BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475219
Length=538
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61070.1 | Symbols: LCR66, PDF2.4 | low-molecular-weight cys... 630 3e-180
> AT1G61070.1 | Symbols: LCR66, PDF2.4 | low-molecular-weight cysteine-rich
66 | chr1:22491733-22492542 REVERSE LENGTH=590
Length=590
Score = 630 bits (341), Expect = 3e-180
Identities = 492/558 (88%), Gaps = 38/558 (7%)
Strand=Plus/Plus
Query 1 TTTTGTCCAAACTCTATCTTAGATAATGAAGGTCTCTAGTCGTTTGATCTCAGCCCTTCT 60
||||||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||
Sbjct 48 TTTTGTCCAAACTCTCTCTTAAAAAATGAAGGTCTCTCCTCGTTTGAACTCAGCCCTTCT 107
Query 61 CCTATTGTTCATGATCCTTGCCACAGGGATTGGTCCGGTCACGGTAGAGGCACGGACGTG 120
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 108 CCTATTGTTCATGATCCTTGCCACAGTGATGGGTCTGGTCACGGTAGAGGCACGGACGTG 167
Query 121 TGAAACGAGTAGCAACTTGTTCAATGGACCATGTCTGAGCTCAAGCAATTGCGCCAATGT 180
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 168 TGAAACAAGTAGCAACTTGTTCAACGGACCATGTCTGAGCTCAAGCAATTGCGCTAATGT 227
Query 181 TTGCCACAATGAAGGTTTTTCAGATGGTAACTGCCGTGGATTCCGTCGTCGCTGCTTCTG 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 228 TTGCCACAATGAAGGTTTTTCAGATGGTGACTGCCGTGGATTCCGTCGTCGCTGTTTGTG 287
Query 241 CACCAGACCCTGTTGATAGATGATCTATCTtatatatatatagtgaatatatattatGAA 300
||||||||| |||||||||||||||||| ||||||||| || | |||||||||||| ||
Sbjct 288 CACCAGACCTTGTTGATAGATGATCTAT-TTATATATA-AT-G--AATATATATTATCAA 342
Query 301 AAACTTAATAATCTTTTCTAT-----CT--CT-TT-GATCATTTTCTGACTTTGATCCTA 351
||||||||||||||||||||| || || || ||||||||||||||||| ||||||
Sbjct 343 AAACTTAATAATCTTTTCTATGTTTTCTATCTCTTTGATCATTTTCTGACTTTTATCCTA 402
Query 352 --T--CGTTTGCCTTTGAAACAACAATAAGGAGGAGATCTAAAAATCTTTAAACCCTTTT 407
| |||||||| ||||||||||||||||||| | ||||||| ||||||| |||||||
Sbjct 403 GATATCGTTTGCCCTTGAAACAACAATAAGGAG-A--TCTAAAA-TCTTTAAGCCCTTTT 458
Query 408 GGTTTGAGCTTTCTATTATAGTATTATCTACCA-GTGTTAAACAGTACTGCCTTTTAGTA 466
|| |||||||||| | ||||||||||| | |||||||| || |||||||||||
Sbjct 459 GGCTTGAGCTTTC-------G-ATTATCTACCAAG-GTTAAACAATAGTGCCTTTTAGTT 509
Query 467 AGCATTTTCAAGTCTTATGACTATT-ATGTATCCAATTAGATTGGACTTACGTATC---T 522
| ||||||||| |||||||||| || |||||||||||||||||||||||||| ||| |
Sbjct 510 ACCATTTTCAAATCTTATGACTTTTTATGTATCCAATTAGATTGGACTTACGCATCCAAT 569
Query 523 A-AA-TAAAACATGATTA 538
| || |||||||||||||
Sbjct 570 ATAAATAAAACATGATTA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25770117411
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5