BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475156
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61730.1 | Symbols: | DNA-binding storekeeper protein-relat... 1463 0.0
AT4G00390.1 | Symbols: | DNA-binding storekeeper protein-relat... 623 1e-177
AT1G44810.1 | Symbols: | DNA-binding storekeeper protein-relat... 82.4 1e-14
> AT1G61730.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:22793219-22794703 REVERSE
LENGTH=1485
Length=1485
Score = 1463 bits (792), Expect = 0.0
Identities = 1053/1175 (90%), Gaps = 33/1175 (3%)
Strand=Plus/Plus
Query 67 GATTCCGATTT-CCTCCTTGAAAA-TTCCGATGACGAAGAAACTCAATCCTTTAGAAGAT 124
||||||||||| |||||||||||| |||| |||||||||||||||||||| | ||||||
Sbjct 97 GATTCCGATTTGCCTCCTTGAAAATTTCCAATGACGAAGAAACTCAATCCACTGGAAGAT 156
Query 125 CCACCAACCGCTTCTTCAAGCGACGACGATGACGTCGAGACTTCAGAAGCTGGTGAGGCT 184
|||||||| || ||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 157 CCACCAACGGCAACTTCAAGCGACGAAGATGACGTCGAGACTTCCGAAGCTGGTGAAGCT 216
Query 185 TCAGACGATTCTTCTTCATCTGAAGAAGAAC-AACCAATCAAAGCTCCAATCAAAACCCC 243
||||||||||| |||||||||||||||| || |||||||||| || ||||||| ||||
Sbjct 217 TCAGACGATTCCTCTTCATCTGAAGAAG-ACGTACCAATCAAAATTCGAATCAAATCCCC 275
Query 244 TTCCGccaccaccaccaccaccGCCGCC-GCT-GCTCCAGCAAAATCCACCGCCGCCGCT 301
||||||||| ||| || || | || || ||| |||| | | | || ||||||||
Sbjct 276 TTCCGCCACAACCGCCGCC-GCTCCTCCAGCTAAATCCACCGCCGT-CTCCACCGCCGCT 333
Query 302 GATTCAGATTCTGGATCCGAGACTGAAACAGATTCCGACTCTGAATCAACAAATCCACCG 361
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 334 GATTCAGATTCTGGATCCGAGACTGAAACAGATTCGGATTCTGAATCAACAAATCCACCG 393
Query 362 AATTCTGGATCTGGCAAAACAATCGCCGTCTCCGCCGTGAATCTAAAGAAGAAAGAGGAT 421
|||||||||||||| || |||||||| | | | ||||||||||||||||||||||||
Sbjct 394 AATTCTGGATCTGGGAAGACAATCGCTTTAAACACAGTGAATCTAAAGAAGAAAGAGGAT 453
Query 422 CCAACATCGTC--C-GCTGCTTTAGCTTTACCGGCGGTGAAATCAGGAACAAAACGGCCA 478
||||| ||||| | ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 454 CCAACGTCGTCGTCAGCTACTTTAGCTTTACCGGCGATGAAATCAGGAACAAAACGGCCA 513
Query 479 GCGAGTGAAGCTAC-GACGACGACTTCAACGAAACGTGTCAAGAAAGACGAAGAGAGTAT 537
|||||||||||| | | | ||||||||||||||||| || |||||||| ||||||||| |
Sbjct 514 GCGAGTGAAGCTGCTG-CTACGACTTCAACGAAACGAGTGAAGAAAGATGAAGAGAGTGT 572
Query 538 AAAGAAACCAGGAGCTTTTCAAAGACTATGGAGTGAAGAAGACGAAATCTCT-GTGTTAC 596
||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 573 GAAGAAACCAGGAGGTTTTCAAAGACTATGGAGTGAAGAAGACGAAATCT-TAGTGTTAC 631
Query 597 AAGGAATGATTGATTTCAAAGCTGATACAGGGAAGTCTCCTTATGAAGATACTAATGCGT 656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 632 AAGGAATGATTGATTTCAAAGCTGATACAGGGAAGTCTCCTTATGTAGATACTAATGCGT 691
