BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475199
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61240.1 | Symbols: | Protein of unknown function (DUF707) ... 2531 0.0
AT1G11170.1 | Symbols: | Protein of unknown function (DUF707) ... 1011 0.0
> AT1G61240.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:22582178-22585203 FORWARD LENGTH=1702
Length=1702
Score = 2531 bits (1370), Expect = 0.0
Identities = 1501/1562 (96%), Gaps = 18/1562 (1%)
Strand=Plus/Plus
Query 228 TTTTTCAAAAAGATACATTCTTGTTGCATGTGCGTAGATCAGCCTTGTATAGAACTGAGA 287
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTCGAAAAGATACATTC---TTGCATGTGCGTAGATCAGCCTTGTATAGAACTGAGA 177
Query 288 TTTTGGTGAAGC-TT-TTGAATTTGGTTTCTTTGTTC--TCTGTTCTTGTGAAGGG---A 340
|||||||||||| || ||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 178 TTTTGGTGAAGCTTTGTTGAA-TTGGTTTCTTTGTTCTTTCTGTTCTTGTGAAGGGAACA 236
Query 341 ACACAAAGACGGTGGCTTTCCTCGGTAAATAGATTATGGAACATGATTTACCGTCTATTA 400
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 237 ACACAAAGACGGTGGCTTTGCTCGGTAAATAGATTATGGAACATGGTTTACCGTCTATTA 296
Query 401 AATCATGGAAGTCACTTGTTAAGAGAAGAAACAATGCTCAAGAAGGGGGTAAATCGTCGT 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 297 AATCATGGAAGTCACTTGTTAAGAGAAGAAACAATGCTCAAGAAGGGGGTAAATCGTCAT 356
Query 461 GGAAAATGAAACCGA-TTGTGGTGCTCATGTGTACAGTACTTTTGATCTTTTGGTATAAG 519
||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 GGAAAATGAAACC-AGTTGTGGTGCTAATGTGTACAGTACTTTTGATCTTTTGGTATAAG 415
Query 520 ACTACAAATATTCAGTATGAACAGACAGAGATAGAAGAAACAGATTATCCATTTGAGATG 579
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 416 ACTACAAATATTCAGTATGAACAAACAGAGATAGAAGAAACAGATTATCCATTTGAGATG 475
Query 580 GCAAAGGAATCTGAACCGGTCAGTGAAAAGTTGAAAGGCTTGCCTTTTGGTATCATGCAA 639
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 GCAAAGGAATCTGAACCGGTCAGTGAAAAGTTGAAAGGCTTACCTTTTGGTATCATGCAA 535
Query 640 CCTAGATCAGATTTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTTGAGGTCAAAGAGC 699
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCTAAATCAGATTTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTTGAGGTCAAAGAGC 595
Query 700 GGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAAGCAAAAGGATAAT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAAGCAAAAGGATAAT 655
Query 760 GTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCAAATTTCACTGTCATTCTATTTCATTAT 819
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 GTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCGAATTTCACTGTCATTCTATTTCATTAT 715
Query 820 GATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAAGCCATACACATTGTT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAAGCCATACACATTGTT 775
Query 880 GCACATAACCAGACAAAATGGTGGTTCGCGAAACGTTTTCTCCATCCTGATATTGTCTCC 939
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 GCACATAACCAAACAAAATGGTGGTTTGCGAAACGTTTTCTCCATCCTGATATTGTCTCC 835
Query 940 ATCTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAGAATTTCAACCCGGAA 999
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 836 ATTTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAGAATTTCAACCCTCAA 895
Query 1000 AAGTACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCAACCGGCCTTGCACCCA 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGTACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCAACCGGCCTTGCACCCA 955
Query 1060 AACTCAACCGAAGTTCACCATAGAATTACAGTTCGGTCTAGAACGAAAATATTTCATAGG 1119
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 956 AACTCAACTGAAGTTCACCATAGAATTACAGTCCGGTCTAGAACGAAAATATTTCATAGG 1015
