BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475192
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61270.1 | Symbols: | Transmembrane amino acid transporter ... 1965 0.0
AT3G01760.1 | Symbols: | Transmembrane amino acid transporter ... 1334 0.0
> AT1G61270.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:22599665-22602140 REVERSE LENGTH=1356
Length=1356
Score = 1965 bits (1064), Expect = 0.0
Identities = 1260/1353 (93%), Gaps = 20/1353 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGGAAAT-CCAAGTTCACCAAACCAAATCCTAAACCAAGATCTTGTGGAGGATCA 59
|||| ||| ||| |||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 1 ATGAAAGG-AATCCCAAGTTCGTCAAACCAGATCCTAAACCAAGATCTTGTTGAGGATCA 59
Query 60 ATCATTTGAGCTGGAAGATTGGCTTCCAATCACCGCATCACGAAATGCCAATTGGTACTA 119
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 60 ATCATTTGAGCTGGAAGATTGGCTTCCAATTACAGCATCACGAAATGCTAATTGGTACTA 119
Query 120 TTCGGCTTTCCACAACGTCACTGCCATAGTTGGTGCTGGAGTTCTTGGTCTTCCTTACGC 179
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTCAGCTTTCCACAACGTCACTGCCATAGTTGGTGCTGGAGTTCTTGGTCTCCCTTACGC 179
Query 180 CATGTCAGAACTTGGATGGGGACCTGGAGTTGTGGTGTTGATCCTGTCATGGGTCATAAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATGTCAGAACTTGGATGGGGACCTGGAGTTGTGGTGTTGATCCTGTCATGGGTCATAAC 239
Query 240 GTTGTACACATTCTGGCAAATGATTGAGATGCACGAAATGTTTAAAGGGAAACGGTTTGA 299
||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GTTATACACGTTCTGGCAAATGATTGAGATGCACGAAATGTTTGAAGGGAAACGGTTTGA 299
Query 300 TAGGTACCATGAGCTGGGCCAAGCAGCCTTTGGCGAAAAGCTTGGTTTGTACATCATAGT 359
||||||||| ||||| || ||||||||||||||| |||||||||||||||||||| | ||
Sbjct 300 TAGGTACCACGAGCTAGGACAAGCAGCCTTTGGCAAAAAGCTTGGTTTGTACATCGTCGT 359
Query 360 GCCGCTACAACTTCTTGTTGAAATC-AGTGCTTGCATAGTCTATATGGTGACAGGAGGTG 418
|||||| |||||||||||||| | | |||||||||||||| |||||||||||||||||||
Sbjct 360 GCCGCTTCAACTTCTTGTTGAGA-CAAGTGCTTGCATAGTGTATATGGTGACAGGAGGTG 418
Query 419 AATCGTTGAAAAATATTCATCGAA-TTTCTGTGGGAGAAC-ACGAGTGCAGAAAGTTGAA 476
|||| ||||||| ||||||| || |||||||||||| || ||||||| |||||||||||
Sbjct 419 AATCACTGAAAAAGATTCATC-AACTTTCTGTGGGAG-ACTACGAGTGTAGAAAGTTGAA 476
Query 477 AG-TCGTACACTTCATTTTGATCTTTGCCTCTTCACAACTTGTGCTTTCTCTTC-TAGAA 534
|| ||| |||||||||||||||||||||||||||||| |||||||||| |||| || ||
Sbjct 477 AGTTCG-ACACTTCATTTTGATCTTTGCCTCTTCACAGTTTGTGCTTTCCCTTCTTA-AA 534
Query 535 AATTTCAACTCCATTTCTGGTGTCTCTTTGGTAGCTGCCGTCATGTCTATGAGCTATTCC 594
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AATTTCAACTCCATTTCCGGTGTCTCTTTGGTAGCTGCCGTCATGTCTATGAGCTATTCC 594
