BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475194 Length=444 Score E Sequences producing significant alignments: (Bits) Value AT1G61255.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 544 4e-154 > AT1G61255.1 | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22589151-22589691 REVERSE LENGTH=541 Length=541 Score = 544 bits (294), Expect = 4e-154 Identities = 400/448 (89%), Gaps = 20/448 (4%) Strand=Plus/Plus Query 1 ATGACTACAAAACTAAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACACTCTTAC 60 ||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| || Sbjct 1 ATGGCTACAAAACTCAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACTCTCTCAC 60 Query 61 TCACGCCCCAG-CCGACCAG-A--ATCATCATCAACCGGATCCTACTCGGATCAGCTCAA 116 ||||| ||| | |||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 61 TCACG-CCCGGCCCGACCCGAATCATCATCATCAACCGGATCCTACTCGGATCAGCTCAA 119 Query 117 GAAAAACTCTAAAGGTAACTTTAACAAGAATGACAAGGGCTATGGACCAGGAGGATACCC 176 |||| |||||||| | | |||| || |||||||||||||| ||||||||||||| Sbjct 120 GAAACACTCTAAA-G--A---TAAC---TATAACAAGGGCTATGGATCAGGAGGATACCC 170 Query 177 TGGCCTTACAACTGAACCGGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGTGGTAG 236 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 171 TGGCCTTACAACCGAACCAGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGCGGTAG 230 Query 237 TTACAGCGAACTAAGCGGCGAAAATAACAAAGGACGTGCGGTGAGACTATCGGTGGTGTG 296 |||||||||||| ||||||| | ||| ||||||||||| |||||||||| ||||| |||| Sbjct 231 TTACAGCGAACTTAGCGGCGGATATAGCAAAGGACGTGGGGTGAGACTAACGGTGATGTG 290 Query 297 TAAAGAGAAAGGTCATTGTTACAAGAAGGAGCTGACTTGTCCGGCGAAGTGTTTCAAGTC 356 | ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| Sbjct 291 TGAAGAGAAAGGTCATTGTTACATGAAGAAGCTGACTTGTCCGGCAAAGTGTTTCAAGTC 350 Query 357 TTTAAGCCGGAACGTCAAAGTATACATTGGTAGTGGTGGAGGTGGTGGTTGCACCATTGA 416 |||||||||||| | ||||| |||| | ||||||| |||||||||||||||||||| Sbjct 351 TTTAAGCCGGAAAGGCAAAGGATAC----G--GTGGTGGTGGTGGTGGTTGCACCATTGA 404 Query 417 TTGTAAGAAGTGTGTGGCTTATTGTTGA 444 |||||||||||||||||||||||||||| Sbjct 405 TTGTAAGAAGTGTGTGGCTTATTGTTGA 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21112454580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5