BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475227
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60995.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3269 0.0
> AT1G60995.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to
170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa
- 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink). | chr1:22465640-22470716 REVERSE
LENGTH=2141
Length=2141
Score = 3269 bits (1770), Expect = 0.0
Identities = 2003/2113 (95%), Gaps = 25/2113 (1%)
Strand=Plus/Plus
Query 1 ATCTTCAATCCTCAATTGCTGTGGATTCGATAATCTCCCAGAACGAGAAGAAATCTACGA 60
||||||| || |||||| |||||||||||| ||||||||||||||||||| | | |
Sbjct 1 ATCTTCACTCTTCAATTTCTGTGGATTCGACAATCTCCCAGAACGAGAAG--A---A--A 53
Query 61 TCTACGATCCTCGCTACGGAGCAATTCAAATTCGATGACGACGTAGTTTTAACGAAGAAG 120
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 54 TCTACGATCCTCGCAACGGAGCAATTCAAATTCGATGACTACGTAGTGTTAACGAAGAAG 113
Query 121 ACGGAGAAGTGCATCGGAGAAT-CGCAATATGGATCCGGAGCAGACGTTTATTAGGGTTC 179
||| | ||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 114 ACGAAAAAGTGCATCGGAG-ATCCGAAATATGGATCCGGAGCAGACGTTTATTAGGGTTC 172
Query 180 AGGAGAGGTTTTCGCAGATCTTAACGCCAAGGATTAGAGGTTTCTTAGAGTATACTTACC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 AGGAGAGGTTTTCGCAGATCTTAACGCCAAGGATTAGAGGTTTCTTAGAGTATACTTACC 232
Query 240 TCTTCGTTGCCATCACTTTGTTCTGTATCCTCGTTGTTATGCACGCCAATTATGTTCAGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCTTCGTTGCCATCACTTTGTTCTGTATCCTCGTTGTTATGCACGCCAATTATGTTCAGC 292
Query 300 AGCCTGGTTGTTCAAGTGAGCTCACTGGAATTGAGTTAGCTGAAGCAGAGCTTATGCAAA 359
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 293 AGCCTGGTTGTTCAAGTGAGCTGACTGGAGTTGAGTTAGCTGAAGCAGAGCTTATGCAAA 352
Query 360 TCAAGATAACAAGTGCAGGGTTGTGGTCACGTAATGATGAAAGTATTGCTGCTGATGTTC 419
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 353 TCAAGATAACAAGTGCAGGGTTGTGGTCACGTAATGATGAAAGTACTGCTGCAGATGTTC 412
Query 420 CTCGAGTTGTAACTGCAACTAATAGTTTACAAGTGTCAAAGACTGATCAAGAAAGCTCTA 479
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 413 CTCGAGTTGTTGCTGCAACTGATAGTTTAGAAGTGTCAAAGACTGATCAAGAAAGCTCTA 472
Query 480 CCAGTGAAGAAAATGCCGATGATATATTTGTGAAAATTGATAAGGAAGAGCCCCGCACTA 539
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 473 CCAGTGAAGAAAATACCGATGATACATTTGTGAAAATTGATAAGGAAGAGCCCCGCAGTA 532
Query 540 GTTTCTCAGTGTCTGCAAAAGAGAATGTCAGAGCAGCTATTCTTCGCTTTCTCAAAAAGT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 533 GTTTCTCAGTGTCTGCAAAAGAGAATGTCAGAGCAGCTATTCTTCGCTTTCTTAAAAAGT 592
Query 600 GTTATAGGCGCATATCTTTCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTAAGAA 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 593 GTTACAGGCGCATATCTTTCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAA 652
Query 660 AAATATGGAACATCATTGGCATACCGTTGAATCTTGATGTGCCAAAATTGTTGCATGTAC 719
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 653 AAATATGGAACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGCATGTAC 712