Query 1120 CGAGTTTACGATAGTAGAGGCAATATGAAGTGTTCAAATGCTAGTGAAGGGCCCCCATGC 1179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1016 CGAGTTTACGATAGTAGAGGCAATATGAAATGTTCAAATGCTAGTGAAGGGCCCCCATGC 1075
Query 1180 ACCGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGATCTGCGTGGTTTTGCACTTGG 1239
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1076 ACAGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGATCTGCATGGTTTTGCACTTGG 1135
Query 1240 AATCTAATACAAAATGATCTGGTTCATGGGTGGGGAATGGATATGAAACTTGGTTACTGT 1299
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1136 AATCTAATACAAAATGATCTGGTTCATGGTTGGGGAATGGATATGAAACTTGGATACTGT 1195
Query 1300 GCTCAGGGTGACCGTAGCAAGAAAGTAGGCATTGTCGACAGTGAATATATCTTCCATCAA 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCTCAGGGTGACCGTAGCAAGAAAGTAGGCATTGTCGACAGTGAATATATCTTCCATCAA 1255
Query 1360 GGCATTCAAACTCTAGGTGGAAGCGGTTATCCCGATAAGAAGAACTCAGCTCGCAGTGGA 1419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 GGCATTCAAACACTAGGTGGAAGCGGTTATCCCGATAAGAAGAACTCAGCTCGCAGCGGA 1315
Query 1420 GTGAATCGGAGACGCGGTTCTGCGACTTTTGATTCAAGAACAGAGATACGGAGACAATCA 1479
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GTAAATAGGAGACGCGGTTCTGCGACTTTTGATTCAAGAACAGAGATACGGAGACAATCA 1375
Query 1480 ACGTGGGAGCTTCAAGCTTTTAAAGAACGGTGGAACCAAGCAGTTGCAGAAGACAAGA-A 1538
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1376 ACGTGGGAGCTGCAAGCTTTTAAAGAACGGTGGAACCAAGCGGTTGCAGAAGACAA-ATA 1434
Query 1539 TTGGGCCGACCGATCTTCATCGACCCGGAACCGAATTGGCAATAACCGGAGATTAAAAAG 1598
|||| || || |||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 1435 CTGGGTGGAGCGGTCTTCACCGAGCCGGAACCGAATAGGCAATAACCGGAGATTAAAAAG 1494
Query 1599 AAGTAGTGTGATTCCAAGTTTAGTGCAGAGGAAAGCTGAAGAGACAACAACATAAACAGA 1658
||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1495 AAGTAGTATGATTCCAAGTTTATTGCAGAGGAAAGCTGAAGAGACTACAACATAAACAGA 1554
Query 1659 TACAGTTTTAATCAGATTAAATATAGAGAAAGtttttttttttttGGTCTCATTGTTATA 1718
||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct 1555 TACAGTTTTAATCAGATTAAATATAGAGAAA-TGTTTTTTTGGTTGGTCTCATTGTTATA 1613
Query 1719 TATAAGTTAATAGTTAATCATTTTAC-TCTCTTTGATTAGTGTAGTTTCCATGGTCTTCT 1777
||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||
Sbjct 1614 TATAAGTTAATAGTTAATCATTT-ACCTCTCTTTGATTAGTGTAGTTTTCATGATCTTCT 1672
Query 1778 TT 1779
||
Sbjct 1673 TT 1674
> AT1G11170.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:3740765-3744675 FORWARD LENGTH=1763
Length=1763
Score = 1011 bits (547), Expect = 0.0
Identities = 985/1191 (83%), Gaps = 51/1191 (4%)
Strand=Plus/Plus
Query 393 GTCTATTAAATCATGGAAGTCACTTGTTAAGAGAAGAAA-CAATGCTCAAGAAGGGGGTA 451
|||||| ||||||| ||||||||||||||| |||| ||| |||||||||||||| | |||
Sbjct 257 GTCTATCAAATCATTGAAGTCACTTGTTAAAAGAA-AAACCAATGCTCAAGAAGTGAGTA 315
Query 452 AAT-CGTCGTGGAAAATGAAACCGATTGTGG-TGCTCATGTGTACAG-TACTTTTGATCT 508
||| || |||||||||||| || || ||| | ||||||||||||| | ||||||||||
Sbjct 316 AATCCG-GGTGGAAAATGAAGCCCTTTTTGGCT-CTCATGTGTACAGCT-CTTTTGATCT 372
Query 509 TTTGGTATAAGACTACAAATATTCAGTATGAACAGACAGAGATAGAAGAAACAGATTATC 568
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 373 TTTGGTATAAGACCACAAATATTCAGTTTGAACAAACAGAGATAGAAGAAACAGATTATC 432
Query 569 CATTTGAGATGGCAAAGGAATCTGAACCGGTCAGTGA-AAAGTTGAAAGGCTTGCCTTTT 627
| ||||| ||||| |||||||||||| | || | || ||| || |||||||||||| |
Sbjct 433 CTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGATAAA-TTAAAAGGCTTGCCTCGT 491
Query 628 GGTATCATGCAACCTAGATCAGAT-TTGGAGTTAAAGCCACTTTGGTCAAGTA-GTAGTT 685
|| ||||| || ||||||||||| || || |||||||| || ||||| || | |||||
