BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475152

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61780.1 | Symbols:  | postsynaptic protein-related | chr1:2...   726    0.0  


> AT1G61780.1 | Symbols:  | postsynaptic protein-related | chr1:22812615-22814153 
REVERSE LENGTH=641
Length=641

 Score =  726 bits (393),  Expect = 0.0
 Identities = 468/504 (93%), Gaps = 6/504 (1%)
 Strand=Plus/Plus

Query  1    TTTAGGCGCTAGGGTTTCTTCAT-CCAC-CTCTCCGAAGAAGAAGATGGTTTGCGACAAG  58
            |||||||| ||||||||||||||    | ||||| ||||||||||||||||||||| |||
Sbjct  93   TTTAGGCGTTAGGGTTTCTTCATATTTCTCTCTCGGAAGAAGAAGATGGTTTGCGATAAG  152

Query  59   TGTGAGAAGAAGTTATCTAAAGTGATAGTGCCAGATAAATGGAAGGATGGTGCTCGCAAT  118
            ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||
Sbjct  153  TGTGAGAAGAAGTTATCGAAAGTGATAGTTCCTGATAAGTGGAAGGATGGTGCTCGTAAT  212

Query  119  GTAACTGAAGGTGGTGGCCGTAAAATCAATGAGAACAAGCTTCTCTCTAAGAAGAATAGA  178
            ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  213  GTAACTGAAGGTGGTGGTCGTAAAATCAATGAGAATAAGCTTCTCTCCAAGAAGAATAGA  272

Query  179  TGGTCACCTTACAGTACCTGTACCACAAAATGCATGATCTGCAAGCAGCAAGTGCATCAA  238
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  273  TGGTCACCTTACAGTACCTGTACCACAAAATGTATGATCTGCAAGCAGCAAGTGCATCAA  332

Query  239  GATGGTAAATACTGTCACACATGTGCCTATAGCAAAGGAGTGTGCGCAATGTGCGGAAAG  298
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  333  GATGGTAAATACTGTCACACATGTGCCTATAGCAAAGGAGTGTGCGCAATGTGCGGGAAG  392

Query  299  CAAGTGTTGGACACCAAGATGTACAAGCAAAGCAATGTATAAACAAATGAGCAAGCATTT  358
            ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||
Sbjct  393  CAAGTGTTGGACACCAAGATGTACAAGCAAAGCAATGTATAAACAAATCCGCAAGCGTTT  452

Query  359  CACATTTTAGTTTCAGTCCCTTTGATGTCAACTTTGTATCCTCTCACTCATGTATTCCTT  418
            |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||  ||
Sbjct  453  CACATTTTAGTTTTTGTCCCTTTGATGTCAACGTTGTATCCTCTCACTCATGTATTTTTT  512

Query  419  TGTA-CTGGTTTCCTTCGGTTTTAGTATAACAAAACAAAATCTTGTTTG-TTCACAGTGT  476
            |||| | |||||||| |||||||| |||||| ||||| ||||||||| | ||||| ||||
Sbjct  513  TGTATC-GGTTTCCTCCGGTTTTAATATAACCAAACAGAATCTTGTT-GCTTCACTGTGT  570

Query  477  TTCTTGACTAATCATAAAGTTAAT  500
            ||||||||| ||||||||||||||
Sbjct  571  TTCTTGACTGATCATAAAGTTAAT  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5