGTGTTTCGACTT 839
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 782 AAGTAGGGAAAGTGTTGGCGATGATGAAAGATCGTGGTGTTAATATCGGTGTTTCGACTT 841
Query 840 ATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAGAAATCTAAGGAAGCAAAGGCTTTGC 899
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 842 ATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAGAAATCTAAGGAAGCGAAGGCTTTGC 901
Query 900 TTGATGGGATGTTATCTGCAGGGATGAAACCGAATACGGTTACTTATAGCCATTTGATTC 959
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 902 TTGATGGGATGTTATCTGCAGGGATGAAACCGAATACGGTAACGTATAGCCATTTGATTC 961
Query 960 GTGGGTTTTGCAATGAAGATGATTTCGAGGAAGCGAAGAAGTTGTTTAAGGTTATGGTGA 1019
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 962 ACGGGTTTTGTAATGAAGATGATTTCGAGGAAGCGAAGAAGTTGTTTAAGATTATGGTGA 1021
Query 1020 ACAGAGGATGTAAGCCTGATAGTGAGTGTTACTTCACTCTTATATATTACTTGTGCAAAG 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1022 ACAGAGGATGTAAGCCTGATAGTGAGTGTTACTTCACTCTTATATATTACTTATGCAAAG 1081
Query 1080 GAGGAGACTTTGAGACGGCTTTG-GTTCTTTGTAAAGAGAGTATGGAGAAGAATTGGGTT 1138
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1082 GAGGAGACTTTGAGACGGCTTTGAGT-CTTTGTAAAGAGAGTATGGAGAAGAATTGGGTT 1140
Query 1139 CCGAGTTTTAGTATCATGAAGTCGCTTGTTAACGGACTAGCTAAAGATTCGAAAGTCGAC 1198
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 CCGAGTTTTAGTATCATGAAGTCGCTTGTTAACGGACTAGCTAAGGATTCGAAAGTCGAA 1200
Query 1199 GAAGCAAAGGAGCTCATTGGGCAAGTAAAAGAGAAGTTCACTAGAAACGTCGAGTTGTGG 1258
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1201 GAAGCAAAGGAGCTTATTGGGCAAGTGAAAGAGAAGTTCACTAGAAACGTTGAGTTGTGG 1260
Query 1259 AATGAAGTCGAAGCCGCATTACCGCAATGAATCAAAAGATAGTTCCCGAGATCGGTATTT 1318
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AACGAAGTCGAAGCCGCATTACCGCAATGAATCAAAAGATAGTTCCCGAGATCGGTATTT 1320
Query 1319 TCAAA-TTTTACGAATTTTCTCTCTTCATTTGTCAGCAATGCAAT 1362
||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 TCAAAATTTTACGAATTTTCTCTCTTCATTTGTCAGCAATGAAAT 1365
> AT1G11630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:3912902-3914407 REVERSE LENGTH=1506
Length=1506
Score = 713 bits (386), Expect = 0.0
Identities = 899/1137 (79%), Gaps = 73/1137 (6%)
Strand=Plus/Plus
Query 180 CTCTCACTAGCAA--AGAA-AAAAGCAAAGCA-GCTCTTTCTCTTCTCAAATCCGAGAA- 234
||||||||||||| |||| || ||| || | |||| || |||||||||||||||||
Sbjct 123 CTCTCACTAGCAAGCAGAAGAAGAGCCGAG-ATACTCTCTCCCTTCTCAAATCCGAGAAT 181
Query 235 AGATCCAGATCGTATCCTCGAAATCTGCCG-TGCAGCTTCTCT-TACTCCAGATTGTCAC 292
| |||| ||||| ||||||||||||||||| | || |||| || | | || |||| ||||
Sbjct 182 A-ATCCTGATCGAATCCTCGAAATCTGCCGATCCA-CTTCACTCT-CACCTGATTATCAC 238
Query 293 ATAGATCGAATCGCT-TTCTCCGCCGCCGTCGAGA-ATCTCGCCGAGA-AGAAACATTTC 349
| || || ||| | ||||||| || || | || | || | ||||| ||||||| |||
Sbjct 239 GTCGACCGTATC-ATCTTCTCCGTTGCGGTGGTGACA-CTAG-CGAGAGAGAAACACTTC 295
Query 350 -TCCGCTGTATCGAATCTCCTCGATGGATTCATCGAAAATCGACAAGATCTC-AAATCGG 407
| |||||||||| | || ||||| || |||||| |||| | || |||| | ||||| |
Sbjct 296 GT-CGCTGTATCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATC-CAAAATCCG 353
Query 408 A-ACGTTTCGCTGCT-CACGCTATTGTTTTGTATGCTCA-AGCGAATATGCTTGATC-AC 463
| | ||||||| | | | || ||| | | || | || ||||||||||||||||| |
