BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475168
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61590.1 | Symbols: | Protein kinase superfamily protein | ... 2060 0.0
> AT1G61590.1 | Symbols: | Protein kinase superfamily protein
| chr1:22723501-22726074 REVERSE LENGTH=1517
Length=1517
Score = 2060 bits (1115), Expect = 0.0
Identities = 1256/1325 (95%), Gaps = 6/1325 (0%)
Strand=Plus/Plus
Query 1 AAAAACATTTAGTTAAATCCAATGAGAGACTCTTCAACAACTGCATCCACCAAATCCTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 AAAAACATTTAGTTAAATCCAATGAGAGACTCTTCAACAACTGCATCCACCAAATCCTCA 91
Query 61 CCGTTATGGAAACCCTTTGCCTCAAACTGTTGTTCCGTTGACGACCAAACCATCTTTGGC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 92 CCGTTATGGAAACCCTTTGCCTCAAACTGTTGTTCCGTTGATGACCAAACCGTCTTTGGC 151
Query 121 AATTTCAGCCGTTGCCGACCTTCGAGATCAGAATTCTCCAAGAACCATCTCGGACCACTT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 AATCTCAGCCGTTGCCGACCTTCGAGATCAGAATTCTCCAAGAACCATCTCGGACCACTT 211
Query 181 CCTTCTTTCCGCCGGCTCT-CTTTCACTGATCTAAGCCGGTCTTCGTCGGCTAGGATCAA 239
|||||||| || || |||| |||| ||||||||||||| ||||| ||||||||||||||
Sbjct 212 CCTTCTTTTCGGCGACTCTCCTTT-GCTGATCTAAGCCGTTCTTCTTCGGCTAGGATCAA 270
Query 240 CGAAGATCTGGCACAGACTCTCGGAGCTGATTTAGTGGATTTTCAGATGTGTGAACTGAA 299
|||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 271 TGAAGATCTTGCACAGACTCTTGGAGCCGACTTAGTGGATTTTCAGATGTGTGAACTCAA 330
Query 300 GATGATCACTCAGAGTTTCTCCGGGAACTATCTTCTAGGAGAAGGTGGGTTTGGTAAAGT 359
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 331 GATGATCACTCAGAGTTTCTCCGGGAACTATCTTCTCGGAGAAGGTGGGTTCGGTAAAGT 390
Query 360 GTATAAAGGTTATGTTCATGAGAATCTCCGACAAAGCCTCAAGGCTCAGCCTGTTGCTGT 419
|||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||
Sbjct 391 GTATAAAGGTTATGTTGATGATTATCTCCGACAAAGTCTCAAGGCTCAGCCTGTTGCTGT 450
Query 420 CAAGTTATTGGACATTGAAGGGCTTCAAGGACATCGTGAATGGCTTTCTGAGGTCATACT 479
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 451 CAAGCTATTGGACATTGAGGGGCTTCAAGGACATCGTGAATGGCTTTCTGAGGTCATATT 510
Query 480 TCTTGGACAATTAAAGCACCCGAATTTAGTCAAACTTATTGGCTACTGCTGCGAAGAAGA 539
||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 511 TCTTGGACAGCTAAAACACCCGAATTTAGTCAAACTTATTGGTTACTGCTGCGAAGAAGA 570
Query 540 GGAACGAGTACTCATCTACGAGTTTATGTCACGTGGTAGCCTAGAAAATCACCTCTTCAG 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 571 GGAACGAGTACTCATCTACGAGTTTATGCCACGTGGTAGCCTAGAAAATCACCTCTTCAG 630
Query 600 ACGGATATCACTATCGTTGCCGTGGGCGACGCGGCTGAAGATCGCGGTCGCAGCTGCTAA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 631 ACGGATATCACTATCGTTGCCGTGGGCGACGCGGCTGAAGATAGCGGTCGCAGCTGCTAA 690
Query 660 GGGTTTGGCGTTTTTGCATGATTTGGAGAGTCCAATCATTTACCGTGATTTCAAAACTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GGGTTTGGCGTTTTTGCATGATTTGGAGAGTCCAATCATTTACCGTGATTTCAAAACTTC 750
Query 720 TAATATACTACTTGATTCGGATTTTACTGCAAAACTCTCAGATTTTGGTTTGGCAACAAT 779
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 751 TAATATACTACTTGATTCGGATTTTACTGCAAAACTCTCAGATTTTGGGTTGGCAAAAAT 810
Query 780 GGGGCCAGAAGGATCCAAATCTCATGTCACAACTCGAGTCATGGGTACTTATGGTTATGC 839
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 811 GGGACCAGAAGGATCCAAATCTCATGTCACAACTCGAGTCATGGGCACTTATGGTTATGC 870
Query 840 TGCTCCTGAATATGTTTCAACAGGGCATTTAACGACAAAGAGTGACGTGTATAGTTATGG 899
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 871 TGCTCCTGAATATGTTTCAACAGGGCATTTAACAACAAAGAGTGACGTGTATAGTTATGG 930
Query 900 CGTCGTTTTACTCGAGCTCCTAACGGGAAGAAGAGCCACAGAAAAGGCACGACCAAAAAA 959
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 931 CGTCGTTTTACTCGAGCTCCTAACGGGAAGAAGAGCCACAGAAAAGTCACGGCCAAAAAA 990
Query 960 CCAGCAGAACATCATCGACTGGTCAAAGCCTTACCTAACGAGCAGCCGCCGTCTCCGATG 1019
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 991 CCAGCAGAACATCATCGACTGGTCAAAGCCTTATCTAACAAGCAGCCGCCGACTCCGATG 1050
Query 1020 TGTTATGGACCCAAGACTCGCCGGGCAATACTCAGTCAAGGCGGCTAAAGATACAGCTCT 1079
|||||||||||| || ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1051 TGTTATGGACCCGAGGCTCGCTGGACAATACTCCGTCAAGGCGGCTAAAGATACAGCTCT 1110
Query 1080 TCTCGCATTACAATGTGTGAGCCCTAACCCTAAAGACCGGCCCAAGATGCTTGCCGTAGT 1139
||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1111 TCTAGCCTTACAATGTGTGAGCCCAAACCCTAAAGACCGGCCCAAAATGCTTGCCGTTGT 1170
Query 1140 GGAAGTTCTAGAGAGTCTCATGCATCATAAGGACATGGCGGTTTCTTCGGGTCACTGGCC 1199
||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||
Sbjct 1171 GGAAGCTCTAGAGAGTCTCATACATTATAAGGACATGGCGGTTTCTTCTGGTCATTGGCC 1230
Query 1200 ACTTTCTCCTAAATCTCAAGGCGGAAAGGTTTCGGCGAAGGTTCGAGGGGATAATCGGAG 1259
||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1231 ACTGTCTCCTAAATCTCAGGGCGGGAAGGTTTCCCCGAAGGTTCGAGGGGATCATCGGAG 1290
Query 1260 TGGTAGGAAATCAGCTCCGGGTTCGTTAAGATCGTGAACTAAATAGGGTTGAATGAACTT 1319
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1291 TGGTAGAAAATCAGCTCCGGGTTCGTTAAGATCGTGAACT---TAGGGTTGAATGACCTT 1347
Query 1320 AATAA 1324
| |||
Sbjct 1348 A-TAA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5