BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475144
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61860.1 | Symbols: | Protein kinase superfamily protein | ... 1869 0.0
> AT1G61860.1 | Symbols: | Protein kinase superfamily protein
| chr1:22862857-22864619 REVERSE LENGTH=1392
Length=1392
Score = 1869 bits (1012), Expect = 0.0
Identities = 1131/1189 (95%), Gaps = 6/1189 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCAACAACTCGGACCTAATTCGCCTAGA 60
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1 ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCATCAGCTTGGACCTAATTCGCCTAGA 60
Query 61 GATTCATTTGATGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCTCTG 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATTCATTTGACGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCACTG 120
Query 121 TTCACATTTCGCTCACACCGAAAAGGAAGCTGCAGGCAGAAGTATATAACAGAGGAGATA 180
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 121 TTCACATTTCGCTCACATCGGAAAGGAAGCTGCAGGCAGAAGTATATAACGGAAGAGATA 180
Query 181 AAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAACTAATAGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAGCTAATAGCT 240
Query 241 GCAACCGATAATTTCAGCATGGATTGTATGATTGGAGAAGGCGGTTTCGGAAGAGTCTAC 300
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 241 GCAACCGACAATTTCAGCATGGATTGTATGATTGGTGAAGGCGGTTTTGGAAGAGTCTAC 300
Query 301 AAAGGGTTCCTCAGCAGTCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGA 360
|||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGGTTTCTCACCAGCCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGG 360
Query 361 TTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTGATGGTATTGAGTTTGGCTCAACATCCA 420
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 361 TTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTAATGGTATTGAGTCTGGCTCAACATCCA 420
Query 421 AACCTTGTCAATCTCATTGGCTATTGCGTGGAAGACGACCAACGAGTCCTCGTTTACGAA 480
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 421 AACCTTGTCAATCTCATTGGCTATTGCGTCGAAGACGAGCAACGAGTCCTCGTTTATGAA 480
Query 481 TTCATGCCCAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAGAGG-CACCAAG 539
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 481 TTCATGCCTAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAG-GGTCACCAAG 539
Query 540 TCTAGACTGGTTCACGAGAATGCGGATAGTGCATGGTGCAGCTAAAGGGCTCGAGTACTT 599
||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 540 TCTAGACTGGTTCACCAGAATGCGGATAGTGCACGGAGCAGCGAAAGGGCTCGAGTACTT 599
Query 600 GCACGATTATGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTT 659
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCACGACTACGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTT 659
Query 660 ACAATCTGATTTCAACTCAAAGCTATCAGATTTTGGGTTAGCTAGGCTTGGACCAACTGA 719
||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 660 ACAATCTGACTTCAACTCAAAGCTATCGGATTTCGGGTTAGCTAGACTTGGACCAACTGA 719
Query 720 AGGCAAAGATCATGTGTCGACTAGAGTCATGGGAACATACGGATACTGTGCTCCTGAATA 779
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AGGCAAAGATCATGTGTCCACAAGAGTCATGGGAACATACGGATACTGTGCCCCTGAATA 779
Query 780 CGCGATGACTGGTCAACTCACTGCTAAATCCGATGTTTACAGCTTCGGTGTTGTCCTCCT 839
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 780 TGCGATGACCGGTCAACTCACTGCTAAATCCGATGTCTACAGTTTCGGTGTTGTCCTTCT 839
Query 840 TGAGATAATTTCTGGGAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTT 899
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGATCATTTCCGGAAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTT 899
Query 900 GATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCACAGATTGTGGATCC 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 GATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCGCAGATTGTGGATCC 959
Query 960 AAATCTAGAAGGGAATTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCAAT 1019
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AAATCTAGATGGGAACTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCGAT 1019
Query 1020 GTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGA 1079
Query 1080 GTTCTTGGCTAAGCCTATAGAGGTTGTTGATAACACTAATACTACTCCTGCCGCCTCTGC 1139
|||||||||||||||||||||||| |||||||||||||| |||||||||||| | || |
Sbjct 1080 GTTCTTGGCTAAGCCTATAGAGGTGGTTGATAACACTAACACTACTCCTGCCTC-TC--C 1136
Query 1140 TACTCAGACATCATCATCTGATTCATAAAACTAAttttt-ttttCTTTT 1187
|||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1137 TACTCAGACATCATCATCTGATTCATCAAACTAATTTTTATTTTCTTTT 1185
Score = 239 bits (129), Expect = 6e-62
Identities = 143/149 (96%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 1171 TAA-tttttttttCTTTTAACGTAAAATCCAAGAAAAGTAATTAGGGTTAGAGTTCGAAG 1229
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1203 TAAGTTTTTTTTTCTTTTAACGTAAAACCCAAGAAAAGTAATTAGGGTTAGAGTTCGAAG 1262
Query 1230 TCAATCGGATGCAAAAACAATTCTTTGTAATATGGTGTAATTTGGCATTGGGGAGATCGC 1289
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TCAATCGGATGCAAA--CAGTTCTTTGTAATATGGTGTAATTTGGCATTGGGGAGATCGC 1320
Query 1290 ATCATCTGTGAATCACATTATTAATCTCT 1318
||||||||||||||||||| |||||||||
Sbjct 1321 ATCATCTGTGAATCACATTGTTAATCTCT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5