BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475202
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61170.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1465 0.0
AT1G11125.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 1e-43
> AT1G61170.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 19 plant structures; EXPRESSED DURING: 12 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:22549638-22550675 FORWARD LENGTH=1038
Length=1038
Score = 1465 bits (793), Expect = 0.0
Identities = 900/950 (95%), Gaps = 14/950 (1%)
Strand=Plus/Plus
Query 1 GCTGTCACCACACAACACAACCAAAGAGTACTTACTACTCTCTAATCTCCGATCAAACGA 60
|||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||
Sbjct 1 GCTGTCACCACACAACACAACC-AAG-G-A-GTACTACTCTCTAATCTCCGATCAAACGA 56
Query 61 CGtcttctcttctctctctcttctctGAATGGGTAATTGCTGCGTCGGCTCCGGTACCAC 120
|||| |||| | |||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 57 CGTCGTCTC-T-TCTCTCTC-TCTCT-AATGGGTAATTGCTGCGTCAGCTCCGGTACCAC 112
Query 121 AGATCGGGAAAACGAGAACGTTTCCGACAAGAACACAACCATTGTCGAAGAAGAGACAGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CGATCGGGAAAACGAGAACGTTTCCGACAAGAACACAACCATTGTCGAAGAAGAGACAGT 172
Query 181 AGTCAAAGAAGTCTTGTCTGAGACAACCTTGTTCACTCCTTCCTCTAGTTTCCACACTTC 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 173 AGTCAAAGAAGTCTTGTCAGAGACAACCTTGTTCACTCCTTCCTCTAGTTTCCGCACTTC 232
Query 241 GACGATCAAAGATCCGGTgaagaagaagatccgagaagaagaggagaagaaACCCGGTTT 300
|||| ||||||| |||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 233 GACGTTCAAAGACCCGGTGAAGACCAAGATCCGAGAAGATGAGGAGAAAAAACCCGGTTT 292
Query 301 CTTGAAAATGGCTTCAGACCCGGTTATGATTCGACCCGGTTCGGTTGATCCTGAAGAAGG 360
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 293 CTTGAAAATGGCTTCAGACCCGGTTTTGATCCGACCCGGTTCGGTTGATCCTGAAGAAGG 352
Query 361 ATCGGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAGCGAGAGTGTGTCTTCAACGGTTGT 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTCTGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAGCGAGAGTGTGTCTTCAACGGTTGT 412
Query 421 GATGAATGGTTACGATGAGGAAGATGTGATGATGAAACAGAGGAAATCTCAGAGATCTCC 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 413 GATGAATGGTTACGATGAGGAACATGTGATGATGAAACAGAGGAAATCTCAGAGATCTCC 472
Query 481 GGCGAAAGCTCGGACCCGGGTCACTGGTAATAATTATCCGACCCGGAGAACTGATCAATC 540
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 GGCGAAAACTCGGACCCAGGTCACCGGTAATAATTATCCGACCCGGAGAACTGATCAATC 532
Query 541 TCCACGTAAGAGAAACAACGGCACGTGTAATGGAGCGAGATACGGGTCGGGTGTGAGAGA 600
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 533 TCCACGTAAGAGAAACAATGGTACATGTAATGGAGCGAGATACGGGTCGGGTGTGAGAGA 592
Query 601 CCCGGGTGAGAGATCCGGAAGAAGGTCGAGATCGCCGGCGACGAATAGATCGGTGATGGA 660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 593 CCCGGGTGAGAGATCCGGAAGAAGGTCAAGATCGCCGGCGACGAATAGATCGGTGATGGA 652
