BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475208
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61150.1 | Symbols: | LisH and RanBPM domains containing pr... 1611 0.0
> AT1G61150.1 | Symbols: | LisH and RanBPM domains containing
protein | chr1:22542524-22544644 FORWARD LENGTH=1236
Length=1236
Score = 1611 bits (872), Expect = 0.0
Identities = 947/984 (96%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 161 CAGCTTGAAGAAGACGACGAAGATATGGCTACATCGAAGAAAATGATTACACGTGAAGAA 220
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 243 CAGCTTGAAGAAGACGACGAAGATATGGCTACTTCGAAGAAAATGATCACACGTGAAGAA 302
Query 221 TGGGAGAAGAAACTAAATGCTGTGAAGCTTAGGAAAGAAGATATGAATACTTTGGTGATG 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGGGAGAAGAAACTAAATGCTGTGAAGCTTAGGAAAGAAGATATGAATACTTTGGTGATG 362
Query 281 AATTTTCTTGTGACTGAGGGATATGTTGAAGCTGCTGAGAAATTCCAAAGGGAGTCTGGA 340
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AATTTTCTTGTGACTGAAGGATATGTTGAAGCTGCTGAGAAATTCCAAAGGGAGTCTGGA 422
Query 341 ACCAAACCAGAGATTGATCTTGCGACCATCACTGATCGAATGGCTGTAAAAAAGGCTGTC 400
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 423 ACCAAACCAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTT 482
Query 401 CAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTGAATGATTTGAATCCTGAGATACTA 460
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 483 CAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGATACTA 542
Query 461 GACACGAATCCCGAGCTCTTTTTTCATCTTCAGCAACAAAGGTTGATAGAATTAATTCGA 520
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 543 GACACGAATCCGGAGCTCTTTTTTCATCTTCAGCAGCAAAGGTTGATAGAATTAATTCGA 602
Query 521 CAAGGGAAGACAGATGAGGCCTTGGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAA 580
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 603 CAAGGGAAGACAGAAGAGGCCTTAGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAA 662
Query 581 GAAAACCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTGTTTTTGAAGAT 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 663 GAAAACCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTGTTTTTGACGAT 722
Query 641 GCCTCTACCTGCCCGGTTAAAGAGCTTCTTGACCTTTCCCACCGCCTTAAGACAGCAAGT 700
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 723 GCCTCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGACAGCAAGT 782
Query 701 GAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGATCCTAAACTTCCAAGC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGATCCTAAACTTCCAAGC 842
Query 761 TTGTTGAAAATGCTGATTTGGGCCCAAAATCAACTGGATGAGAAAGCAGTGTATCCGCAC 820
|||||||| ||| |||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 843 TTGTTGAAGATGTTGATTTGGGCTCAAACTCAACTGGACGAGAAAGCAGTGTATCCGCAC 902
Query 821 ATTAATGATTTGTCTACTGGTCAGCTCGAAGACCCGTCAGAATGATTCCGTACTTCTTTC 880
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATTAATGATTTGTCTACCGGTAAGCTCGAAGACCCGTCAGAATGATTCCGTACTTCTTTC 962
Query 881 TGCAATTGAAAAACAGTTGCAAAAAGGAACAATGAATGGTGCTCT-T-CTCTTCTCTTCA 938
|| |||| ||| |||| ||||||||||||||||||||||||||| | |||||| | |||
Sbjct 963 AGCCATTGGAAATCAGTAGCAAAAAGGAACAATGAATGGTGCTCTCTTCTCTTCCCGTCA 1022
Query 939 ATCTCAATAACTTATAATTCATATGCTTTCTGCTTTTCCTTTTCTTCTGCATCGGGATTT 998
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ATCTCAATAACTTACAATTCATATGCTTTCTGCTTTTCCTTTTCTTCTGCATCGGGATTT 1082
Query 999 GTTGAACCCGCAATCGTTAGGATATGTGGAGGGGAACATAAGCTGTTGTAGGCAATGAAT 1058
|||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1083 GTTGGACCCGCAATCGTTAGGATATGGGGAGGGGAACATAAGCTTTTGTAGGCAATGAAT 1142
Query 1059 TACTCTAGTCAAATGTTCTTATTATCAACATATTTTATGACTCATTGCATATGTGCATTT 1118
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1143 TACTCTAGTCAAATGTTCTTATTATCAACATATTTGATGACTCATTGCATACGTGCATTT 1202
Query 1119 GATTTGAATGAAGTTATCGACTTT 1142
||||||||||||||||||||||||
Sbjct 1203 GATTTGAATGAAGTTATCGACTTT 1226
Score = 215 bits (116), Expect = 8e-55
Identities = 132/139 (95%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 1 tttttttGTTTTATCAGATTGTAGAA-TTAGGGAAGAGACTTTCGCAGGCAATCTAGAAG 59
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 14 TTTTTTTGTTTTATCAGATTGTA-AATTTAGGGAAGAGACTTTCGCAAGCAATCTAGAAG 72
Query 60 CAAATCGATTC-CCAAATCTCCGGATTATTTGCAAGAATCATTCCCAAATAATCTTCCCC 118
|||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 73 CAAATCGA-TCGCCAAATCTCCGGATTATTTGCAAGAATCGTTCCCAGATAATCTTCCCC 131
Query 119 AGATTCTCCACTTCTCCAG 137
|||||||||||||||||||
Sbjct 132 AGATTCTCCACTTCTCCAG 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5