BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475213
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61130.1 | Symbols: SCPL32 | serine carboxypeptidase-like 32... 2049 0.0
> AT1G61130.1 | Symbols: SCPL32 | serine carboxypeptidase-like
32 | chr1:22529024-22531784 REVERSE LENGTH=1392
Length=1392
Score = 2049 bits (1109), Expect = 0.0
Identities = 1305/1399 (93%), Gaps = 16/1399 (1%)
Strand=Plus/Plus
Query 1 ATGATGAACATTTTCAATGTGTCTATTGCTTTGTATCTTTGCATTCTTTTCGTATTTGTT 60
||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 1 ATGATGAACATTTCCAATGTGTCCATTGCTTTGTATCTTTGCACTCTTTTCGCATTTGTT 60
Query 61 TCATCTGATAGTCCAGAAGCAATGAGAGATCTTGTGACAAACTTTCCTGGCCAACCAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCTGATAGTCCAGAAGCAATGAGAGATCTTGTGACAAACTTTCCTGGCCAACCAAAA 120
Query 121 GTGAGCTTCAGACATTACGCCGGTTATGTCACGGTTAATGA-AA-CAAATGGGAGGGCTT 178
||||||||||||||||||||||||||||||||||||||| | || || |||||||||||
Sbjct 121 GTGAGCTTCAGACATTACGCCGGTTATGTCACGGTTAAT-ATAATCAG-TGGGAGGGCTT 178
Query 179 TGTTTTATTGGTTCTTCGAAGCTATGACTCATTCGAACGTAAAGCCTTTAGTACTGTGGC 238
| |||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||
Sbjct 179 TATTTTATTGGTTCTTCGAAGCTATGACTCATCCTAACGTGAAGCCTTTAGTATTGTGGC 238
Query 239 TTAATGGAGGTCCTGGATGTTCTTCTGTGGGATACGGAGCAACACAAGAGATTGGTCCAT 298
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 239 TTAATGGAGGTCCTGGATGTTCTTCTGTGGGATACGGGGCTACACAAGAGATTGGTCCAT 298
Query 299 TTCTTGTTGATAACGAAGGAAAC-GATCTTAAGTTTAATCCCTACGCATGGAATAAAGAG 357
||||||| ||||| |||||||| | |||||||||||| ||||| |||||||||||||||
Sbjct 299 TTCTTGTCGATAATAAAGGAAACAG-TCTTAAGTTTAACCCCTATGCATGGAATAAAGAG 357
Query 358 GCCAATGTTCTCTTTCTTGAATCTCCGGCTGGTGTTGGGTTTTCGTATACAAACACAAGT 417
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 358 GCCAATATTCTCTTTCTTGAATCTCCTGCTGGTGTTGGGTTTTCGTATTCAAACACAAGT 417
Query 418 AGTGATTATAGAAAACTTGGCGATGACTTTACAGCGAGAGACTCATATATTTTTCTCCAG 477
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 418 AGTGATTATAGAAAACTTGGCGATGACTTTACAGCGAGAGACTCATACACTTTTCTCCAA 477
Query 478 AAGTGGTTCTTGAGATTCCCAGCTTACAAAGAAAACAACTTCTTTATCGCAGGAGAGAGC 537
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 478 AAGTGGTTCTTGAGATTCCCAGCTTACAAAGAAAAGGACTTCTTCATCGCAGGAGAGAGC 537
Query 538 TATGCAGGAAAATATGTACCCGAGCTTGCAGAGGTTATTTATGACAAGAACAAGGACCAC 597
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 538 TATGCAGGAAAATACGTACCCGAGCTTGCAGAAGTTATTTATGACAAGAACAAGGAC-A- 595
Query 598 AACGTCAGCTTGTCACTTCACATTAATTTAAAGGGGATTTTGCTTGGAAATCCATTGACA 657
| || | |||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 596 A-CGAAAACTTGTCTCTTCACATTAATTTAAAAGGCATTTTGCTTGGAAATCCATTGACA 654
