BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475195
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:2258589... 1938 0.0
AT1G11180.2 | Symbols: | Secretory carrier membrane protein (S... 793 0.0
> AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:22585899-22588905
FORWARD LENGTH=1247
Length=1247
Score = 1938 bits (1049), Expect = 0.0
Identities = 1193/1259 (95%), Gaps = 24/1259 (2%)
Strand=Plus/Plus
Query 3 CTTGTCTTCAACGTTCGGCTTAATCCTTGGTCCGTGTTCAAGATCTTAGATCGATTTCTA 62
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 8 CTTGTCTTCAACGTTCGGC-TAATCCTTGGTCCGTGCT-AAGATCTTAGATCGATTTCTA 65
Query 63 AAGTCTTCTTCTCCGTCTTCGTCTGCTGATAACTAGCTTCTTGAATCTTCTGAAGCTTTA 122
|||||||| ||| ||||| ||| |||||||||||||| || |||||||||||||||||
Sbjct 66 AAGTCTTCGTCT---TCTTCTTCTTCTGATAACTAGCTTTTTCAATCTTCTGAAGCTTTA 122
Query 123 A-TTTTTCATAGCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 181
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATTTTTTCATACCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 182
Query 182 TCAATCCTTTCGCTAATCCTAAAGGTGTTCCGCCTGCGTCGAATTCGAGACTTTCGCCTT 241
||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 183 TCAATCCTTTCGCTAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTT 242
Query 242 TACCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTGGACATTCCTCTTGAGAGAC 301
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 243 TGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGAG 302
Query 302 CTGGTGGACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 361
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTGGTACACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 362
Query 362 AACGACGAGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 421
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 363 AACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 422
Query 422 TCGAAGTGAAAAACTGGCCGCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAA 481
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 TTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAA 482
Query 482 TTCCAGTTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTC 541
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 483 TTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTC 542
Query 542 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 602
Query 602 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTAT 661
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 603 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTAT 662
Query 662 GGTATCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 721
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 722
Query 722 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 782
Query 782 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGCGGTCAAG 841
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 783 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAG 842
Query 842 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTA 901
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 843 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTA 902
Query 902 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 962
Query 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGCCGCTGTTTGAGAGGTT-TCGTTGTAA 1020
||||||||||||| || |||||||||||||||||||||||||||||| || || ||||||
Sbjct 963 TGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGCCGCTGTTTGAGAG-TTCTCCTTGTAA 1021
Query 1021 CATTCTGGTTTGTGTATGCAAtctttactgtttctttcttttttctgattttctt-aagt 1079
|||||||||||||||||||| || |||||||| ||| | ||||||||| ||||
Sbjct 1022 CATTCTGGTTTGTGTATGCA--CT-----GTTTCTTT-TTT---CAGATTTTCTTGAAGT 1070
Query 1080 ctctctctctctctctctctccctctctgctctATAAGCACaaaaaaaaTTATTCAATTT 1139
||||||||||||||||||||| |||||||||||||| || |||||||| ||| |||||
Sbjct 1071 CTCTCTCTCTCTCTCTCTCTC--TCTCTGCTCTATAAACAAAAAAAAAAAGATTTAATTT 1128
Query 1140 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1188
Query 1200 ACGTATTTCGAAACCATTCAA-AATTGTTAGTTTTTT-ATAAGAACTCATCTTACATCC 1256
|||||||| |||| |||||| |||| ||| |||||| |||||||||||||||||||||
Sbjct 1189 ACGTATTTTGAAATCATTCATGAATTTTTACTTTTTTTATAAGAACTCATCTTACATCC 1247
> AT1G11180.2 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr1:3745783-3748500 FORWARD LENGTH=1154
Length=1154
Score = 793 bits (429), Expect = 0.0
Identities = 608/694 (88%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 309 ACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAAAACGACG 368
|||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 265 ACAGGATTTGAAAAAGAAAGAGAAGGAGCTCCAAGCCAAAGAAGCTGACCTAAGACGACG 324
Query 369 AGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTATCGAAGT 428
|||||| || || ||||||||| | ||||||||||| ||||| ||||| |||||||| |
Sbjct 325 AGAGCAAGATCTTAAACGAAAACAGGATGCTGCTGCCCGAGCCGGAATTGTTATCGAGGC 384
Query 429 GAAAAACTGGCC-GCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAATTCCAG 487
||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
Sbjct 385 AAAAAACTGGCCTACC-TTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGG 443
Query 488 TTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTCTTTG-T 546
||| ||||||||| ||||||||| || | || ||||| |||||||| ||||||| | |
Sbjct 444 TTCGTCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTC-TCGCA 502
Query 547 CTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGACGATA 606
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 503 CTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGGAGTAACAATT 562
Query 607 TGGCTTCTTGCC-TTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTATGGTA 665
|||||||| ||| ||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 563 TGGCTTCTCGCCGTTA-TTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTA 621
Query 666 TCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTTTCTT 725
|||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 622 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 681
Query 726 GTTCTATATGCTCCACATTGCTTT-CTGCGTCTTTGCTGCAGTTGCTCCACCTGTCGTCT 784
|||||| ||||||||||| |||| |||| ||||||||||||||||||| ||| | ||||
Sbjct 682 GTTCTACATGCTCCACATA-CTTTTCTGCCTCTTTGCTGCAGTTGCTCCTCCTATTGTCT 740
Query 785 TCAAAGGAAAATCTCTTGCTGGG-ATCTTACCTGCAATAGATGTCTTAAGCGGTCAAGCA 843
||||||||||||| ||||| ||| || ||||||||||||||||| || |||| ||| |||
Sbjct 741 TCAAAGGAAAATCACTTGC-GGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCA 799
Query 844 ATTGTT-GGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTAG 902
||| | ||||| ||||||||||||||||||| ||| ||||| || ||||||||||||||
Sbjct 800 -TTGGTCGGGATCTTCTACTTCATTGGGTTTGGGTTATTCTGTCTTGAATCAGTGGTTAG 858
Query 903 CATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAA-CAAGATCAAA 961
|||||||||||| |||||||| || ||||||||| |||| ||||| ||| | ||| | |
Sbjct 859 CATCTGGGTTATACAGCAAGTATACATGTACTTCAGAGGAAGCGGAAAAGCG-GATGATA 917
Query 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGC 995
|||||||||| || |||||||||||| |||||||
Sbjct 918 TGAGACGGGATGCTGCAAGAGGAGCCATGAGAGC 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5