BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475194
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61255.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 544 4e-154
> AT1G61255.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast
hits to 58 proteins in 12 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:22589151-22589691
REVERSE LENGTH=541
Length=541
Score = 544 bits (294), Expect = 4e-154
Identities = 400/448 (89%), Gaps = 20/448 (4%)
Strand=Plus/Plus
Query 1 ATGACTACAAAACTAAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACACTCTTAC 60
||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 ATGGCTACAAAACTCAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACTCTCTCAC 60
Query 61 TCACGCCCCAG-CCGACCAG-A--ATCATCATCAACCGGATCCTACTCGGATCAGCTCAA 116
||||| ||| | |||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACG-CCCGGCCCGACCCGAATCATCATCATCAACCGGATCCTACTCGGATCAGCTCAA 119
Query 117 GAAAAACTCTAAAGGTAACTTTAACAAGAATGACAAGGGCTATGGACCAGGAGGATACCC 176
|||| |||||||| | | |||| || |||||||||||||| |||||||||||||
Sbjct 120 GAAACACTCTAAA-G--A---TAAC---TATAACAAGGGCTATGGATCAGGAGGATACCC 170
Query 177 TGGCCTTACAACTGAACCGGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGTGGTAG 236
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 171 TGGCCTTACAACCGAACCAGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGCGGTAG 230
Query 237 TTACAGCGAACTAAGCGGCGAAAATAACAAAGGACGTGCGGTGAGACTATCGGTGGTGTG 296
|||||||||||| ||||||| | ||| ||||||||||| |||||||||| ||||| ||||
Sbjct 231 TTACAGCGAACTTAGCGGCGGATATAGCAAAGGACGTGGGGTGAGACTAACGGTGATGTG 290
Query 297 TAAAGAGAAAGGTCATTGTTACAAGAAGGAGCTGACTTGTCCGGCGAAGTGTTTCAAGTC 356
| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 291 TGAAGAGAAAGGTCATTGTTACATGAAGAAGCTGACTTGTCCGGCAAAGTGTTTCAAGTC 350
Query 357 TTTAAGCCGGAACGTCAAAGTATACATTGGTAGTGGTGGAGGTGGTGGTTGCACCATTGA 416
|||||||||||| | ||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 351 TTTAAGCCGGAAAGGCAAAGGATAC----G--GTGGTGGTGGTGGTGGTTGCACCATTGA 404
Query 417 TTGTAAGAAGTGTGTGGCTTATTGTTGA 444
||||||||||||||||||||||||||||
Sbjct 405 TTGTAAGAAGTGTGTGGCTTATTGTTGA 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5