BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475153
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61770.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1953 0.0
> AT1G61770.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:22810165-22812607 FORWARD LENGTH=1195
Length=1195
Score = 1953 bits (1057), Expect = 0.0
Identities = 1152/1197 (96%), Gaps = 9/1197 (1%)
Strand=Plus/Plus
Query 1 AAAAAAGGCCCAAAGAGTATTTTTCCTCTC-AATTCGCCGACGACTAATCACGAGATGGC 59
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 3 AAAAAAGGCCCAAAGAGTA-TTTTCCTC-CGAATTCGCCGACGACTAATCACGAGATGGC 60
Query 60 GCCGCCGGTGACGGAGCGGTGGTGCTTGGCTTTGATTCTTCTCTTTATCTCCTTATTCGT 119
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 61 GCCGCCGGTGACGGAGCGGTGGTGCTTAGCTTTGATTCTTCTCTTTCTCTCCTTGTTCGT 120
Query 120 CCAATCTTCGACGGCAATTTATTGCGGTGCTGAAGATTGTTATGCTCTTCTCGGAGTTGC 179
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CCAATCTTCAACGGCAATTTACTGCGGTGCTGAAGATTGTTATGCTCTTCTCGGAGTCGC 180
Query 180 TCAAGATGCGAACGCATCGGATATCAAGAGATCTTATTATAAGCTTTCTCTTCAACATCA 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TCAAGATGCGAACGCATCGGATATCAAGAGATCTTATTATAAGCTCTCTCTTCAACATCA 240
Query 240 TCCAGATAAGAATCCGGATCCTGAATCGAGGAAACTGTTTGTGAAAATCGCCACTGCTTA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 TCCAGATAAGAATCCGGATCCTGAATCGAGGAAACTGTTTGTTAAAATCGCCACTGCTTA 300
Query 300 TGAGATTTTGAAAGATAACACTACTCGGGCACAATATGATTATGCAATTGAACATCCAGA 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAGATTTTGAAAGATAATACTACTCGGGCACAATATGATTATGCAATTGAACATCCAGA 360
Query 360 AGAGGTATTTTACAACACCGCTCAATATTACCGGGCGAAATATGGACATAAGTCGGATCC 419
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 361 AGAGGTATTTTACAACACCGCTCAATATTACCGCGCGAAATATGGACATAAATCGGATCC 420
Query 420 CCGTGCTGTT-TTGGTTGGTCTATTGGTAGTTTTGTCTGCATTTCAGTATCTGAACAACG 478
|||||||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 421 CCGTGCTGTTCTT-GTTGGTCTATTGGTGGTTTTATCTGCATTTCAATATCTGAACAACG 479
Query 479 TGGCAAGGTATAATGAGGCTATAGCGACGGTTAAGCGAACACCTGCTTATAAAAATAAGC 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TGGCAAGGTATAATGAGGCTATAGCGACGGTTAAGCGAACACCTGCTTACAAAAATAAGC 539
Query 539 TCAAGGCATTAGAACTCGAACGCACGGGTGGAGTAACTAACAAAAAGAAGGGTTCAAAGC 598
||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct 540 TCAAGGCATTAGAACTCGAACGCACAGGTGGAGTAAGTAACAAGAAGAAGGGTTCAAAGC 599
Query 599 AGATTGACCAGAAACTACAGGAAGAGCTAAGCAACGAACTCGACTTACAAATCAAAGGAG 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 AGATTGACCAGAAACTACAGGAAGAGCTAAGCAACGAACTTGACTTACAAATCAAAGGAG 659
Query 659 CTGAAAAACCATCCGTCTGGGAACTTCTCGGTGTTCGATTCATTCTCCTACCATACACTA 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTGAAAAACCATCGGTCTGGGAACTTCTCGGTGTTCGATTCATTCTCCTACCATACACTA 719
Query 719 TCATTAAGCTTCTAGCATGGTACAGCAGTTGGGTGTGGAGATATAAGGTCAAGAAAGCTC 778
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCATTAAGCTTCTAGTATGGTACAGCAGTTGGGTGTGGAGATATAAGGTCAAGAAAGCTC 779
Query 779 CTTATTCATGGGAAGACGCATCGTACCTAACCCGAAGATCACTTAGTGTGCCTGCCGACG 838
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTATTCATGGGAAGACGCATCATACCTAACCCGAAGATCACTTAGTGTGCCTGCCGACG 839
Query 839 CATGGGCTAATCTAGATGAATATAGGAAGGAAGATCTGGTACAGAAAAGGCTGTGGGAGA 898
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 CATGGGCTAATCTAGATGAATATAGGAAGGAAGATCTGGTGCAGAAAAGGCTGTGGGAGA 899
Query 899 AGCAGAATCTTGAGAATTACTTTGCAGAAATGCGTAAAGAATCGAAGCGGAGAAGATAGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGCAGAATCTTGAGAATTACTTTGCAGAAATGCGTAAAGAATCGAAGCGGAGAAGATAGG 959
Query 959 -CTACTTGTCACTTACCATGCCAGGATACACAAGACAATTCAAGTTTCAGAGACACT-TT 1016
| ||||||| |||||||||| | |||||| || ||||||| |||||||||||||| ||
Sbjct 960 TC-ACTTGTCGCTTACCATGCAACGATACAAAATACAATTCGAGTTTCAGAGACACCATT 1018
Query 1017 TTTACCATTATCACTCTACTTTAATGTTATAAGAACGAACAAGTTACAAGAAGAGACAGT 1076
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1019 TTTACCATTATCACTCTACTTTAATGTTATAAGAACGAACCAGTTACAAGAAGAGACACT 1078
Query 1077 AGTATAATTGTACGGTACCAGGAACCAAATCTCAATTTGGCATATACAAGACGAA-TCAT 1135
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 1079 AGTATAATTGTACGGTACCAGGAACCAAATCTCAATTTGTCATATACAAGATGAAATCAT 1138
Query 1136 GTCTGTCAATGGACATGGTCCAGTTTTGACTCAATTTTGTTTAAAACAAATTTGCTC 1192
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1139 GTCTGTCAATGGACATGGTCCAGTTTTGACTCAGTTTTGTTTAAAACCAATTTGCTC 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58533835470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5