BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475221
Length=2306
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61040.1 | Symbols: VIP5 | plus-3 domain-containing protein ... 3648 0.0
> AT1G61040.1 | Symbols: VIP5 | plus-3 domain-containing protein
| chr1:22483207-22485969 FORWARD LENGTH=2353
Length=2353
Score = 3648 bits (1975), Expect = 0.0
Identities = 2212/2324 (95%), Gaps = 26/2324 (1%)
Strand=Plus/Plus
Query 1 TTCATCATCAGCTTCCTCTCGACAA-TTCGACATTA--C--TCG---TT---CCTTTCCT 49
|||| |||| ||||||||||||||| |||||||||| | ||| || || |||||
Sbjct 21 TTCAGCATCTGCTTCCTCTCGACAATTTCGACATTACTCTTTCGTTTTTCACCCCTTCCT 80
Query 50 TCTCCTCCTTTAGCCGCCCGCCGTCGATCTCTGCAACACTTTCCGGCGATTTCTCCATCT 109
||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 81 TCTTCTCCTTTAGCCGCCCGTCGTCGATCTCTGCAACACTTTCCGACGATTTCTCCGTCT 140
Query 110 CATCTCAAGTGATAGTGAGAACCATTTAAATTCGTTCGTTTGTGAGCTTCCTTTGATG-C 168
||||||||||| ||||| ||||||||||||||||| |||||||| ||||| || |
Sbjct 141 GATCTCAAGTGACAGTGAAAACCATTTAAATTCGTT-ACTTGTGAGCCTCCTTAGAAGAT 199
Query 169 TATGGGTGATTTAGAGAATTTGCTTTTGGAAGCTGCTGGGAGAACAAATTCAGCAGGGAG 228
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TATGGGTGATTTAGAGAACTTGCTTTTGGAAGCTGCTGGGAGAACAAATTCAGCAGGGAG 259
Query 229 GAGTCGCCATCCTCCATCATCGAGGAGACGTGAGGGTTCTTACTCTGATGGTAGTAGCGA 288
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GAGTCGTCATCCTCCATCATCGAGGAGACGTGAGGGTTCTTACTCTGATGGTAGTAGCGA 319
Query 289 TTCAAGGGATGATTCTGATGAAGATCGCGGCTATGCTAGTAGGAAACCGTCTGGGTCTCA 348
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 320 TTCAAGGGATGATTCTGATGAAGATCGTGGCTATGCTAGTAGAAAACCCTCTGGGTCTCA 379
Query 349 AGTTCCTTTGAAGAAGAGATTGGAGGCAGAGAGAGAAGATCGAGCCGCTCGAGTTGAAGG 408
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 380 AGTTCCTTTGAAGAAGAGATTGGAGGCAGAGAGAGAAGATCGAGCTGCTCGAGTTGAAGG 439
Query 409 TGGTTATGGTGATGGACCATCTGATCGTGAAGGTGACAGCAGCGAGGAGTCTGATTTTGG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TGGTTATGGTGATGGACCATCTGATCGTGAAGGTGACAGCAGCGAGGAGTCTGATTTTGG 499
Query 469 GGATGACCTTTACAAGAATGAGGAAGACCGGCAGAAGCTTGCTGGAATGACTGAGTTTCA 528
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 500 AGATGACCTTTACAAGAATGAGGAAGACAGGCAGAAGCTTGCTGGAATGACTGAGTTTCA 559
Query 529 GAGAGAGATGATTCTGGCTGAACGTGCTGATAAGAAAGGTGATAAGAACTTCACTGAGAA 588
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GAGAGAGATGATTCTCTCTGAACGTGCTGATAAGAAAGGTGATAAGAACTTCACTGAGAA 619
Query 589 ACTTAGATCGAAGAGAGAAAATGAGAAAACCCCTGTTTCTAAAAAGGAGACCCAGCCTCT 648
|||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 620 ACTTAGGTCCAAGAGAGAAAGTGAGAAAACCCCTGTTTCTAAAAAGGAGACTCAGCCTCT 679
Query 649 TCCGGCCTCTCGTGGTGTGCGTTCATCTGCTAGATCTGCAGACAGAGCCACTGCTAAGGA 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 680 TCCGGCCTCTCGTGGTGTGCGTTCATCTGCTAGATCTGCAGACAGAGCCGCTGCTAAGGA 739
