BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475189
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61340.2 | Symbols: | F-box family protein | chr1:22628265-... 678 0.0
> AT1G61340.2 | Symbols: | F-box family protein | chr1:22628265-22630006
FORWARD LENGTH=1103
Length=1103
Score = 678 bits (367), Expect = 0.0
Identities = 503/562 (90%), Gaps = 36/562 (6%)
Strand=Plus/Plus
Query 390 GTGAGGATTATCTGTGGGGTCGAGCATGAAGATTTGAAACAATTGTTTCATGTTTCAAAG 449
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 548 GTGAGGATTATCTGTGGGGTCGAGCATGAAGACTTGAAACAATTGTTTCATGTTTCAAAG 607
Query 450 ACAATAAGAGAAGCTACATTGATCGCAAAGCAGTCACATTTCGCGTATAATACACCTCGG 509
|||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 608 ACAATAAGAGAAGCTACAATGATAGCAAAGCAGTCACATTTCGCGTATAGTACACCTCGG 667
Query 510 AAAGCCTCGGTTTTCCACCATGGCAGATTTGGTTGGGATAAACCGTTCGATGTAGAGGAT 569
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 668 AAAACCTCGGTTTTCCACCATGGCAGATTTGGTTGGGATAAACCGTTTGATGTAGAGGAT 727
Query 570 GATGGTGAAGAGATTGAAGCTCCAGGTGCTCCATTGCAGAAAAGGTACCGCCTTTCGAGA 629
|||| |||||||||||||||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 728 GATGATGAAGAGATTGAAGCTCCGGGAGCTCCGTTGCAGAAAAGGTACCGTCTTTCGAGG 787
Query 630 ATAAACCGCAACAAGGACGACGATTCTGGAGTCTCAGTGGCTCTGTTCAACTGAATCAAA 689
|||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||
Sbjct 788 ATAAACCGCAACAAGGACGA---TTCCGGAGTCTCAGTGGCTCTATTCCACTGAATCAAA 844
Query 690 CAACTTGGTTTCTTCAAGATTCTTAATTGAAGATGAGGG-ttttt--tt-tGGTTT---- 741
||||||||||||||||||||||||||||||||| ||||| ||||| || || |||
Sbjct 845 CAACTTGGTTTCTTCAAGATTCTTAATTGAAGAGGAGGGGTTTTTAGTTATGTTTTTTTT 904
Query 742 -GGGTT---------A-AG-TCTCTGTAAATTGTTGTTAGATACAAAAAGAAAGATAGGG 789
||||| | || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 905 TGGGTTTTGGTTTGGATAGGTCTCTGTAAATTGTTGTTAGATACAAAAAGAGAGATAGGG 964
Query 790 TTTTGGAAAGGCTAGCTTGTTTAGAAG---A-AA-CT--CT-T-TGGGAGGGTTCTAAAT 840
|||||||||||||||||| |||||||| | || | || | |||||||||| || ||
Sbjct 965 TTTTGGAAAGGCTAGCTTCTTTAGAAGGTCACAAACAAACTCTATGGGAGGGTTATAGAT 1024
Query 841 CTTTTTGTATGTTGTGTAGTGTGAATATAGTTTATTTAGTTTTTACAAAGTG-ATTAATA 899
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1025 CTTTTTGTATGTTGTGTAGTGTGAATATAGTTTATTTGGTTTTTACAAAGTGGATTAATA 1084
Query 900 ATAATAAGAGATGCATATTTAT 921
|||| |||||||||||||||
Sbjct 1085 ATAA---GAGATGCATATTTAT 1103
Score = 545 bits (295), Expect = 2e-154
Identities = 370/404 (92%), Gaps = 14/404 (3%)
Strand=Plus/Plus
Query 1 ACCaaaaaagaaaaaTTACTCA-TTTT-TCTCAGCTTTTGTTCATTTCCCGCAAAC--AT 56
|||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||
Sbjct 15 ACCAAAAAAGAAAAATTACTCATTTTTCTCTCAGCTTTTGTTCATTTCCCACAAACATAT 74
Query 57 AC-TTGAAGAAT-ACATAAACAAATCTCTG-AAATCTTTTGGGAAAATCTCATTAATTTA 113
|| || |||| | |||| |||||||||| | ||||| || || ||||||| ||| |||||
Sbjct 75 ACTTTCAAGACTCACATCAACAAATCTCGGAAAATC-TTCGGAAAAATCTTATTTATTTA 133
Query 114 TTGATAAAAATGGCATTGGGGAAGAAGAGAATCGTTACCCAGAAGTCGAATTTGAGGCAA 173
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 134 TTGATAAAAATGGCATTGGGGAAGAAAAGAATCGTTACCCAGAAGCCGAATTTGAGGCAA 193
Query 174 CGTCGTGATGTGGATGATGGAGGATTAGGGTTAGGGTTAGAGTTTGTACAGTACAAGAGA 233
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CGTCGTGATGTGGATAATGGAGGATTAGGGTTAGGGTTAGAGTTTGTACAGTACAAGAGA 253
Query 234 GGATTTGGGAGAAAGAGGATTCTCATTTCATCAGGTGATGAGATTGAGGAGGATTCGATT 293
|||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||
Sbjct 254 GGATTTGGGAGAAAGAGGATTCTCATTTCATCTGGTGATGAGAT-G-G-AGGATTCGATT 310
Query 294 TTCGCTTCACCTGTTGGAAAAAAGCTCTGCGAT-A-AGA-CTACTTCGGTTGCTGATGGT 350
||| ||||||||||||||||||||||||||||| | | | ||||||||||||| || |||
Sbjct 311 TTCACTTCACCTGTTGGAAAAAAGCTCTGCGATGACAAAACTACTTCGGTTGCAGAGGGT 370
Query 351 CAAAGTCGAGAGCTTGAAGATCTTCCGCTAGATATTCTGGTGAG 394
|| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 371 CAGAGTCGAGAGCTTGAAGATCTTCCCCTAGATATTCTGCTGAG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5