Sbjct 492 GGAATCATACAGTCTAGATCAGATCTT-GAATTAAAGCCTCTCTGGTCTAG-AGGTAGTC 549
Query 686 TGAGGTCAAAGAGCG-GCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTT 744
||||||||||| | | | ||| |||| |||||||||||||||||||| || |||||||||
Sbjct 550 TGAGGTCAAAGGGTGTG-GAAATGACTAACCGTAACTTGTTGGCAATACCCGTAGGACTT 608
Query 745 AAGCAAAAGGATAATGTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCAAATTTCACTG-T 803
|||||||||| ||| || || ||| ||||||||||||||||||| || |||||||| | |
Sbjct 609 AAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTTCCCGCGAATTTCAC-GAT 667
Query 804 CATTCTATTT-CATTATGATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAA 862
|||| ||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||
Sbjct 668 TGTTCT-TTTCCATTATGATGGAAATATGGATAAATGGTGGGATCTGGAGTGGAGTTCAA 726
Query 863 AAGCCATACACATTGTTGCACATAACCAGACAAAATGGTGGTTCGCGAAACGTTTTCTCC 922
|| ||||||| || |||||||| |||||||| ||||||||||| || ||||| || ||||
Sbjct 727 AATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTTGCAAAACGATTCCTCC 786
Query 923 ATCCTGATATTGTCTCCATCTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGG 982
|||| ||| |||| ||||| || |||||| ||||||||||||| || ||||||||||| |
Sbjct 787 ATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGACGAGGATCTTGGAGTAG 846
Query 983 AGAATTTCAACCCGGAAAAG-TACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCT 1041
|||||||||| || | | || || ||| |||||||||| ||| ||||||||||||||||
Sbjct 847 AGAATTTCAATCCAG-AGAGATATTTGAAGATAGTTAAATCAGTGGGACTGGAGATATCT 905
Query 1042 CAACCGGCCTTGCACCCA-AACTCAACCGAAGTTCACCATAGAATTACAGTTCGGTCTAG 1100
|||||||| ||| | ||| ||||| || ||| | ||||||| ||| || | || ||||
Sbjct 906 CAACCGGCTTTGGA-CCACAACTCGACTGAAATACACCATAAAATCACTCTCCGTTCTAA 964
Query 1101 AACGAAA-ATATTTCATAGGCGAGTTTACGAT-AGTAGAGGCAATATGAAG-TGTTCAAA 1157
||| ||| | |||||||||| |||||||| || | ||||||| ||| ||| ||||| ||
Sbjct 965 AAC-AAAGAAATTTCATAGGAGAGTTTAC-ATCAATAGAGGCCATA-AAAGATGTTCTAA 1021
Query 1158 TGCTAG-TGAAGGGCCCCCATGCACCGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGA 1216
| |||| | || || || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1022 TACTAGCT-CAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCCGGTGTTTTCGA 1080
Query 1217 GATCTGCGTGGTTTTGCACTTGGAATCTAATACAAAATGATCTGGTTCATGGGTGGGGAA 1276
| |||| ||| |||||||||||||||| ||||| |||||| |||||||||| |||||||
Sbjct 1081 AAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCATGGATGGGGAA 1140
Query 1277 TGGATATGAAACTTGGTTACTGTGCTCAGGGTGACCGTA-GCAAGAAA-GTAGGCATTGT 1334
|||||||||||||||| ||||| || ||||| ||||| | | || ||| ||||| |||||
Sbjct 1141 TGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACG-AA-AAACGTAGGGATTGT 1198
Query 1335 CGACAGTGAATATATC-TTCCATCAAGGCATTCAAACTCTAGGTGGAAGCGGTTATCCCG 1393
|| || || |||||| ||| ||||||||||||||||| |||||| ||| | || || |
Sbjct 1199 GGATAGCGAGTATATCCTTC-ATCAAGGCATTCAAACTTTAGGTGAAAGTG-TT--CCTG 1254
Query 1394 ATAAGAAGAACTCAGCTCGC-A-GTGGAGTGAATC-GGAGACGCGGTTC-TGCGACTTTT 1449
| |||||||| | ||||| | || | | || | |||||| || | | | ||||||
Sbjct 1255 AGAAGAAGAAGACGGCTCGTGATGTTG-G-GAC-CAGGAGACAAGGC-CATACAACTTTT 1310
Query 1450 GATTCAAGAACAGAGATACGGAGACAATCAACGTGGGAGCTTCAAGCTTTTAAAGAACGG 1509
||||||||||| |||||| |||||||||| || |||||||||||| |||||||||||||
Sbjct 1311 GATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAACGA 1370
Query 1510 TGGAACCAAGCAGTTGCAGAAGACAAGAATTGGGCCGA-CCGATCTTCATC 1559
|||| | |||| || | |||||||| || ||| ||| || ||| |||||
Sbjct 1371 TGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCC-ATCGTCATC 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5