BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475149
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61800.1 | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosp... 1947 0.0
AT4G03950.1 | Symbols: | Nucleotide/sugar transporter family p... 289 6e-77
> AT1G61800.1 | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate
translocator 2 | chr1:22824440-22826774 FORWARD LENGTH=1569
Length=1569
Score = 1947 bits (1054), Expect = 0.0
Identities = 1245/1333 (93%), Gaps = 29/1333 (2%)
Strand=Plus/Plus
Query 1 CACAATGATCTCTTCAATCAAACCAGCTTCATCGTCCATGTCCATCGCCATCTCCGG-AG 59
||||||| | ||||||||||||||| |||| || ||| | |||| ||| |||||||| |
Sbjct 84 CACAATGCTTTCTTCAATCAAACCATCTTCGTCTTCCTTCTCCACCGCTATCTCCGGCA- 142
Query 60 GCGTAAGGCGGTCAATTCCTACAAAGCTCAAGTTTTCTCCTTTAAC-CATCATCAAAAAC 118
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 143 GCGTAAGGCGGTCAATTCCTACAAAGCTCAAGTTTTCTCCTTT-ACTCATCATCAAAAAC 201
Query 119 TGCCATAACCAAAGCTTTAACTC-CA-G-TGTCTCGCATCAAAAGCCTCTACACATTACA 175
||||||||||||||||||||| | | | |||||| ||||||||||||||||||||| ||
Sbjct 202 TGCCATAACCAAAGCTTTAACGCTAATGTTGTCTCCCATCAAAAGCCTCTACACATTTCA 261
Query 176 TCTACTTCGAATTTCAAGCGTGGTGAGGTCAAAGTCGAAGCTTACGAGGCAGATCGATCT 235
||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 262 TCTGCTTCGAATTTCAAGC---GTGAGGTCAAAGTCGAAGCTTACGAGGCCGATCGTTCC 318
Query 236 CGTCCACTCGACATTAACATCGAGCTTCCCGACGAACAATCCGCGCAGAAACTGAAAATC 295
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 319 CGTCCACTGGACATCAACATCGAGCTTCCCGATGAACAATCCGCGCAGAAACTGAAAATC 378
Query 296 GGAATCTATTTCGCGACTTGGTGGGCACTTAACGTTGTTTTCAACATCTACAACAAGAAA 355
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 379 GGAATCTACTTCGCAACTTGGTGGGCACTTAACGTTGTCTTCAACATCTACAACAAGAAA 438
Query 356 GTCCTCAACGCTTTTCCTTATCCGTGGCTTACTTCGACGTTGTCTCTTGCTTGTGGTTCT 415
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 439 GTCCTCAATGCTTTTCCTTACCCGTGGCTTACTTCGACGTTGTCTCTCGCTTGTGGTTCT 498
Query 416 CTGATGATGCTTGTCTCTTGGGCTACTAGAATCGCAGATGCTCCTAAAACTGATATCGAT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 499 TTGATGATGCTTGTCTCTTGGGCTACTAGAATCGCAGATGCTCCTAAAACTGATCTCGAG 558
Query 476 TTCTGGAAAACTCTGTTCCCGGTCGCTTTAGCACACACGATAGGACACGTTGCAGCAACA 535
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 559 TTCTGGAAAACTCTGTTCCCGGTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACA 618
Query 536 GTGAGTATGTCAAAAGTAGCAGTTTCCTTCACACACATCATCAAAAGTGGTGAACCAGCG 595
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 619 GTGAGTATGTCAAAAGTAGCAGTTTCCTTCACACACATCATTAAAAGTGGTGAACCAGCT 678
Query 596 TTCAGTGTCTTGGTCTCAAGATTCTTCATGGGAGAGACTTTCCCTCTTCCTGTCTATCTC 655
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TTCAGTGTCTTAGTCTCAAGATTCTTCATGGGAGAGACTTTCCCTCTTCCTGTCTATCTC 738
Query 656 TCTCTCTTACCAATCATCGGAGGCTGCGCTCTCGCCGCCATCACAGAGCTTAACTTCAAC 715
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 739 TCTCTCTTACCAATCATCGGAGGCTGCGCTCTCGCGGCCATCACCGAGCTTAACTTCAAC 798
Query 716 ATCACTGGGTTTATGGGGGCAATGATATCGAATTTGGCATTTGTGTTTCGGAATATATTT 775
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 799 ATCACTGGGTTTATGGGGGCAATGATATCGAATTTGGCATTTGTGTTCCGGAATATCTTT 858
Query 776 TCGAAGAAAGGGATGAAAGGGAATTCAGTTAGCGGGATGAACTACTACGCTTGCTTATCG 835
