BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475218
Length=2640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61080.1 | Symbols: | Hydroxyproline-rich glycoprotein fami... 1993 0.0
AT1G11070.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 233 5e-60
> AT1G61080.1 | Symbols: | Hydroxyproline-rich glycoprotein family
protein | chr1:22493194-22497019 REVERSE LENGTH=2724
Length=2724
Score = 1993 bits (1079), Expect = 0.0
Identities = 1470/1650 (89%), Gaps = 62/1650 (4%)
Strand=Plus/Plus
Query 1 ATGTTGTTCGGTCGTAAATCATCAAGCAAGTTACAGCCTGTAAAAGGGCAAGCATCGCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTGTTCGGTCGTAAATCATCAAGCAAGTTACAGCCTGTAAAAGGGCAAGCATCACCT 60
Query 61 AAAGTTAGCAAGAATAGCAAGCAGGATGTTAAAActtcttcttcttcttcttcttcacct 120
||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 AAAGTTAGCAAGAGTAGCAAGCAGGATGTTAAAA---------CTTCTTCTTCTTCACCT 111
Query 121 aaaccttcttcttcACCTATACCGATTAGATCATCCAAGTCAATATTATCCGGGAGCAAC 180
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 112 AAACCTTCTTCGTCACCTATACCGATTAGATCATCTAAGTCAATATTATCCGGGAGTTAC 171
Query 181 TTAACATCATCAAGACGTGGTTCATCGCCTATAGGCATCCTCAAGAATATTTCTGTTAAA 240
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 172 TTAACATCATCAAGACGTGTTTCATCGCCTATAGGCAACCTCAAGAATATTTCTGTTAAA 231
Query 241 GAAGCTAAGAGCCCCAAGACGAGCAGCTCACCTAAATGGACAGGCAATTTTATTCTTATG 300
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 232 GAAGCTAGGAGCCCCAAGACGAGCAGCTCGCCTAAATGGACAGGAAATTTTATTCTTATG 291
Query 301 GTCGAGCTTCGCAGGAAGATCTTTACCTTTAGAGACATCATTGATCTTTCTACTCTTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 292 GTCGAGCTTCGCAGGAAGATCTTTACCTTTAGAGACATCATTGATCTTTCTACCCTTGAT 351
Query 361 GGTTCTCCTTCCATAACCGATGTGCGTAAACCGCAACCTTATATCCTTATGGTGATGCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGTTCTCCTTCCATAACCGATGTGCGTAAACCGCAACCTTATATCCTTATGGTGATGCAT 411
Query 421 ACAATGAAAGATCTCCAGAAAATTTGTCCTGAGATCATTCATAGCTCCCATATAATGGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 412 ACAATGAAAGATCTCCAGAAAATTTGTCCTGAGATCATTCATAGCTCCCATATCATGGAA 471
Query 481 ATTAGACGTGCAAATGTCGATAAGGTTCTTGACCATTTCTTTAGTGCTTTGAAATCCATT 540
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 472 ATTAGACGTGCAAATGTAGATAAGGTTCTTGACCATTTCTTTAATGCTTTGAAATCCATT 531
Query 541 GGAGATTCGTGGATTGATAACCCCGAATGGATAACTAAATCCAAGTACTGGAGTAGCAGC 600
|||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 532 GGAGATTCATGGATTGATAACCCTGAATGGATAGCTAAATCCAAGTATTGGAGTAGCAGC 591
Query 601 GTCGGGAAGAATCAGTCCGATCGACT-AGTGGAAAAGGTGTTAGCTGCATTAGATGGACT 659
||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||
Sbjct 592 GTCGGGAAGAATCAGTCTGATCG-CTTAGTGGAAAAAGTGTTAGCTGCATTAGATGGACT 650
Query 660 GATTAAGATGTCGAAAGAAAGGTTCGATATGATGGAGATCGATGATGAAGAAGAGAAAAA 719
|||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 651 GATTAAGATGTCCAAAGAGAGGTTTGATATGATGGAGATTGATGAAGAAGAAGAGAAGAA 710
Query 720 AGAATCCACGAGTCCACAGACAGCTAAAACCTCGGGGAGTCGAGTTTTATCGCCATCCGA 779
||| ||||| ||||||||||||| |||||| ||| | |||||||||||||||||||||||
