BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475169
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:2272... 1788 0.0
> AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720692-22723152
REVERSE LENGTH=1354
Length=1354
Score = 1788 bits (968), Expect = 0.0
Identities = 1146/1232 (93%), Gaps = 11/1232 (1%)
Strand=Plus/Plus
Query 1 TTAAAGAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TTAAAGAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCC 93
Query 61 AAGGAAAAGAGCTAACCGACACCGTGGTAAAGTGAAGGCGTTCCCTAAGGATGATCCAAC 120
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 94 AAGGAAAAGAGCTAGCCGACACCGTGGGAAAGTGAAGGCCTTCCCTAAGGATGATCCAAC 153
Query 121 TAAGCCTTGCAGACTCACATCCTTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAG 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TAAGCCTTGCAGACTCACCTCCTTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAG 213
Query 181 AGAAGTTGAAAAACCTGGATCAAAGCTCCACAAGAAGGAAACATGTGAAGCTGTGACTAT 240
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 214 AGATGTTGAAAAACCTGGATCAAAACTACACAAGAAGGAAACATGTGAAGCTGTGACGAT 273
Query 241 AATTGAGACACCTCCAATGGTGGTTGTTGGTGTGGTTGGGTATGTGAAGACACCTCGTGG 300
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 274 CATTGAGACACCTCCAATGGTGGTTGTTGGTGTGGTTGGTTATGTAAAGACACCTCGTGG 333
Query 301 TCTGCGTTCTCTAAGCACTGTGTGGGCTCAGCATCTGAGTGAAGAAGTGAGGAGGAGGTT 360
|||||| |||||| ||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 334 TCTGCGGTCTCTATGCACTGTGTGGGCTCAGCATCTGAGCGAAGAATTGAGAAGGAGGTT 393
Query 361 TTACAAGAACTGGGCCAAGTCAAAGAAGAAGGCTTTCACTAAATACTCGAAGAAACATGA 420
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 394 CTACAAGAACTGGGCCAAGTCAAAGAAGAAGGCTTTCACTAGATATTCTAAGAAACATGA 453
Query 421 AACTGATGAAGGTAAAAAAGACATTCAAAGTCAATTGGAGAAGATGAAAAAGTACTGCAC 480
|||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 454 AACTGAAGAAGGGAAAAAAGATATTCAAAGTCAATTGGAGAAGATGAAGAAGTACTGCTC 513
Query 481 TGTCATCAGAGTTCTTGCTCACACTCAGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TGTCATCAGAGTTCTTGCTCACACTCAGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAA 573
Query 541 GGCACATCTGAATGAGATTCAGATCAATGGTGGAGATATAGCAAAGAAGGTTGACTTTGC 600
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 574 GGCACATCTGAATGAGATTCAGATCAATGGTGGAGATATAGCAAAGAAAGTTGACTATGC 633
Query 601 CTGCAGTTTGTTCGAGAAGCAAGTTCCTGTAGATGCCATTTTCCAGAAAGATGAAATGAT 660
||||||||| || || || ||||| || || |||||||| ||||||||||||||||||||
Sbjct 634 CTGCAGTTTATTTGAAAAACAAGTCCCAGTTGATGCCATCTTCCAGAAAGATGAAATGAT 693
Query 661 CGATATCATTGGTGTCACCAAAGGAAAAGGGTATGAAGGTGTGGTAACAAGATGGGGTGT 720
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 694 TGATATCATTGGTGTCACCAAAGGAAAAGGTTATGAAGGTGTGGTTACAAGATGGGGAGT 753
Query 721 GACCCGTCTTCCAAGGAAGACTCATCGAGGACTCCGAAAGGTGGCCTGTATTGGTGCCTG 780
|||||| |||||||| ||||||||||| || || || ||||| || ||||| ||||| ||
Sbjct 754 GACCCGACTTCCAAGAAAGACTCATCGTGGTCTTCGCAAGGTTGCTTGTATCGGTGCTTG 813
Query 781 GCATCCAGCTCGAGTCTCCTACACAGTGGCTAGAGCTGGGCAAAATGGGTACCACCACCG 840
|||||||||| ||||||||||||| |||||||||||||| ||||| || ||||| |||||
Sbjct 814 GCATCCAGCTAGAGTCTCCTACACGGTGGCTAGAGCTGGACAAAACGGTTACCATCACCG 873
Query 841 TACTGAGATGAACAAGAAGATTTACCGGGTTGGGAAAGTTGGCCAAGAGACTCACTTGGC 900
|||||| |||||||||||| | ||||||||||||||||||||||| |||||||||| ||
Sbjct 874 TACTGAAATGAACAAGAAGGTATACCGGGTTGGGAAAGTTGGCCAGGAGACTCACTCAGC 933
Query 901 CATGACTGAGTACGACAGAACCGAGAAGGATATCACACCAATGGGAGGATTTCCACACTA 960
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 934 CATGACCGAGTATGACAGAACCGAGAAGGATATCACACCAATGGGAGGATTTCCCCACTA 993
Query 961 TGGGGTAGTGAAGGAAGATTATTTGATGATCAAGGGAGGTTGCGTGGGGCCTAAGAAACG 1020
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 994 TGGGATAGTGAAGGAAGATTATTTGATGATCAAGGGATGTTGCGTGGGGCCTAAGAAACG 1053
Query 1021 TGTGGTGACTTTAAGACAGACTTTG-TTGAAGCAGACGTCTAGGGTTGCTACGGAGGAGA 1079
||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||
Sbjct 1054 TGTGGTGACTTTAAGACAGACTTTGCTT-AAGCAGACGTCTAGGCTTGCTATGGAGGAGA 1112
Query 1080 TCAATCTTAAGTTCATTGACA-TGTCTTCCAAATTTGGG-CACGGTCGTTTCCAGACTTC 1137
|||| ||||||||||||||| || ||||||| | ||| ||||||||||||||||||||
Sbjct 1113 TCAAGCTTAAGTTCATTGACGCTG-CTTCCAA-TGGGGGACACGGTCGTTTCCAGACTTC 1170
Query 1138 TCAAGAGAAGGCCAAGTTCTATAATA-AAGCCATCAAAGCTTAGATTTCTAAGTATTT-G 1195
|||||||||||||||||||||| || || |||||||||||||||||||||||||||| |
Sbjct 1171 TCAAGAGAAGGCCAAGTTCTATGGTAGAA-CCATCAAAGCTTAGATTTCTAAGTATTTTG 1229
Query 1196 TTGTTTTTCT-AGTTTCTTTCTTTGTTGTTTG 1226
|||||||| | |||||||||||||| ||||||
Sbjct 1230 TTGTTTTT-TGAGTTTCTTTCTTTGGTGTTTG 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60240654000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5