Query 709 TGATGCCCTGAACGAATTGAGGGCAAAGCGTATGAAGCAGCAGGACCCAGCGGCTCTCAG 768
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 740 TGATGCCCTGAATGAATTGAGGGCGAAGCGTATGAAGCAGCAGGACCCAGCAGCTCTCAG 799
Query 769 GAAACTGAGAGATGCATCAAAAGGTGGTTCAGGTAGTCGAGATTTCTCATCAATGAAGAG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 800 GAAACTGAGAGATGCATCAAAAGGTGGTTCAGGTAGTCGAGATTTCTCATCAACGAAGAG 859
Query 829 GAAACCGTTAGCTTCCTCCAATTTGAGTAGCTCCAGCCAAAGTGACAGTGATAGTAGGTC 888
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 860 GAAACCGTTAGCTTCCTCCAATTTGAGTAGTTCCAGCCAAAGTGACAGTGATAGTAGGTC 919
Query 889 TCAGAGTGATGATGAAGGCTCGAATGCAGGAATGCTAGACAGTGATGATGACAGGTCAGA 948
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 920 TCAGAGTGATGATGAAGGCTCGAATGGAGGAATGCTAGACAGTGATGATGACAGGTCAGA 979
Query 949 TGTGCCTACGTTTGAGGATGTTAAGGAAATTACCATCAGACGGTCTAAGCTTGCCAAATG 1008
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 980 TGTGCCTACGTTTGAGGATGTTAAGGAAGTTACCATTAGACGGTCTAAGCTTGCCAAATG 1039
Query 1009 GCTAATGGAGCCTTTCTTTGAAGAGCTTATAGTTGGGTGCTTTGTGAGGGTTGGGATCGG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GCTAATGGAGCCTTTCTTTGAAGAGCTTATAGTTGGGTGCTTTGTGAGGGTTGGGATCGG 1099
Query 1069 AAGGTCAAAGAGTGGTCCAATTTACAGACTCTGCTGGGTGAAGAATGTAGATGCAACCGA 1128
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1100 AAGGTCAAAGAGTGGTCCAATTTACAGACTCTGCTGGGTGAAGAATGTTGATGCAACCGA 1159
Query 1129 TCCAGACAAGACTTACAAGCTAGAGAATAAAACTACACACAAGTACCTTAACGTCGTCTG 1188
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TCCTGACAAGACCTACAAGCTAGAGAATAAAACTACACACAAGTACCTTAACGTCGTCTG 1219
Query 1189 GGGAAATGAAACCTCGGCGGCTCGATGGCAAATGGCTATGATCTCAGATGGTCATCCGCT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GGGAAATGAAACCTCGGCGGCTCGATGGCAAATGGCTATGATCTCAGATGGTCATCCGCT 1279
Query 1249 GGAGGAAGAGTATAGGCAATGGATCAGAGAGGTTGAGCGAACAAATGGTCGCATGCCCAC 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GGAGGAAGAGTATAGGCAATGGATCAGAGAGGTTGAGCGAACAAATGGTCGCATGCCCAC 1339
Query 1309 AAAGCAAGATATATCGGAGAAGAAAGAAGCGATCCAAAGAATAAACAGTTTCGTTTACTC 1368
||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 1340 AAAGCAAGATATATCGGAGAAGAAAGAAGCGATACAAAGAACAAACAGTTTTGTTTACTC 1399
Query 1369 TGCGGAAACTGTCAAACAGATGTTGCAGGAGAAAAAATCCGCCTCGGTCAGGCCAATGAA 1428
|||||||||||| ||||||||| |||||||||||||||| || || ||||||||||||||
Sbjct 1400 TGCGGAAACTGTTAAACAGATGCTGCAGGAGAAAAAATCTGCGTCAGTCAGGCCAATGAA 1459
Query 1429 TGTTGCGGCCGAGAAAGATCGTCTTAGAAAAGAGTTGGAAATTGCGCAGAGCAAAAACGA 1488
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1460 TGTTGCGGCCGAGAAAGATCGGCTTAGAAAAGAATTGGAAATTGCGCAGAGCAAAAACGA 1519
Query 1489 TGAAGCAGGTGTAGAGAGGATCAAAACTAAAATCAAACAGCTCGACGCTTCACGGAACAA 1548
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1520 TGAAGCAGGTGTAGAGAGGATCAAGTCGAAAATCAAACAGCTCGACGCTTCACGGAACAA 1579