Sbjct 711 AGAGTCCACTAGTCCACAGACAGGTAAAACATCGAGCAGTCGAGTTTTATCGCCATCCGA 770
Query 780 ATCATTCTCCGATAGCAAATCATCATTCGATAGCAGAAGCTCGTTCTGCGGGTCACCGAT 839
|||||||||||||||||||||||| || | |||||||| |||||| |||||||||||||
Sbjct 771 ATCATTCTCCGATAGCAAATCATCCTTTGGTAGCAGAAACTCGTTTTGCGGGTCACCGAC 830
Query 840 CACGCCAAGATCAGTTCTACCAGAACCGATGATGGGTTCACCGGGAAGAGTTGGAGACTT 899
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 831 CACGCCAAGATCAGTTCTACCAGAATCGATGATGGGTTCACCGGGAAGAGTTGGAGACTT 890
Query 900 TGCAAACTCTGCATCACATCTTCTGTGGAATATGAGAGTTCAAGCACTTGAGAAGCTTAG 959
||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 891 TGCAAACTCTGCATCTCATCTTTTATGGAATATGAGAGTTCAAGCACTTGAAAAGCTTAG 950
Query 960 TCCTATCGATGTTAAGCGACTCGCTATCCACATCTTGTCACAGAAAGAAGCTCAGCAACC 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 951 TCCTATCGATGTTAAACGACTCGCTATCCACATCTTGTCACAGAAAGAAGCTCAGGAACC 1010
Query 1020 AAATC-AAAGCAATTG-TGAAGATGAGATTAGTGTTGTTGAAGAGATCAAGCAGAAGAAG 1077
||| | |||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1011 AAA-CGAAAGCAAT-GATGAAGATGTGATTAGTGTTGTTGAAGAGATCAAGCAGAAGAAG 1068
Query 1078 GATGAGATAGAGAGCATTGATGTGAAAATGGAGACAGAAGAATCTGTTGTTCTTGATGAA 1137
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1069 GATGAAATAGAGAGCATTGATGTGAAAATGGAGACAGAAGAATCTGTTAATCTTGATGAA 1128
Query 1138 GAA-C----------AA-G---AT-A---C--TGTCATGAAGATTTCTTCTTTGGATTCA 1176
||| | || | | | | | |||||||||| ||||| ||||| |||
Sbjct 1129 GAATCCGTTGTTCTTAATGGCGAACAAGACACTATCATGAAGATCTCTTCATTGGAGTCA 1188
Query 1177 ACATTTGAATCCAAACTCAATCCTTCAGAAAAATCTGAAAATTCGTCACAA-TTTTCACC 1235
|||| ||||||||||||||||| ||||||||||| ||||||||| |||||| ||||| ||
Sbjct 1189 ACATCTGAATCCAAACTCAATCATTCAGAAAAATATGAAAATTCATCACAACTTTTC-CC 1247
Query 1236 ACCACCGCCGcctcctcctcctcctcctTCATTATCCACTATAACAGCTGCATCTTTACC 1295
||||||||||||||||||||||||||| || ||||| ||||| | |||| ||||||||
Sbjct 1248 GCCACCGCCGCCTCCTCCTCCTCCTCCTCCACTATCCTTTATAAAAACTGCTTCTTTACC 1307
Query 1296 TTCTCAACCACCACCTACTCCTCCTCCTCCCCCGCAAATTACTGACGTGGCAATATCAAT 1355
| || ||| |||| || | |||| |||| || || || ||||| | |||||||||||
Sbjct 1308 T-CTT--CCATCACC-AC-C-TCCTACTCCGCC--AA-TTGCTGACATCGCAATATCAAT 1358
Query 1356 GCCACCTCCTCCGCCACCACCACCGCCTCCACCAACAGTTATGCCTTTAAAAGGCTCTGC 1415
|||||||||||||||||||||||||||||| ||| ||||||||||||| ||| || |||
Sbjct 1359 GCCACCTCCTCCGCCACCACCACCGCCTCCTCCAGCAGTTATGCCTTTGAAACACTTTGC 1418
Query 1416 TccaccaccaccaccaccaccGCCGCCACTAGAAAATATGCCTTTAAAAGGCTCTGCTCC 1475
|||||||||||||||||| || |||| || | ||||||||| ||| || ||||||
Sbjct 1419 TCCACCACCACCACCACC---GCTTCCACCAGCAGTTATGCCTTTGAAACACTTTGCTCC 1475
Query 1476 ACCACCGCCGCCACCTCCTCCACTT---CC---AAA---CACTGCAGTGGctccacctcc 1526
|||||| ||| | || || || || || ||| | |||| | ||||| ||
Sbjct 1476 ACCACCACCGACTCCACCAGCATTTAAGCCTTTAAAAGGCTCTGCTCCACCACCACCGCC 1535
Query 1527 accgcctccacctccaagaactgcagtggccccacctccacctcctcctccacctccagg 1586
||| ||||||| ||||| |||| || ||| ||||||||||| ||||| ||||||| |
Sbjct 1536 ACCTCCTCCACTTCCAACAACTATAGCGGCTCCACCTCCACCGCCTCC---ACCTCCAAG 1592
Query 1587 aactacagtggcaccaccaccgcctcctcc 1616
| || ||||||| |||||||| ||||||||
