BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475225
Length=2188
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation ... 3591 0.0
AT1G61000.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 111 2e-23
> AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474717-22477731 REVERSE LENGTH=2390
Length=2390
Score = 3591 bits (1944), Expect = 0.0
Identities = 2066/2126 (97%), Gaps = 4/2126 (0%)
Strand=Plus/Plus
Query 1 AATCGAGAAAGACGAAACATGGCTTCTTCTTCTGCTTCTCTGAAAAGAAGAGAGCAACCA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 54 AATCGAGAAAGACGAAACATGGCTTCTTCTTCTACTTCTCTGAAAAGAAGAGAGCAACCA 113
Query 61 ATTTCGCGAGATGGAGATCAACTTATAGTTACTCCTTTAGGTGCCGGAAGTGAAGTGGGT 120
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 114 ATTTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGT 173
Query 121 CGTTCCTGTGTTTACATGTCCTTCAGAGGCAAAAATATTCTGTTTGATTGTGGGATTCAT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 174 CGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGTTTGATTGTGGGATTCAT 233
Query 181 CCTGCGTACTCAGGCATGGCTGCGTTGCCTTACTTCGATGAGATTGATCCTTCTTCCATT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CCTGCGTACTCGGGCATGGCTGCGTTGCCTTACTTCGATGAGATTGATCCTTCTTCCATT 293
Query 241 GATGTCCTCTTGATTACTCACTTTCATATAGATCATGCAGCATCCCTACCTTATTTTCTG 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 294 GATGTCCTCTTGATTACTCACTTTCATATAGATCATGCAGCATCTCTACCTTATTTTCTG 353
Query 301 GAGAAGACGACATTCAATGGGCGGGTTTTCATGACACATGCAACAAAGGCCATCTACAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GAGAAGACGACATTCAATGGGCGGGTTTTCATGACACATGCAACAAAGGCCATCTACAAG 413
Query 361 CTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGAT 473
Query 421 GAACAAGATATCAACAAGTCCATGGACAAAATTGAGGTAATTGATTTCCATCAAACGGTT 480
|||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 474 GAACAAGACATCAACAAGTCTATGGACAAAATTGAGGTAATTGACTTCCATCAAACAGTT 533
Query 481 GAAGTAAATGGCATAAAGTTCTGGTGTTACACGGCAGGCCATGTTTTGGGTGCAGCCATG 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAAGTGAATGGCATAAAGTTCTGGTGTTACACGGCAGGCCATGTTTTGGGTGCAGCCATG 593
Query 541 TTTATGGTGGATATAGCTGGTGTCCGGATCCTCTACACAGGCGACTATTCCCGTGAGGAA 600
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 594 TTTATGGTGGATATAGCTGGTGTCCGAATCCTCTATACAGGCGACTATTCCCGTGAGGAA 653
Query 601 GACCGACATCTGAGAGCAGCTGAGCTTCCTCAATTCTCCCCTGACATATGCATCATTGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GACCGACATCTGAGAGCAGCTGAGCTTCCTCAATTCTCCCCTGACATATGCATCATTGAA 713
Query 661 TCCACTTCTGGTGTCCAGCTTCATCAATCTCGTCATATTCGTGAGAAACGCTTCACTGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCCACTTCTGGTGTCCAGCTTCATCAATCTCGTCATATTCGTGAGAAACGCTTCACTGAT 773
Query 721 GTAATCCATTCAACGGTTGCTCAGGGCGGACGTGTGCTGATCCCGGCTTTTGCCCTGGGC 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 774 GTAATCCATTCAACGGTTGCTCAGGGTGGACGTGTGCTGATCCCGGCTTTTGCACTGGGC 833
Query 781 CGTGCTCAGGAACTTCTCTTGATT-TTAGATGAATACTGGGCGAACCACCCAGATCTACA 839
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 834 CGTGCTCAGGAACTTCTCTTGATTCTT-GATGAATACTGGGCGAACCACCCAGATCTACA 892
Query 840 CAATATCCCAATCTACTATGCATCACCGCTCGCCAAAAAGTGTATGGCGGTTTACCAAAC 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 893 CAATATCCCAATCTACTATGCATCACCACTCGCCAAAAAGTGTATGGCGGTTTACCAAAC 952
Query 900 CTACATATTATCTATGAACGACAGAATCCGCAACCAGTTTGCAAATTCTAATCCGTTTGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTACATATTATCTATGAACGACAGAATCCGCAACCAGTTTGCAAATTCTAATCCGTTTGT 1012
Query 960 GTTCAAGCACATTTCTCCATTAAACAGCATCGATGATTTTAATGATGTCGGTCCATCTGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GTTCAAGCACATTTCTCCATTAAACAGCATCGATGATTTTAATGATGTCGGTCCATCTGT 1072
Query 1020 GGTTATGGCTACTCCTGGAGGTCTTCAAAGCGGTCTCTCAAGGCAACTCTTTGACAGCTG 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GGTAATGGCTACTCCTGGAGGTCTTCAAAGCGGTCTCTCAAGGCAACTCTTTGACAGCTG 1132
Query 1080 GTGTTCAGATAAGAAAAACGCTTGTATCATACCTGGTTATATGGTGGAAGGTACACTGGC 1139
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1133 GTGTTCAGATAAGAAGAATGCTTGTATCATACCAGGTTATATGGTGGAAGGTACACTGGC 1192
Query 1140 GAAGACGATAATTAATGAACCGAAGGAGGTGACTCTTATGAATGGTCTTACTGCTCCACT 1199