Query 661 TTCGAATCAGAGTAGTCGGGTGGGTGGGGCAAAGACTAGGAAGAATAATCAGTCTCCGGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTCGAATCAGAGTAGTCGGGTGGGTGGGGCAAAGACTAGGAAGAATAATCAGTCTCCGGG 712
Query 721 TCGGGTCAGGCTAGATCCGAATAAAAACGGTTTGGATCAGCA---GCATCAGAATTACGG 777
|||||| || ||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 713 TCGGGTTAGACTAGATCCGGCTAAAAACGGGTTGGATCAGCAACAGCATCAGAATTACGG 772
Query 778 TTATACCACTGAGGAATTGTTAGAGAACCCGCTTGTTTCGTTAGAGTGTTTCATATTTCT 837
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTATACCACAGAGGAATTGTTAGAGAACCCGCTTGTTTCGTTAGAGTGTTTCATATTTCT 832
Query 838 CTGaaaaa-aaGAATATTTCGATGGGAAAAATATTTTCTCATTTTGACGTTGGATTTGTA 896
||||||| ||||||||||||||||||| ||| | ||||||||| ||||||||||| ||
Sbjct 833 TTGAAAAAGAAGAATATTTCGATGGGAATAATGTCTTCTCATTT-GACGTTGGATTCATA 891
Query 897 ATTCGTAAAGCTACTTACTTAATTACGT-ACCTCTGTAATTCATTTCTGT 945
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 892 ATTCGTAAAGCTACTTACTTAATTACGTTACCTCTGTAATTCATTTCTGT 941
> AT1G11125.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61170.1).
| chr1:3718783-3719711 FORWARD LENGTH=929
Length=929
Score = 178 bits (96), Expect = 1e-43
Identities = 317/415 (76%), Gaps = 50/415 (12%)
Strand=Plus/Plus
Query 165 TCGAAGAAGAGACAGTAGTCAAAGAAGTCTTGTCTGAGACAACCTTGTTCACTCCTTCCT 224
|||| ||||||||||||||||||||||||||||| || || || ||| ||||| | |||
Sbjct 149 TCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCACT--T-CCT 205
Query 225 CTAGTTTCCACACTTCGACGATC-A-AAGA-TCCGGTgaagaagaagatccgagaagaag 281
||| | ||| ||||||| | | |||| | || ||| || | ||| | ||||||||
Sbjct 206 CTAA---CGACAATTCGACGGTGGAGAAGACTACGTTGAC-AA-A-GATTCAAGAAGAAG 259
Query 282 aggagaagaaACCCGGT-TTCTTGAAAATG--GCTTCA-GACCCGGTTATGATTCGA-CC 336
|||||||||||||||| || ||| | | ||| || || |||||| ||| | | ||
Sbjct 260 AGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCT-CAAGAACCGGTTTTGAC-CAAGCC 317
Query 337 CGGTTCGGTTGATCCTGAAGAAGGATCGGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAG 396
| ||| |||||| || ||| ||||||||||||||||||||| |||||| || | ||
Sbjct 318 CAGTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTT-A-----AG 371
Query 397 CGAGAGTGTGTCTTCAACGGTTGTGA-TGAATGGTTACGATGAGGAAGATGTGATG-A-- 452
||||||| || ||| || | |||| | || | | |||| |||||||| |||| | |
Sbjct 372 CGAGAGTTTG-CTTT--CGATCGTGAAT-AA-G-T-ACGACGAGGAAGAAGTGAAGCAGA 424
Query 453 TGAAA-C--A-G-AG-GAAATCTCAGAGATCTCCGGCGAAAGCTCGGACCCGGGTCACTG 506
||||| | | | || || | | ||||||||||||||||| |||||| |||||||| ||
Sbjct 425 TGAAATCTCATGTAGTGAGA-C--AGAGATCTCCGGCGAAATCTCGGAACCGGGTCA-TG 480
Query 507 GTAATAATTATCCGACCCGGAGAACTGATCAA-TCTCCACGTAAGAGAAACAACG 560
|| || |||||| | ||||||||| ||| | ||||||||||||||||||||||
Sbjct 481 GT--TAGTTATCCAAACCGGAGAACCGAT-ATGTCTCCACGTAAGAGAAACAACG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48978293325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5