Sbjct 1593 AGCTGCAGTGGCCCCACCACCACCTCCTCC 1622
Score = 1753 bits (949), Expect = 0.0
Identities = 1174/1278 (92%), Gaps = 33/1278 (3%)
Strand=Plus/Plus
Query 1369 CCACCACCACCGCCTCCACCAACAGTTATGCCTTTAAAAGGCTCTGCTccaccaccacca 1428
|||||||||||| |||||||| || ||| ||||||||||||||||||| |||||||||
Sbjct 1474 CCACCACCACCGACTCCACCAGCATTTAAGCCTTTAAAAGGCTCTGCT---CCACCACCA 1530
Query 1429 ccaccaccGCCGCCAC-TAGAAAATATGCCTTTAAAAGGCTCTGCTCCACCACCGCCGCC 1487
|| ||||| || |||| | || | | | | | | | | ||| ||| || ||
Sbjct 1531 CCGCCACCTCCTCCACTTCCAACA-A---C--T-ATA-G--CGGCT---CCA---CCTCC 1574
Query 1488 ACCTCCTCCACTTCCAAACA-CTGCAGTGGctccacctccaccgcctccacctccaagaa 1546
||| ||||||| ||| || | |||||||||| ||||| ||||| |||||||||||| |||
Sbjct 1575 ACCGCCTCCACCTCC-AAGAGCTGCAGTGGCCCCACCACCACCTCCTCCACCTCCAGGAA 1633
Query 1547 ctgcagtggccccacctccacctcctcctccacctccaggaactac-agtggcaccacca 1605
|||||| || |||| ||||| ||||||||||||||||||||| | || ||||||||||
Sbjct 1634 CTGCAGCGG---CACCACCACCGCCTCCTCCACCTCCAGGAACT-CAAGCGGCACCACCA 1689
Query 1606 ccgcctcctcctccaccGATGCAAAACAGAGCACCACCGCCACCTCCAATGCCTATGGCA 1665
||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1690 CCGCCTCCTCCTCCACCTATGCAAAACAGAGCACCATCTCCACCTCCAATGCCTATGGGA 1749
Query 1666 AATAGTGGAAGTGAG-GGaccaccacctccaccacctcctatgcctctagctaatggagc 1724
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1750 AATAGTGGAAGTG-GTGGACCACCCCCTCCACCACCTCCTATGCCTCTAGCTAATGGAGC 1808
Query 1725 agcaccaccaccgccaccacctcCTATGGCTATGGCAAATGGAGCAGCAGGACCGCCTCC 1784
| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1809 AACACCGCCACCGCCGCCACCTCCTATGGCTATGGCAAACGGAGCAGCAGGACCGCCTCC 1868
Query 1785 ACCACCACCTCGAATGGATATGGCGAACGGTGCAGCTGGTCCACCGCCACCACCAGGAGC 1844
|||||||||||||||| ||||||||| || |||||||||||||| || |||||||||||
Sbjct 1869 GCCACCACCTCGAATGGGTATGGCGAATGGAGCAGCTGGTCCACCACCGCCACCAGGAGC 1928
Query 1845 TGGC-AGAAGCTTGCGTCCCAAGAAAGCAGCTACAAAGCTGAAAAGGTCAACACAATTAG 1903
| || ||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 1929 T-GCAAGAAGCTTGCGTCCCAAGAAAGCTGCCACAAAGCTGAAAAGGTCAACACAACTAG 1987
Query 1904 GAAACCTTTACAGAATCCTTAAAGGGAAAGTAGAAGGGCGTGATCCTAACGCCAAAACGG 1963
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1988 GAAACCTTTATAGAATCCTTAAAGGGAAAGTAGAAGGGCGTGATCCTAACGCAAAAACCG 2047
Query 1964 GCGGCGGAAGCGGAAGAAAAGCTGGAGTCGGAAGCGCCCCAGCTGGTGGAAAGCAAGGAA 2023
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2048 GCAGCGGAAGCGGAAGAAAAGCTGGAGCCGGAAGCGCTCCAGCTGGTGGAAAGCAAGGAA 2107
Query 2024 TGGCTGACGCTCTTGCTGAGATCACAAAGAAATCTGCATATTTTTTGCAAATACAAGCCG 2083
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TGGCTGATGCTCTTGCTGAGATCACAAAGAAATCTGCATATTTTTTGCAAATACAAGCCG 2167
Query 2084 ATATTGCAAAGTACATGAAGTCAATCAATGAGCTGAAGATTGAGATCACCAAGTTCCAGA 2143
|||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2168 ATATTGCAAAGTACATGACGTCAATAAATGAGCTGAAGATTGAGATCACTAAGTTCCAGA 2227
Query 2144 CTAAAGACATGACTGAGCTTCTTAGCTTCCACCGTAGCGTCGAATCAGTTCTTGAAAACC 2203
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2228 CTAAAGACATGACTGAGCTTCTTAGCTTCCACCGTCGCGTCGAATCAGTTCTTGAAAACC 2287