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 859 TCGAAGAAAGGGATGAAAGGGAAGTCAGTGAGCGGAATGAACTACTACGCTTGCTTATCG 918
Query 836 ATGATGTCTCTTGTGATCCTCACTCCATTTGCTATTGCTGTCGAAGGTCCTCAAATGTGG 895
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 919 ATGATGTCTCTTGTGATCCTCACTCCATTTTCTATTGCCGTGGAAGGTCCTCAAATGTGG 978
Query 896 GCTGCTGGTTGGCAAAATGCGGTTTCTCAAGTCGGACCAAACTTTGTCTGGTGGGTAGTG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GCTGCTGGTTGGCAAAATGCGGTTTCTCAAGTCGGACCAAACTTTGTCTGGTGGGTAGTG 1038
Query 956 GCACAGAGTGTGTTTTACCATTTGTACAATCAGGTCTCATACATGTCGTTAGACCAGATT 1015
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1039 GCACAAAGTGTGTTTTACCATTTGTACAATCAGGTCTCATACATGTCATTAGACCAGATT 1098
Query 1016 TCGCCGTTGACTTTCAGTATCGGTAATACGATGAAGCGGATTTCCGTAATTGTTGCATCG 1075
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1099 TCGCCGTTAACTTTCAGTATCGGTAATACGATGAAGCGGATTTCCGTTATTGTTGCATCG 1158
Query 1076 ATCATCATTTTTCATACCCCGATTCAACCAGTTAATGCACTCGGTGCTGCCATTGCGATT 1135
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1159 ATCATCATTTTCCATACCCCGATTCAACCGGTTAATGCCCTCGGTGCTGCCATTGCGATT 1218
Query 1136 CTTGGAACTTTCCTCTACTCACAGGCGAAGCAGTGAGGATGGTTTAAGAGGCAGTTTTTT 1195
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1219 TTTGGAACTTTCCTCTACTCACAGGCGAAGCAGTGAGGATGGTTTAGGAGGCAGTTTTTT 1278
Query 1196 GGGTT--------AAAAC----T-AA--C-AA-AAGAGTAGTAGCTGGAGAGGAGAGAAC 1238
||||| |||| | || | || || || |||||| || |||||||||||
Sbjct 1279 GGGTTTGTTTTGCAAAAGAAAATGAAAACTAACAAAAG-AGTAGCCGGGGAGGAGAGAAC 1337
Query 1239 ATTCCGGTGAGATCAACATCGGAAAGTGTTTTTCCC-GGTCAATGGATATGAAGAAACTG 1297
||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||
Sbjct 1338 ATTCCGGTGAGATCAACATCGGAAAATGCTTTTCCCCGGTCCATGGATATGAAGAAACTG 1397
Query 1298 GAGCTTGAAGTTG 1310
|||||||||||||
Sbjct 1398 GAGCTTGAAGTTG 1410
> AT4G03950.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr4:1879518-1881111 FORWARD LENGTH=834
Length=834
Score = 289 bits (156), Expect = 6e-77
Identities = 260/308 (84%), Gaps = 15/308 (5%)
Strand=Plus/Plus
Query 701 GAGCTTAACTTCAACATCACT-GGGTTTATGGGGGCAATGATATCGAATTTGGCATTTGT 759
||||| |||||||| || | | |||||||||||||||||||||||||||||||| |||||
Sbjct 355 GAGCTCAACTTCAATATGA-TAGGGTTTATGGGGGCAATGATATCGAATTTGGCGTTTGT 413
Query 760 GTTTCGGAATATATTTTCGAAGAAAGGGA-TGAAAGGGAATTCAGTTAGCGGGATGAACT 818
|||||| || ||||| || ||||| |||| |||| ||||| ||||| || | |||||| |
Sbjct 414 GTTTCGTAACATATTCTCAAAGAA-GGGAATGAAGGGGAAGTCAGTGAGTGTGATGAATT 472
Query 819 ACTACGCTTGCTTATCGATGATGTCTCTTGTGATCCTCACTCCATTT-GCTA-TTGCTGT 876
|||| ||||||||||| |||||||||||| | || | ||||| ||| || | || ||||
Sbjct 473 ACTATGCTTGCTTATCTATGATGTCTCTTCTCATTGTTACTCC-TTTCGCCAATT-CTGT 530
Query 877 CGAAGGTCCTCAAATGTGGGCTGCTGGTTGGCAAAATGCGGTTTCTCAAGTCGGACCAAA 936
|||||||| ||||||||||||| |||||||||||| | || ||| || ||||||||||
Sbjct 531 GGAAGGTCCCCAAATGTGGGCTGATGGTTGGCAAAACGATGTCTCTAAA-TCGGACCAAA 589
Query 937 CTTTGTCT-G---GTGGGTAGTGGCACAGAGTGTGTTT-TACCATTTGTACAATCAGGTC 991
|||||||| | ||||||||||||||| ||||| ||| ||||||||||| ||||| |||
Sbjct 590 CTTTGTCTAGTAAGTGGGTAGTGGCACATAGTGT-TTTCTACCATTTGTATAATCAAGTC 648
Query 992 TCATACAT 999
||||||||
Sbjct 649 TCATACAT 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5