Query 657 TTTACGAATTTC-TCAAGAAATCGATTAGCTTTGAGGTTAGTAAGAATCAGTTCATGGAT 715
|||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 692 TTTACG-ATTTCTTGAAGAAATCGATTAGCTTTGAGGTTAGTAAGAATCAATTCATGGAT 750
Query 716 AAGATTAGGAGTTTAAGGAAGAAGTATATTGGTAAAGAAGGAA--AA-GAACCTAGTTTT 772
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 751 AAGATTAGGAGTTTAAGGAAGAAGTATATTGGTAAAGAAGGAAGGAACGAACCTAGTTTT 810
Query 773 GTTAAAGCTCATGATAAGAAAGCTTTTGAATTGTCAAAGTTTATTTGGGGACCTAAAGGG 832
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 811 GTGAAAGCTCATGATAAGAAAGCTTTTGAATTGTCTAAGTTTATTTGGGGACCTAAAGGA 870
Query 833 ATTGCTCTTGATTCCAATGTTAAGTCGAATGGTGTATCGAAAAAGAGTGCGAAGAAGAAG 892
|| ||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 871 ATAGCTCTTGATTCTAATGTTAAGTCGAACGGTGTATCGAAAAAGAGTGTGGCGAAGAAG 930
Query 893 AAGATTGATTCTGTTAAGCAAGAGTTGGTTTTTGTTGGTGGTGGTTCTTCAAATACTAAT 952
||||||||||||||||||||||||||||| |||| |||||| | |||||| |||||
Sbjct 931 AAGATTGATTCTGTTAAGCAAGAGTTGGTGTTTGCCGGTGGT--T-CTTCAA---CTAAT 984
Query 953 GGTAAAAAAGTTGAAGATGGTGGTGATGATGATGGAGGTGATTGGTTTGATAACTCGTCT 1012
||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||
Sbjct 985 GGTAAAAAAGTTGAAGAAGATGGTGGTGATGATGGATGTGATTGGTTTGATAACTCGTCT 1044
Query 1013 CTTGTTCGAATGATTGCTGGTTTAGGAGTTGATGAGTATTATGTGAAGCAACAATGGAGT 1072
|||||| | ||||||||| |||| || ||||||||||||||||||||||| |||||||||
Sbjct 1045 CTTGTTAGGATGATTGCTAGTTTGGGTGTTGATGAGTATTATGTGAAGCAGCAATGGAGT 1104
Query 1073 TTGGTTCCGGTTGAGACTAAGAAGATTATTGAAGAGAAGT-TCAAGTTGTTGCAAGCTAA 1131
|||||| ||||||||| |||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1105 TTGGTTTCGGTTGAGAGTAAGAAGATTGTTGAAGAGAAGTAT-AAGTTGTTGCAAGCTAA 1163
Query 1132 GGAGCTTG-AATTTGTATTGGAGAAGACGAAGTTTTTGCAGGAGGT-GACGTCTATGATC 1189
|||| ||| ||||||| ||||||||||| ||||||||| | ||||| | | |||||| ||
Sbjct 1164 GGAG-TTGGAATTTGTGTTGGAGAAGACTAAGTTTTTGAATGAGGTTG-CTTCTATGTTC 1221
Query 1190 GTTGAAGCTTCGAAGAAAAA-CCATTAGATACATA 1223
||||||||||| ||||| || ||||||||||||||
Sbjct 1222 GTTGAAGCTTCTAAGAACAAGCCATTAGATACATA 1256
> AT4G00390.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:171497-172843 REVERSE
LENGTH=1347
Length=1347
Score = 623 bits (337), Expect = 1e-177
Identities = 566/670 (84%), Gaps = 41/670 (6%)
Strand=Plus/Plus
Query 291 CCGCCGCCGCTGATTCAGATTCTGGATCCGAGACTGAAACAGATTCCGACTCTGAATCAA 350
||||||| |||||||| |||||||| || |||| |||||||||||| || |||||||| |
Sbjct 320 CCGCCGCTGCTGATTCCGATTCTGGTTCGGAGAGTGAAACAGATTCGGATTCTGAATCGA 379
Query 351 CAAATCCACCGAATTCTGGATCTGGCAAAACAATCGCCGTCTCCGCCGTGAATCTAAAGA 410
| |||| ||||| |||||||| || ||||||| | || | | || |||||