Query 595 ACAATTGCTTGGATAGCTTCACTGACAAAGGGTGTCGTGGAGAATGTAGAATACGGATAT 654
|||||||||||| |||||||||||||||||||||||| | | ||||| ||||| ||||||
Sbjct 595 ACAATTGCTTGGGTAGCTTCACTGACAAAGGGTGTCGCGAACAATGTTGAATATGGATAT 654
Query 655 AAAAAGAA-AAACAATACCTCAGTGCAATTAGGCTTCTTAGGTGCATTGGGGGAGATGGC 713
||||||| |||||| |||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 655 -AAAAGAAGAAACAACACCTCAGTGCCATTAGCCTTCTTAGGCGCATTGGGGGAGATGGC 713
Query 714 TTTTGCATATGCAGGTCACAACGTTGTTTTAGAAATTCAAGCAACGATTCCATCAACGCC 773
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 714 TTTTGCGTATGCAGGTCACAATGTTGTTTTAGAAATTCAAGCAACGATTCCATCAACACC 773
Query 774 AGAAAATCCATCAAAACGACCCATGTGGAAGGGAGCCATCGTAGCCTACATTATTGTAGC 833
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 774 AGAAAATCCATCAAAACGACCCATGTGGAAGGGAGCCATTGTAGCCTATATTATTGTAGC 833
Query 834 TTTCTGTTACTTCCCTGTGGCTCTTGTAGGGTTTTGGATATTTGGAAACAACGTTGCAGA 893
||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||
Sbjct 834 TTTCTGTTACTTCCCTGTGGCCCTTGTAGGGTTTTGGACATTCGGAAACAACGTTGAAGA 893
Query 894 CAACATTCTCAAATCGCTCCGGGATCCC-ACCGGACTTATGATTGTGGCCAACATGTTTG 952
|||||||||||| | ||||||| ||| | |||||||| |||||||||||||| ||||
Sbjct 894 AAACATTCTCAAAACACTCCGGG-GCCCGAAGGGACTTATAATTGTGGCCAACATTTTTG 952
Query 953 TGGTTATACATCTCATGGGAAGCTACCAGGTGTACGCAATGCCCGTGTTTGATATGATCG 1012
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 953 TGATTATACATCTCATGGGAAGCTACCAGGTGTACGCAATGCCCGTGTTTGACATGATCG 1012
Query 1013 AATCTGTAATGATAAAGAAATGGCACTTCAATCCAACAAGAGTTCTACGGTATACCATCC 1072
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1013 AATCTGTAATGATAAAGAAATGGCACTTCAGTCCAACAAGAGTTCTACGGTTTACCATCC 1072
Query 1073 GCTGGACTTTTGTGGCCGCCACGATGGGGATAGCAGTCGCTCTACCATATTTCAGTGCTT 1132
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1073 GTTGGACTTTTGTGGCCGCCACGATGGGGATAGCAGTCGCTCTACCGCATTTCAGTGCTT 1132
Query 1133 TGCTGTCATTTTTTGGAGGATTCGTATTTGCCCCGACCACATACTTTATCCCTTGCATCA 1192
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1133 TGCTGTCATTTTTTGGAGGATTCATATTTGCCCCGACCACATACTTTATCCCTTGCATCA 1192
Query 1193 TATGGTTGATATTGAAAAAACCAAAGAGATTTGGTCTGTCATGGTGTATCAATTGGATTT 1252
||||| |||| |||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1193 TATGGCTGATCCTGAAGAAACCAAAGAGATTTAGTCTATCATGGTGTATCAATTGGATTT 1252
Query 1253 GCATCATTCTTGGGGTTCTAGTGATGATTATAGCACCTATTGGGGGACTCGCCAAACTAA 1312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1253 GCATCATTCTTGGGGTTCTAGTGATGATTATAGCACCTATTGGGGGACTCGCCAAATTAA 1312