Query 2204 TAACAGATGAGTCACAGGTTCTTGCGCGATGCGAAGGGTTTCCGCAGAAGAAACTTGAAG 2263
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2288 TAACAGACGAGTCACAGGTTCTTGCCCGATGCGAAGGGTTTCCGCAGAAGAAACTCGAAG 2347
Query 2264 CAATGAGAATGGCAGTTGCATTGTACACGAAATTGCACGGTATGATCACCGAGCTACAGA 2323
||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2348 CAATGAGAATGGCTGTTGCATTGTACACGAAACTACACGGTATGATCACCGAGCTACAGA 2407
Query 2324 ACATGAAAATAGAACCTCCTTTGAATCAACTTCTTGATAAAGTAGAACGTTACTTCACAA 2383
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 2408 ACATGAAAATAGAACCTCCTTTGAACCAGCTTCTTGATAAAGTAGAACGTTACTTCACCA 2467
Query 2384 AGATCAAAGAAACAATGGTTGATATATCATCAAATTGCATGGAACTTGCATTGAAGGAAA 2443
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2468 AGATCAAAGAAACAATGGTTGATATCTCATCAAATTGCATGGAACTTGCATTGAAGGAAA 2527
Query 2444 AGAGAGACGAAAAGCTTGTGTCCCCCGATGCGAAGCCGAGCTTGAAGAAGACAGTAGGAT 2503
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2528 AGAGAGACGAAAAGCTCGTGTCCCCCGATGCAAAGCCGAGTTTGAAGAAGACAGTAGGAT 2587
Query 2504 CTGCTAAAATGCTTTGGAGGGCATTTCAGTTTGCATTCAAAGTCTACACATTTGCTGGAG 2563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2588 CTGCTAAAATGCTTTGGCGGGCATTTCAGTTTGCATTCAAAGTCTACACATTTGCAGGAG 2647
Query 2564 GACACGACGATCGCGCTGATTC-CTTAACCAGAGAGTTGGCTCATGAGATCCAAACTGAT 2622
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2648 GACACGACGATCGTGCTGATTCTCT-AACCAGAGAGTTGGCTCATGAGATCCAAACTGAT 2706
Query 2623 TCTGATCAGAATCCATGA 2640
||||||| ||| ||||||
Sbjct 2707 TCTGATCCGAACCCATGA 2724
> AT1G11070.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1);
Has 579 Blast hits to 567 proteins in 152 species:
Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113;
Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source:
NCBI BLink). | chr1:3690212-3693648 REVERSE LENGTH=2486
Length=2486
Score = 233 bits (126), Expect = 5e-60
Identities = 225/272 (83%), Gaps = 9/272 (3%)
Strand=Plus/Plus
Query 400 TATATCC-TTATGGTGATGCATACAATGAAAGATCTCCAGAAAATTTGTCCTGAGATCAT 458
||||||| ||||||||||| ||| |||||||||||||| || | ||||||||||||||
Sbjct 333 TATATCCAATATGGTGATGCGTACGATGAAAGATCTCCATAAGCTCTGTCCTGAGATCAT 392
Query 459 TCATAGCTCCCATATAATGGAAATTAGACGTGCAA-ATGTCGATAAGGTT-CTTGACCAT 516
| | |||||||| || | ||||| ||||||| || | || || || ||| |||||| ||
Sbjct 393 TGACAGCTCCCAAATCCTCGAAATGAGACGTG-AAGAAGTTGACAA-GTTGCTTGACAAT 450
Query 517 TTCTTTAGTGCTTTGAAATCCATTGGAGATTCGTGGATTGATAACCCCGAATGGAT-AAC 575
|||| | ||||||||||| ||||||||||| ||||| ||| ||| ||||||||| | |
Sbjct 451 TTCTACAACGCTTTGAAATCAATTGGAGATTCATGGATCGATGACCACGAATGGATCATC 510
Query 576 TAAATCCAAGTACT-GGAGTAGCAGCGTCGGGAAGAATCAGTCCGATCGACTAGTGGAAA 634
||||||||||| | | || || | | | ||||||||| ||| |||||||| |||||||
Sbjct 511 -AAATCCAAGTA-TAGAAGCAGTAACATAAGGAAGAATCTGTCTGATCGACTTGTGGAAA 568
Query 635 AGGTGTTAGCTGCATTAGATGGACTGATTAAG 666
||||||||||||||||||||||||||||||||
Sbjct 569 AGGTGTTAGCTGCATTAGATGGACTGATTAAG 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131086222059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5