Query 658 TCATATGCGGAAGATTGGACAGGATGGGTGGATTATGCGTGGAGCCACGCAGTGATATCA 717
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 655 TCATATGCGGAAGATTGGACAGGATGGGTGGATTATGCGTGGAATCACGCAGTGGTATCA 714
Query 718 GACGAGATATATAGAGTCATTGAAAGGA-GTTGCAATTTCAGTAGTAACACTACATGGGA 776
||||||| ||| |||||||| ||| | ||||||||||||||||| |||||||||||||
Sbjct 715 GACGAGACATACAGAGTCATA-AAACAAAGTTGCAATTTCAGTAGTGACACTACATGGGA 773
Query 777 CATTAAAGATTGCAAAGACGGCGTAGATGAAATACTCAAACAATACAAAGAGATCGATCA 836
| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 774 CGTTAAAGATTGCAAAGAAGGCGTGGACGAAATACTCAAACAATACAAAGAGATCGATCA 833
Query 837 ATTCAGCCTCTACACTCCTGTCTGCATGCACCATTCATCAAAGGTTGATTCCTACGTCAA 896
||||||||| ||||||||| ||||||||||||||||||||||||||||||| || | |||
Sbjct 834 ATTCAGCCTGTACACTCCTATCTGCATGCACCATTCATCAAAGGTTGATTCTTATG-CAA 892
Query 897 CTC-CAAGATGA---TACCAAGGCTGTTCGATGGATTTGACACGTGTTTGGATGATTACA 952
| ||||| || |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 893 ATTACAAGACGACGATACCGAGGCTGTTCGATGGATTTGACCCGTGTTTGGATGATTACG 952
Query 953 CAAAAGTATTCTACAATAGAGCTGATGTTCAAAAGGCTCTTCACGCGACTGATGGTGTTC 1012
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 CAAAAGTATTCTACAATAGAGCTGATGTTCAGAAGGCTCTTCACGCGACTGATGGTGTTC 1012
Query 1013 ATCTCAAGAACTGGACCATTTGCAACGCTGATATTCTAAATCACTGGAACTGGACTGATT 1072
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1013 ATCTCAAGAACTGGACCATTTGCAACGATGATATTTTAAATCACTGGAACTGGACTGATT 1072
Query 1073 CAAAGCGGTCCGTTTTGCCTATATATAAGAAACTCATTGCCGGAGGATATAGAGTTTGGG 1132
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1073 CAAAGCGATCCGTTTTGCCTATATATAAGAAACTCATTGCCGGAGGATTTAGAGTTTGGG 1132
Query 1133 TTTATAGTGGCGATACTGACGGAAGAGTTCCGGTACTCTCGACAAGGTACTGCATAAATA 1192
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 TTTATAGTGGCGATACTGATGGAAGAGTACCGGTACTCTCGACAAGGTACTGCATAAATA 1192
Query 1193 AACTGGAATTACCAATCAAAACAACTTGGAGGCCATGGTATCACGAGAAACAGGTAAGTG 1252
||||||||||||||||||| ||| |||||||||||||||| || |||| |||||||||||
Sbjct 1193 AACTGGAATTACCAATCAAGACAGCTTGGAGGCCATGGTACCATGAGACACAGGTAAGTG 1252
Query 1253 GATGGTTTCAAGAATATGAAGGTCTAACGTTTGCAACCTTCAAAGGAGCAGGACATGATG 1312
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1253 GATGGTTTCAGGAATATGAAGGTCTAACGTTTGCAACGTTCAGAGGAGCAGGACATGATG 1312
Query 1313 TGCCTTCGTTCAAACCCAGCGAATCTCTTGCGTTTTTCTCTGCCTTTCTCAATGGAGTTC 1372
||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1313 TGCCTTCCTTCAAACCTAGCGAATCCCTTGCATTTTTCTCTGCCTTTCTCAACGGAGTTC 1372
Query 1373 CTCCCCCTTTGTCGCGATA 1391
|||| ||||||||||||||
Sbjct 1373 CTCCTCCTTTGTCGCGATA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5