Query 1313 T-ACATACTTTAAAG-AATCCCGACTCCAGTTG 1343
| | || |||||||| || ||||||||||||||
Sbjct 1313 TGA-ATGCTTTAAAGCAA-CCCGACTCCAGTTG 1343
> AT3G01760.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:273299-275270 FORWARD LENGTH=1368
Length=1368
Score = 1334 bits (722), Expect = 0.0
Identities = 1117/1305 (86%), Gaps = 38/1305 (3%)
Strand=Plus/Plus
Query 31 ATCCTAA-ACCAAGATCTTGT---GGAGGATCAATCATTTGAGCTGGAAGATTGGCTTCC 86
|||| || ||||| ||||||| |||||||||| | ||||| |||||||||||||||||
Sbjct 22 ATCC-AAGACCAACATCTTGTGGAGGAGGATCAACCCTTTGATCTGGAAGATTGGCTTCC 80
Query 87 AATCACCGCATCACGAAATGCCAATTGGTACTATTCGGCTTTCCACAACGTCACTGCCAT 146
|||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 81 AATCACAGCATCAAGGAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCAT 140
Query 147 AGTTGGTGCTGGAGTTCTTGGTCTTCCTTACGCCATGTCAGAACTTGGATGGGGACCTGG 206
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 141 TGTTGGTGCTGGCGTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGG 200
Query 207 AGTTGTGGTGTTGATCCTGTCATGGGTCATAACGTTGTACACATTCTGGCAAATGATTGA 266
|||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 201 GGTTGTGGTGTTGATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGA 260
Query 267 GATGCACGAAATGTTTAAAGGGAAACGGTTTGATAGGTACCATGAGCTGGGCCAAGCAGC 326
|||||| || |||||| ||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 261 GATGCATGAGATGTTTGAAGGGCAACGGTTCGATAGGTACCATGAGCTGGGTCAGGCAGC 320
Query 327 CTTTGGCGAAAAGCTTGGTTTGTACATCATAGTGCCGCTACAACTTCTTGTTGAAATCAG 386
|||||| |||||||||||||||||||||| ||||| |||||||| ||||| || |||||
Sbjct 321 CTTTGGTAAAAAGCTTGGTTTGTACATCATCGTGCCCCTACAACTACTTGTCGAGATCAG 380
Query 387 TGCT-TGCATAGTCTATATGGTGACAGGAGGTGAATCGTTGAAAAATATTCATCGA-ATT 444
|| | ||||||||||||||||| || |||||| |||| |||| ||| | ||| || ||
Sbjct 381 TG-TGTGCATAGTCTATATGGTCACTGGAGGTAAATCCCTGAAGAATGTACAT-GACCTT 438
Query 445 TCTGTGGGAGA---ACACGAGTGCAGAAAG-TTGA-AAGTCGTACACTTCATTTTGATCT 499
|| ||||||| || |||||| |||| || | || || |||||||||||||||||
Sbjct 439 GCTTTGGGAGATGGTGACAAGTGCACAAAGCTT-AGAATTC-AACACTTCATTTTGATCT 496
Query 500 TTGCCTCTTCACAACTT-GTGCTTTCTCTTCTAGAA-AATTTCAACTCCATTTCTGGTGT 557
||||||||||||| || ||||| || ||||| || || ||||||||||||||||||||
Sbjct 497 TTGCCTCTTCACAG-TTCGTGCTCTCCCTTCTT-AAGAACTTCAACTCCATTTCTGGTGT 554
Query 558 CTCTTTGGTAGCTGCCGTCATGTCTATGAGCTATTCCACAATTGCTTGGATAGCTTCACT 617
||| ||||||||||| ||||||||| | |||||||| |||||||||||| |||| || ||
Sbjct 555 CTCCTTGGTAGCTGCTGTCATGTCTGTCAGCTATTCTACAATTGCTTGGGTAGCCTCGCT 614
Query 618 GACAAAGGGTGTCGT----GGAGAATGTAGAATACGGATATAAAAAGAAAAACAATACCT 673