Sbjct 354 AGA-GTTTCGCAG-TCCGTGCCATTATCCTATACG-GCAGAGCGAATATGCTTGATCGA- 409
Query 464 TCTTTA-AGGGTTTTTCGTGATCTTGAGAAATTTGAAATCCCTCGTACGGTGAAGTCTTT 522
||| || | ||||| | || ||| ||| || ||||| | |||||||||||| |
Sbjct 410 TCTATACA-AACATTTCGCAACCTCGAGCAATACGAGATCCCAAGGACGGTGAAGTCTCT 468
Query 523 AAACGCTCTTCTCTTT-GCTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTT 581
||| |||||||| ||| ||||||||| | |||||||||||||||||||| || | || |
Sbjct 469 AAATGCTCTTCT-TTTCGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTCT 527
Query 582 ACATTGAGATGCCTAAGATGTATGGGATTGAACCTGATCTTGAGACTTATAATCGTATGA 641
|| | || ||||| ||||||||||| |||||||||||||| || ||||| ||| | ||||
Sbjct 528 ACCTCGAAATGCCGAAGATGTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGA 587
Query 642 TCAAAGTGTTCTGTGAATCCGGTTCAGCGAGTTCGGCGTACTCCATTGTTGCGGAGATGG 701
| | ||| || |||||||| |||||| ||||||| | |||||||||||||| |||||||
Sbjct 588 TTAGAGTCTTGTGTGAATCAGGTTCAACGAGTTCATCATACTCCATTGTTGCAGAGATGG 647
Query 702 AGAGGAAAGGGATAAAGCCGAATAG-TTCTAGCTTTGGTTTGATGATTTCTGGATTTTAT 760
|||||||| |||||||||| || || | ||||||||||||| |||||| ||| |||| |
Sbjct 648 AGAGGAAATGGATAAAGCC-AACAGCTGCTAGCTTTGGTTTAATGATTGATGG-TTTT-T 704
Query 761 TC-A-GAGGATAAGAATGATGAAGTAG-GGAAAGTGTTGGTG-ATGATGAAAG-ATCGCG 815
| | ||||| ||| ||||||||| | |||||||| | | | |||||| | | || |
Sbjct 705 ACAAGGAGGAGAAGTTTGATGAAGT-GAGGAAAGTGAT-GAGAATGATGGATGAAT-TTG 761
Query 816 GTGTTAATATCGGTGTTTCGACTTATAACATTAGGATTCAGA-GTTTGTGTAAGAGGAAG 874
||||| || | ||||| | || || ||||||| |||||| | |||||||||| ||||||
Sbjct 762 GTGTTCATGTTGGTGTAGCTACATACAACATTATGATTCA-ATGTTTGTGTAAAAGGAAG 820
Query 875 AAATCT-AAGGAAGCAAAGGCTTTGCTTGATGGGATGTTA--TC-TGCAGGGATGAAACC 930
|||||| | ||||||||||| ||| |||||||| |||| || || | |||||| |||
Sbjct 821 AAATCTGCA-GAAGCAAAGGCGTTGATTGATGGG--GTTATGTCTTGTA-GGATGAGACC 876
Query 931 GAA-TACGGTTACTTA-TAGCCATTTGATTCGTGGGTTTTGCAATGAAGATG-ATTTCGA 987
|| | | || || || | | | |||||||| ||||||||||| ||| || | |||| ||
Sbjct 877 AAACT-CTGTGACGTATTCG-CTTTTGATTCATGGGTTTTGCAGTGAGGA-GAATTTGGA 933
Query 988 GGAAGCGAAGAAGTTGTTTAAGGTTATGGTGAACAGA-GGATGTAAGCCTGATAGTGAGT 1046
||||| | ||| |||||| ||||||||||| | | |||| |||||||||||||| |
Sbjct 934 TGAAGCTATGAATTTGTTTGAGGTTATGGTGTGTA-ATGGATACAAGCCTGATAGTGAAT 992
Query 1047 GTTACTTCACTCTT-ATATATTACTTGTGCAAAGGAGGAGACTTTGAGACGGCTTTGGTT 1105
||||||||||| || ||| ||| ||||| |||||||| ||||||||||| |||||| |
Sbjct 993 GTTACTTCACT-TTGATACATTGTTTGTGTAAAGGAGGGGACTTTGAGACAGCTTTGATC 1051
Query 1106 CTTTGTAAAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTCGCTT 1165
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1052 CTTTGTAGAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTGTCATGAAGTGGCTT 1111
Query 1166 GTTAACGGACTAGCTAAA--GATTCGAAAG-TCGACGAAGCAAAGGAGCTCATTG-GGCA 1221
||||| |||||||| || | ||| |||| |||| ||||||||||||||||||| || |
Sbjct 1112 GTTAATGGACTAGC-AAGTCG-TTC-AAAGGTCGATGAAGCAAAGGAGCTCATTGCGGTA 1168
Query 1222 AGTAAAAGAGAAGTTCACTAGAAACGTCGAGTTGTGGAATGAAGTCGAAGCCGCATT 1278
|| ||||||||||| || ||||| || || |||||||||||||||||||| |||||
Sbjct 1169 -GTTAAAGAGAAGTTTACCAGAAATGTGGACTTGTGGAATGAAGTCGAAGCTGCATT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5