Sbjct 380 CGGATCCTCCGAAATCTGGATCCGGTAAAACAA--------T-CG-C-T---TC-AAAGA 424
Query 411 AGAAAGAGGATCCAACATCGTC--C-GCTGCTTTAGCTTTACCGGCGGTGAAATCAGGAA 467
||||||| ||||| | ||||| | ||| ||||||||||||||||||||||||| |||
Sbjct 425 AGAAAGATGATCCGTCGTCGTCGACTGCTACTTTAGCTTTACCGGCGGTGAAATCTGGAG 484
Query 468 CAAA-ACGGCCAGCGAGTGAAGCTACGACGACGACTTCAACGAAACGTGTCAAGAAAGAC 526
|||| | || |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 485 CAAAGA-GGGCAGCGAGTGAAGCT--G-CGACGACTTCAACGAAACGAGTCAAGAAAGAT 540
Query 527 GAAGAGAGTATAAAGAAACCAGGAGC-TTTTCAAAGACTATGGAGTGAAGAAGACGAAAT 585
||||||||| ||||||| |||| | | ||||||||||||||||||||| || ||||||||
Sbjct 541 GAAGAGAGTGTAAAGAAGCCAGCA-CTTTTTCAAAGACTATGGAGTGACGATGACGAAAT 599
Query 586 CTCTGTGTTACAAGGAATGATTGATT-TCAAAGCTGATACAGGGAAGTCTCCTTATGAAG 644
|||| |||||||||||||||| |||| || | |||||||||||||||||||||| | ||
Sbjct 600 CTCTATGTTACAAGGAATGATAGATTATC-ATGCTGATACAGGGAAGTCTCCTTCCGCAG 658
Query 645 ATACTAATGCGTTTTACGAATTTCTCAAGAAATCGATTAGCTTTGAGGTTAGTAAGAATC 704
||||||||||||||||||| || | |||||||| || ||||||||||||||||||| ||
Sbjct 659 ATACTAATGCGTTTTACGAGTTCCAGAAGAAATCTATCAGCTTTGAGGTTAGTAAGAGTC 718
Query 705 AGTTCAT-GGATAAGATTAGGAGTTTAAGGAAGAAGTATATTGGTAAAGAAGGAAA--A- 760
| ||| | ||||||| |||||||||||||||||||||| || |||||||||||| |
Sbjct 719 AATTC-TCGGATAAGGTTAGGAGTTTAAGGAAGAAGTACCGTGCTAAAGAAGGAAAGGAC 777
Query 761 GAACCTAGTTTTGTTAAAGCTCATGATAAGAAAGCTTTTGAATTGTCAAAGTTTATTTGG 820
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAACCTAGGTTTGTGAAAGCTCATGATAAGAAAGCTTTTGAATTGTCAAAGTTTATTTGG 837
Query 821 GGACCTAAAGGGATTGCTCTTGATTCCAATGTTAAGTCGAATGGTGTATCGAAAAAGAGT 880
||||||||||| || ||||||||||| |||| |||||| || ||||| ||||||||||||
Sbjct 838 GGACCTAAAGGAATAGCTCTTGATTCTAATGCTAAGTCCAACGGTGTGTCGAAAAAGAGT 897
Query 881 GCGA--A-GAAGAAGAAGA---TTGATTCTGTTAAGCAAGAGTTGGTTTTTGTTGGTGGT 934
|||| | || |||| ||| |||||||||| |||||||| |||| |||||||||| |
Sbjct 898 GCGAGTAAGACGAAGGAGAAGCTTGATTCTGTAAAGCAAGACTTGGCGTTTGTTGGTG-T 956
Query 935 GGTTCTTCAA 944
||||||||
Sbjct 957 --TTCTTCAA 964
> AT1G44810.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:16923543-16924821 FORWARD
LENGTH=1279
Length=1279
Score = 82.4 bits (44), Expect = 1e-14
Identities = 77/91 (85%), Gaps = 9/91 (10%)
Strand=Plus/Plus
Query 85 GAAAATTCCGATG-ACGAAGAAA---CTCAATCCT-TTAGAAGATCCACCAACCGCTTCT 139
||||||||||||| || |||||| ||||| ||| || |||||||||||||||||||||
Sbjct 69 GAAAATTCCGATGAAC-AAGAAACTTCTCAACCCTCTT-GAAGATCCACCAACCGCTTCT 126
Query 140 TCAAGCGACGACGAT-GACGTCGAGACTTCA 169
|||||||| |||| | |||| |||| ||||
Sbjct 127 TCAAGCGAAGACG-TCGACGAAGAGATTTCA 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5