|| ||||||| | || || |||||| ||||| |||| ||| || ||||| |||
Sbjct 615 GAGGAAGGGTGCCACCACCGG-GAGTGTAGAGTACGGCTATAGAAA-AAGAACAA--CCT 670
Query 674 CAGTGCAATTAGGCTTCTTAGGTGCATTGGGGGAGATGGCTTTTGCATATGCAGGTCACA 733
|||||| ||||| ||||||| ||||| |||| || ||||||||||| || |||||||| |
Sbjct 671 CAGTGCCATTAGCCTTCTTAAGTGCACTGGGTGAAATGGCTTTTGCGTACGCAGGTCATA 730
Query 734 ACGTTGTTTTAGAAATTCAAGCAACGATTCCATCAACGCCAGAAAATCCATCAAAACGAC 793
|||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||
Sbjct 731 ACGTTGTTTTGGAAATTCAAGCAACGATCCCATCAACACCAGAGAACCCATCAAAACGAC 790
Query 794 CCATGTGGAAGGGAGCCATCGTAGCCTACATTATTGTAGCTTTCTGTTACTTCCCTGTGG 853
|||||||||||||||| | |||||||| || |||||||||||||| |||||||||||||
Sbjct 791 CCATGTGGAAGGGAGCGGTTGTAGCCTATATCATTGTAGCTTTCTGCTACTTCCCTGTGG 850
Query 854 CTCTTGTAGGGTTTTG-GATATTTGGAAACAACGTTGCAGACAACATTCTCAAATCGCTC 912
| |||||||| ||| || |||||||||| |||| ||| | ||| ||| |||| ||
Sbjct 851 CACTTGTAGG-TTTCAAGACCTTTGGAAACAGTGTTGAAGAGAGCATCCTCGAATCACTA 909
Query 913 -CGGGATCCCACCGG-ACTTATGATTGTGGCCAACATGTTTGTGGTTATACATCTCATGG 970
| | || || || |||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct 910 ACAAAA-CCAAC-GGCACTTGTCATTGTGGCCAACATGTTTGTGGTCATACATCTCTTGG 967
Query 971 GAAGCTACCAGGTGTACGCAATGCCCGTGTTTGATATGATCGAATCTGTAATGATAAAGA 1030
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||
Sbjct 968 GAAGCTACCAGGTGTATGCGATGCCCGTGTTTGACATGATCGAATCTGTAATGATAAGGA 1027
Query 1031 AATGGCACTTCAATCCAACAAGAGTTCTACGGTATACCATCCGCTGGACTTTTGTGGCCG 1090
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1028 TATGGCACTTCAGTCCAACAAGAGTTCTACGGTTTACCATCCGATGGACTTTTGTGGCCG 1087
Query 1091 CCACGATGGGGATAGCAGTCGCTCTACCATATTTCAGTGCTTTGCTGTCATTTTTTGGAG 1150
|||||||||| ||||| |||| | |||| |||| ||| || ||||||||||||||||| |
Sbjct 1088 CCACGATGGGAATAGCGGTCGGTTTACCGTATTACAGCGCATTGCTGTCATTTTTTGGGG 1147
Query 1151 GATTCGTATTTGCCCCGACCACATACTTTATCCCTTGCATCATATGGTTGATATTGAAA- 1209
|||| || || ||||||||||||||||||||||| |||||||| ||| |||| | |||
Sbjct 1148 GATTTGTGTTCGCCCCGACCACATACTTTATCCCATGCATCATGTGGCTGATCCT-AAAG 1206
Query 1210 AAACCAAAGAGATTTGGTCTGTCATGGTGTATCAATTGGATTTGCATCATTCTTGGGGTT 1269
||||||||||||||| |||| ||||||||||| || ||| ||||||||||| ||||| ||
Sbjct 1207 AAACCAAAGAGATTTAGTCTCTCATGGTGTATGAACTGGTTTTGCATCATTTTTGGGCTT 1266
Query 1270 CTAG-TGATGATTATAGCACCTATTGGGGGACTCGCCAAACTAAT 1313
| | ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1267 GT-GCTGATGATCATAGCACCTATTGGGGGACTGGCCAAACTAAT 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5