Query 1549 GAAAGGGGTAGATAAGAAAGCGCTTAAACTTGCCGAGATGAACAAGAAGAACAGAGCCGA 1608
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1580 GAAAGGGGTAGATAAAAAAGCGCTTAAACTTGCTGAGATGAACAAGAAGAACAGAGCCGA 1639
Query 1609 GAATTTCAAGAACGCATCTGAGGTAAAATCAATAAGC-GCTAGTCTCAAAGCCGGTGAAG 1667
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1640 GAATTTCAAGAACGCATCTGAGGTAAAATCAATAA-CTGCTAGTCTCAAAGCCGGTGAAG 1698
Query 1668 CTGGGTATGATCCGTTTTCAAGGAGATGGACCCGATCATCGAACTACTACAACGGGAAAA 1727
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1699 CAGGGTATGATCCGTTTTCAAGAAGATGGACCCGATCATCAAACTACTACAACGGGAAAA 1758
Query 1728 ACAAGGGGAAAGACGGAGAAGAGAACGAGACAGCGGTTGCAGCAGCAGTTGAGACCAATG 1787
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1759 ACAAGGGGAAAGATGGAGAAGAGAACGAGGCAGCGGTTGCAGCAGCGGTTGAGACCAATG 1818
Query 1788 GCGCAGATGCAGGAGCAGGTGTTGAAGCGACAGAAGCAGCTTTAGAAGCAGCTGCAGAGG 1847
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 GAGCAGATGCAGGAGCAGGTGTTGAAGCGACAGAAGCAGCTTTAGAAGCAGCTGCAGAGG 1878
Query 1848 CAGGAAAGCTAATAGACACAAGAGCTCCAATCGGTCAAGGAGCAGAACACAACCAGCTTC 1907
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1879 CAGGAAAGCTAATAGACACAAGAGCTCCAATAGGTCAAGGAGCAGAACACAATCAGCTTC 1938
Query 1908 ATAACTTTGAATTGTCGTTATCCCTAACGGCGTTACAGAAGTACGGAGGACCTCAAGGAG 1967
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1939 ATAACTTTGAATTGTCGTTATCGCTAACGGCTTTACAGAAGTACGGAGGACCTCAAGGAG 1998
Query 1968 TACAGAAAGCATTCATGGCGAGGAAGCAAGTGACCGAAGCAACAGTGGGATGCAGAGTCG 2027
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1999 TACAGAAAGCGTTCATGGCGAGGAAGCAACTGACCGAAGCAACTGTGGGATGCAGAGTCG 2058
Query 2028 CAGAGAACGATGGCAAGAGACATGGCCTTACTTTAACTGTTAGTGATTACAAGAGAAGGA 2087
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2059 CAGAGAACGATGGCAAGAGACATGGCCTTACGTTAACTGTTAGTGATTACAAGAGAAGGA 2118
Query 2088 GAGGTCTTCTCTGATTTCTG-G-AtttttttCAAGTCTCAGTGTTTCATTATCTTCTCAA 2145
||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||
Sbjct 2119 GAGGTCTTCTCTGATTTATTTGCATTTTTTTCAAGTCTCAGTGTTTCATTATCTTCTGAA 2178
Query 2146 AACTACTTCTTGGTTCTTCTTCTCTTCACATTTTTCTTTTGTACTCT-CAAAAT--GTTT 2202
|||| |||||||||||||||| |||||| || |||||||||||||| |||||| ||||
Sbjct 2179 AACTGCTTCTTGGTTCTTCTTTTCTTCATATCTTTCTTTTGTACTCCACAAAATATGTTT 2238
Query 2203 AGATCAATTTGttttttttttttCTTGAAATATTTCTGTACTCGTTTTTGTGTGAATTCT 2262
|||||| |||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 2239 AGATCAGTTTGTTTTTT------CTTGAAATATTTTTGTACTCGTTTTTGTGTGAACTCT 2292
Query 2263 CCTGATTAGTGTATGACTACATGAAATTAGAAAATTAAATCTTT 2306
|||||||||||||||||| |||||||||||||||| || |||||
Sbjct 2293 CCTGATTAGTGTATGACTGCATGAAATTAGAAAATCAAGTCTTT 2336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114457242600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5