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1193 CAAGACGATAATTAATGAACCAAAGGAGGTGACTCTTATGAATGGTCTTACTGCTCCGCT 1252
Query 1200 CAACATGCAAGTGCACTATATCTCGTTCTCTGCTCACGCAGATTACGCGCAGACGAGCAC 1259
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1253 CAACATGCAAGTGCACTATATATCGTTCTCTGCTCATGCAGATTACGCGCAGACGAGCAC 1312
Query 1260 GTTCTTGAAAGAGCTCATGCCTCCTAACATCATCCTTGTTCATGGTGAAGCTAATGAGAT 1319
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1313 GTTCTTGAAAGAGCTCATGCCTCCTAACATCATCCTTGTTCACGGTGAAGCTAACGAGAT 1372
Query 1320 GATGAGGCTCAAACAGAAACTCTTCACGGAGTTTCCTGATGGAAACACAAAGATCATGAC 1379
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1373 GATGAGGCTCAAACAGAAGCTCTTAACAGAGTTTCCTGATGGAAACACAAAGATCATGAC 1432
Query 1380 CCCGAAGAACTGTGAGTCCGTTGAAATGTATTTTAATTCTGAGAAATTGGCGAAAACCAT 1439
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CCCGAAGAACTGTGAGTCAGTGGAAATGTATTTTAATTCTGAGAAATTGGCGAAAACCAT 1492
Query 1440 TGGGAGATTGGCGGGAAAA-ACACCCGATGTTGGCGATACAGTGAGCGGGATTCTGGTGA 1498
|||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1493 TGGGAGATTGGCGG-AAAAGACACCTGATGTTGGCGATACAGTAAGCGGGATTCTGGTGA 1551
Query 1499 AGAAAGGGTTCACTTATCAGATAATGGCACCTGATGAACTCCATGTTTTCTCACAGCTAT 1558
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1552 AGAAAGGGTTCACTTATCAGATAATGGCACCTGACGAACTCCATGTTTTCTCACAGCTAT 1611
Query 1559 CAACAGCAACTGTAACTCAGCGGATTACAATCCCGTTTGTAGGAGCTTTCGGTGTGATAA 1618
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1612 CAACAGCAACTGTAACTCAGCGAATTACAATCCCGTTTGTAGGAGCTTTTGGTGTGATAA 1671
Query 1619 AACATCGCCTCGAGAAGATTTTCGAGAGCGTGGAATCTTCAACAGATGAGGAATCGGGGC 1678
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1672 AACATCGCCTGGAGAAGATTTTCGAGAGCGTGGAATTTTCAACAGATGAGGAATCGGGGC 1731
Query 1679 TTCCAGCACTGAAAGTACATGAAAGAGTAACGGTGAAACAAGAGTCAGAGAAGCACATCT 1738
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TTCCAGCACTGAAAGTTCATGAAAGAGTAACGGTGAAACAAGAGTCAGAGAAGCACATCT 1791
Query 1739 CACTTCAGTGGTCATCAGATCCGATAAGTGACATGGTTTCAGACTCCATTGTAGCTCTGA 1798
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1792 CACTTCAGTGGTCATCAGATCCAATAAGTGACATGGTTTCAGACTCCATTGTAGCTCTGA 1851
Query 1799 TTCTCAACATTAGCCGCGAAGTCCCCAAGATCGTCGTGGAAGAAGAAGATGCTGTGAAAT 1858
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1852 TTCTCAACATCAGCCGAGAAGTCCCCAAGATCGTTATGGAAGAAGAAGATGCTGTGAAAT 1911
Query 1859 CCGAGGAAGAGAACGGGAAGAAAGTTGAGAAAGTGATATACGCACTTCTTGTGTCGCTCT 1918
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1912 CCGAGGAAGAGAACGGGAAGAAAGTTGAGAAAGTGATATACGCACTTCTTGTTTCGCTTT 1971
Query 1919 TCGGGGATGTGAAACTAGGCGAGAATGGGAAACTTGTGATCAGAGTCGATGGCAATGTCG 1978
||||||||||||||||||| || || |||||||| ||||| || ||||||||||||||||
Sbjct 1972 TCGGGGATGTGAAACTAGGAGAAAACGGGAAACTGGTGATTAGGGTCGATGGCAATGTCG 2031
Query 1979 CTCAGCTCGATAAAGAGAGTGGAGAGGTAGAGAGTGAGCATTCAGGTCTTAAGGAAAGAG 2038
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 CTCAGCTGGATAAAGAGAGTGGAGAGGTAGAGAGTGAGCATTCAGGTCTTAAGGAAAGAG 2091
Query 2039 TAAGAGTAGCTTTTGAGCGGATTCAGAGCGCTGTGAAACCAATCCCTCTCTCAGCTTCTT 2098
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 TGAGAGTAGCTTTTGAGCGGATTCAGAGCGCTGTGAAACCAATCCCTCTCTCAGCTTCTT 2151
Query 2099 AGTAGCTTTTTAAAGTCATCGTTGAG 2124
||||||||||||||||||||||||||
Sbjct 2152 AGTAGCTTTTTAAAGTCATCGTTGAG 2177
> AT1G61000.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED
IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore
protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits
to 29793 proteins in 2070 species: Archae - 902; Bacteria
- 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses
- 158; Other Eukaryotes - 12412 (source: NCBI BLink). | chr1:22470924-22474105
REVERSE LENGTH=1554
Length=1554
Score = 111 bits (60), Expect = 2e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2123 AGTTTCATGAATACACAGTGTCGTTTGATGCGTTTCTACCAAGCCTCTAAAGGACAAGGC 2182
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGTTTCATGAATACACGGTGTCGTTTGATGCGTTTCTACCAAGCCTCTAAAGGACAAGGA 1392
Query 2183 AGGTCT 2188
||||||
Sbjct 1393 AGGTCT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108533578290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5