BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475165
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61620.1 | Symbols: | phosphoinositide binding | chr1:22737... 1762 0.0
> AT1G61620.1 | Symbols: | phosphoinositide binding | chr1:22737543-22739430
FORWARD LENGTH=1264
Length=1264
Score = 1762 bits (954), Expect = 0.0
Identities = 1062/1113 (95%), Gaps = 11/1113 (1%)
Strand=Plus/Plus
Query 45 CCCAATTCAATCTTCGTCGCCAATATGCCGCAGAGACACTCGAAGAACAACAATGATCTT 104
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 87 CCCAATTCAATATTCGTCGCCAATATGCCGCAAAGACACTCGAAGAACAACAATGATCTT 146
Query 105 GCCTATTTCACTTACGACGAGAAGAAGAAGTTAGGTTATGGAACTCAGAGAGAGAGATTG 164
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GCGTATTTCACTTACGACGAGAAGAAGAAGTTAGGTTATGGAACTCAGAGAGAGAGATTG 206
Query 165 GGGAAAGACTCGATTAAGCCCTTCGATGCTTGTTCTCTCTGCTTGAAGCCTTTCATTGAT 224
|||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 207 GGGAGAGACTCGATCAAACCCTTTGATGCTTGTTCTCTCTGCTTGAAGCCTTTCATTGAT 266
Query 225 CCGATGTGTTGCCATAAAGGTCATGTCTTTTGCAGAGAGTGTATCCTCGAATGTTTCCTT 284
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 267 CCGATGTGTTGCCATAAGGGTCATGTCTTTTGCAGAGAGTGTATACTTGAATGTTTCCTT 326
Query 285 GCTCAGAAGAAAGATATCCAAAGGAGGCTTGCTGCACATACGTCTCAAAAGAAGCAAGAT 344
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 GCTCAGAAGAAAGATATCCAAAGGAGGCTTGCTGCACATTCGTCTCAAAAGAAGCAAGAT 386
Query 345 AAGGATGAAGAAGAAGAGAGGCTAATGTTACAAAAGGCGAGAGAGCTCGACGAATTTGAT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AAGGATGAAGAAGAAGAGAGGCTAATGTTACAAAAGGCGAGAGAGCTCGACGAATTTGAT 446
Query 405 CAGCAAAACCATAGTGCAATGCCTCGAAACAGTGATAAGAACCACAACGATGACAAGAAT 464
||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||
Sbjct 447 CAGCAAAACCATAGTGCAATGCCTCGAAACAGTGACAAGAATCACAACGAAGATAAGAAT 506
Query 465 GGTTTTCATGGTGCGAACAGTGTGAAGACGACTTCCTTTGAAGAAGAAGCGCTTAAGACG 524
||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 507 GGTTTTCATGGGGCAAACAGTGTGAAGACGACTTCCTTTGAAGAAGAAGCGCTTAGGACA 566
Query 525 ATGAAAGCCTTCTGGCTCCCATCAGCTACACCAGCAGCTTCGGTCAGAGTAGATGCTCCA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATGAAAGCCTTCTGGCTCCCATCAGCTACACCAGCAGCTTCGGTCAGAGTAGATGCTCCA 626
Query 585 GAAACTCACACAGTCTGTCCAGAAGGCAAAGAGAAGCTCAAGCTTAAGAACCTCTTTGCA 644
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 627 GAAACTCACACAGTCTGTCCAGAGGGCAAAGAGAAGCTCAAGCTTAAGAACCTCTTTGCA 686
Query 645 ATTCGTTTCACGGAAGACAACAGCGAAGAAGAAGAGAACAAGCCGAAATCAGCATCTTCA 704
||||||||||| ||||||||||||||||| ||||||| |||| | |||||||||||||||
Sbjct 687 ATTCGTTTCACAGAAGACAACAGCGAAGAGGAAGAGACCAAGACAAAATCAGCATCTTCA 746
Query 705 AGCTCTTATGACAAATCCTACATCTGCCCGAGCTGCAAAGTCACTCTCACCAACACAATG 764
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AGCTCTTATGATAAATCCTACATCTGCCCGAGCTGCAAAGTCACTCTCACCAACACAATG 806
Query 765 TCCCTCGTGGCACTTAGCTCATGCGGACATGTTTTCTGCAAGAAGTGTGCTGAAAAGTTT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 807 TCCCTCGTGGCACTTAGCTCATGCGGACATGTTTTCTGCAAGAAGTGTGCTGAGAAGTTT 866
Query 825 ATGCCCGTCGACAAAGTCTGTCTTGTGTGTGACAAGCCTTGCAAGGACAGGAACTTGGTT 884
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 867 ATGCCCGTCGACAAAGTCTGTCTTGTGTGTGACAAACCTTGCAAGGATAGGAACTTGGTT 926
Query 885 GGGTTAAAGAAAGGAGGCACAGGTTTCGCTGAGCACGACGATCATCTTGAGGCTAAGGAG 944
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGGTTAAAGAAAGGAGGCACGGGTTTCGCTGAGCACGACGATCATCTTGAGGCTAAGGAG 986
Query 945 TACAAGCATTTGGGTAGTGGCTCTGGTTTGGGGCTTGTGAGGCCGGTTAAGACATGATGT 1004
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 987 TACAAGCATTTGGGTAGTGGATCTGGTTTGGGGCTTGTGAGGCCGGTTAAGACATGATGT 1046
Query 1005 AACCGCAACAAATGTTCTATTCCAATTACAGAAAAGTATCCTTGATTTTGTATACATTAC 1064
|||| || |||||||||| ||||| |||||||||| |||||||||||||||| | | ||
Sbjct 1047 AACCACATCAAATGTTCTGTTCCAGTTACAGAAAA-TATCCTTGATTTTGTA-A--T-AC 1101
Query 1065 ACTCCTTATGGCCTGTATCCTTTGCTACAACTAAGAGACACTGCTTTCTCTATTTTGGCT 1124
| | ||||| |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1102 --T--T-ATGGCTTGTATCCTTTGCTACAACTAAGAGACGCTGCTTTCTCCATTTTGGCT 1156
Query 1125 CTTGATTTCGTCCTTTTGATCAGATCCTATTTG 1157
|||| ||| |||||||||||| |||||||||||
Sbjct 1157 CTTGGTTT-GTCCTTTTGATCGGATCCTATTTG 1188
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1155 TTGATCAATTCAAATATTCTTCTTTTAGGC 1184
||||||||||||||||||||||||||||||
Sbjct 1235 TTGATCAATTCAAATATTCTTCTTTTAGGC 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5