BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475167
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61600.1 | Symbols: | Protein of unknown function (DUF1262)... 1616 0.0
> AT1G61600.1 | Symbols: | Protein of unknown function (DUF1262)
| chr1:22729816-22731182 FORWARD LENGTH=1266
Length=1266
Score = 1616 bits (875), Expect = 0.0
Identities = 1152/1278 (90%), Gaps = 49/1278 (4%)
Strand=Plus/Plus
Query 1 ATGTACGTGACAAGGACATTGTCGCAGTTCAGAAAATATCAGAAGACGCTCTCGGAGGAG 60
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTACGTGACGAGAACATTGTCGCAGTTCAGAAAATATCAGAAGACGCTCTCGGAAGAG 60
Query 61 TCACCGGAAGGTCCGTTTTCCGGTGTTCTAGTTATAACAGATGAAGAAGCCGAAACAGAG 120
||||||||||||||||| ||||| ||| | ||||| |||||||||||||| |||||||||
Sbjct 61 TCACCGGAAGGTCCGTTCTCCGGCGTTTTGGTTATCACAGATGAAGAAGCTGAAACAGAG 120
Query 121 GACACGTTCTGTTTCGGGATGTGTACGAGGACAAAAATCGAGAAGCTTCCGTTACCTCAA 180
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GATACGTTCTGTTTCGGGATGTGTACGAGGACAAAAATAGAGAAGCTTCCGTTACCTCAG 180
Query 181 GACAAGATCTTATCCGTTGTTCACTTAGACAGTTCTGGTAACAGAGAGACTTCGGTTAAG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACAAGATCTTATCAGTTGTTCACTTAGACAGTTCTGGTAACAGAGAGACTTCGGTTAAG 240
Query 241 AAGGTCTTGTTCATACCGGCTCTCGATCAACCATTGTCTTCAAATCGGTATTACGTTGTT 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 AAGGTCTTGTTCATACCGGCTCTCGATCAACCTTTGTCTTCCAATCGGTATTACGTTGTT 300
Query 301 CACGCTAGAGGCAGATACAAAGGAAAAGTTTCCGTGTGTTCTAGGGAGATAGAGAAAGGG 360
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 CACGCTAGAGGCAGACACAAAGGGAAAGTTTCCGTGTGTTCTAGAGAGATAGAGAAAGGG 360
Query 361 GTATGTTGTTTTCCGGATATCTTGCATGACAAGAAACCTAAACCTTTGGATCCAAGAAAC 420
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 GTATGTTGTTTTCCAGATATCTTGCATGACAAGAAACCTAAACCTCTGGATCCAAGAAAC 420
Query 421 ATATATCAGACGCTTAAGATCAACCGGCATCACGACCGGACGTTCTTTGGGAAATCAGTG 480
|||||||||||| |||||||||||||||||||||||||||| |||| || ||||| |||
Sbjct 421 ATATATCAGACGGTTAAGATCAACCGGCATCACGACCGGACATTCTATGCAAAATCTGTG 480
Query 481 GCACCAGATGGTACACCGCCTTCATTTCTCAAGAAGAAAGGATGGGAGCTGCGAACCTCG 540
|| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 481 GCGCCAGACGGTACACCGCCAACATTTCTCAAGAAGAAAGGATGGGAGCTACGAACCTCG 540
Query 541 AGGAGCCTACATCCGAGGAGACCTAGAGAAGCTCTAGGCCTAGACGATGAGCTAAGAGCC 600
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 541 AGGAGCCTACATCCGAGGAGACCTAGAGAAGCTCTTGGCCTAGACGAGGAACTAAGAGCT 600
Query 601 CGTCTCCCTGCATTCGGATTCCCAGTCTCTACAATTCGGTCAGGGAGCGTGATAGTAGGA 660
|||||||| ||||| ||||| ||||| ||||||||||||||||| || |||||||| |||
Sbjct 601 CGTCTCCCAGCATTTGGATTTCCAGTTTCTACAATTCGGTCAGGAAGTGTGATAGTTGGA 660
Query 661 GAATGGTATTGCCCGTTTATGTTTGTGAAGGAGAATTGTAGTTTAAGTTACCAAATGAGG 720
|||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 661 GAATGGTATTGCCCTTTTATGTTTGTGAAGGAGAATTGTAGTGTAAGTCAACAAATGAGG 720
Query 721 AAGTCAATGTTCTATAGGATCACACTATCCCAATACTGGGAACGGATCTATCATTGTGAA 780
||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 721 AAGTCAATGTTCTATAGGATCACACTATCCCAATACTGGGAAC-G----A--ATT-T--- 769
Query 781 AACAATGACGCCAACAACGATCTCGACGAAAACAATGATGACAACGAAGAAGAAG-TGCT 839
| || || || ||||| ||||| || |||||||||||||| ||||||||||||| || |
Sbjct 770 ACCATTG-CGGAAACAATGATCTTGATGAAAACAATGATGAAAACGAAGAAGAAGTTG-T 827
Query 840 GAGAGTAGAGGCGAACGTCGTGAGAGAGGCCAACTATGTGAAGGGTATGGAGGCAGTTAA 899
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 GAGAGTAGAGGCTAACGTCGTGAGAGAGGCCAACTATGTGAAGGGTATGGAGGCGGTTAA 887
Query 900 GGGGGAGAAAGAAGGGCATGGAGGATTTCATTGGTATAGGCAAGTTCAAGGTCCACGGGG 959
||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 888 GGGAGAGAAAGAAGGGCATGGAGGGTTTTATTGGTATAGGCAGGTTCAAGGTCCACGGGG 947
Query 960 ACCGGGGGAGAGGAGGAGGAAAAGGGGTGTAAGTTCTCCGGTGGGGCTGAGTTTTGTGGT 1019
||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||
Sbjct 948 ACCGGGGGAGAGGAGGAGGAAGACGGGTTTAAGGTCTCCGGTGGGGCTGAGTTTTGTGGT 1007
Query 1020 GGTAGAaaggatgagaagagtaatggaggaaggagggt-gg-gtg-ggtgg-agg-aa-- 1072
|||||||||||||||||| ||||||||||||||||||| || | | || || ||| ||
Sbjct 1008 GGTAGAAAGGATGAGAAGGGTAATGGAGGAAGGAGGGTGGGTGGGAGGAGGAAGGAAAGT 1067
Query 1073 -g-gaaggtggtgagag-tg----ga-gagag-aTG-A-ACCA-AT--TAGG---AT--- 1112
| || ||||| ||||| || | || | || | | | || |||| ||
Sbjct 1068 GGTGAGGGTGGAGAGAGATGAACCAATCAGGGTTTGTAGAAGAGATGGTAGGAATATGAA 1127
Query 1113 T--T--CTA-GA-AGAGATTGGAGGAGATTTGGGTGTTATGTGTTGGTGGAGAGTTTTGG 1166
| | | | || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGGTAACAATGATAGAAATTGGAGGAGATTTGGGTGTTATGTGTTGGTGGAGAGTTTTGG 1187
Query 1167 GCTGAGAAGAGCAGATGGAGTTTTGTTGGTTAAATGTGTATTTAGACATACTAATAGACT 1226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1188 GCTGAGAAGAGCAGATGGAGTTTTGTTGGTTAAATGTGTATTTAGACATACTAATAGA-T 1246
Query 1227 T-AGATGTAACTGGGAGT 1243
| ||||||||||||||||
Sbjct 1247 TGAGATGTAACTGGGAGT 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5