Query 720 TTTATATGGACAAAGTCAACTACTATGCAGTTCAATGGCTTGAGAGTAAAACTCAAGAGT 779
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 713 TGTATATGGATAAAGTCAACTACTATGCAGTTCAGTGGCTTGAGAGTAAAACTCAAGAGT 772
Query 780 TTGAGCCAACATATCTATATACCATGGAAAAGGGTTACTTTTTGCTGCCTGATGAAGCAA 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 773 TTGAGCCAACATATCTATATACCATGGAAAAGGGTTACTTCTTGCTGCCTGATGAAGCAA 832
Query 840 AATCACGGCATAACATTCGCACTGCAAATGTCAGCATATCGGCACGGCATCCCTGCTTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AATCACGGCATAACATTCGCACTGCAAATGTCAGCATATCGGCACGGCATCCCTGCTTTG 892
Query 900 GCAACAGGTGGCAGCAACTTCTTATAAACAGAGTTGTAGGATATGATACTATTATAATGA 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 893 GCAACAGGTGGCAGCAACTTCTTATAAACAGAGTTGTTGGATATGATACTATTATAATGA 952
Query 960 ATAGCTTACAGAACTCTGCTGGTCAAGGTTATCTATACAACTTCCAGACAAGAGAGTTTT 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 953 ATAGCTTACAGAACTCTGCTGGTCAAGGTTATCTATACAACTACCAGACAAGAGAATTTT 1012
Query 1020 ACAATCTCAGTTACTCCCAAGAACTTCCTGAAGGTTCTGCGCAATTCGGAGATTACTTGG 1079
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1013 ACAATCTCAGTTACTCCCAAGAACTTCCTGACGGTTCTGCGCATTTCGGAGATTACTTGG 1072
Query 1080 TGACGAAATGTGGTGTGCTAATGATGTCACTTTTTGTGTTTTTCACAACCACAATGTCTG 1139
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TGACGAAATGTGGTGTCCTAATGATGTCACTTTTTGTGTTTTTCACAACCACAATGTCTG 1132
Query 1140 TGTCATTCACATTGCGAGAGACACAAACTCGCATGTTGAAGTTCACAGTGCAGCTTCAAC 1199
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1133 TATCATTCACATTGCGAGAGACACAAACTCGCATGTTGAAGTTTACAGTGCAGCTTCAAC 1192
Query 1200 ACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACATGTGATCGAATCGC 1259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1193 ACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGC 1252
Query 1260 TTGTCTTTGTACCAATTATGATTGGGATTCTGTTCTTCCTGTTTGAGTTTTACGACGATC 1319
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1253 TTGTCTTTGTACCGATTATGATTGGGATTTTGTTCTTCCTGTTTGAGTTTTACGACGATC 1312
Query 1320 AGCTATTGGCTTTCATGGTTCTGGTTCTTGTCTGGCTATGCGAATTATTCACCCTGATAA 1379
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1313 AGCTATTGGCTTTTATGGTTCTAGTTCTTGTCTGGCTTTGCGAATTATTCACCCTGATAA 1372
Query 1380 GTGTCAGGACACCGATATCGATGAAGTTCTTCCCACGTTTCTTCTTGTTGTACTTCTTAG 1439
||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 1373 GTGTCAGGACACCAATATCGATGAAGTTCTTCCCGCGTTTCTTCTTGCTGTACTTCTTGG 1432
Query 1440 TGTTCCATATTTATTTCTTCTCGTATGCATATGGCTTTTCTTATCTCGCCCTAATGACAA 1499
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1433 TGTTCCATATTTATTTCTTCTCATATGCATATGGTTTTTCTTATCTCGCCCTAATGACAA 1492
Query 1500 CCGCTGCATTCATGCAACACCTAATTCTATACTTCTGGAACCGATTTGAGGTACCAGCTC 1559
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 1493 CCGCTGCATTCATGCAACACTTAATTTTATACTTCTGGAACCGTTTTGAGGTACCAGCTC 1552
Query 1560 TTCAGAGATTCCTTCAAAGCCGACAGTCACACCTCCAGCAACACCCAGACTTTCACATCA 1619
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1553 TTCAGAGGTTCCTTCAAAGCCGACAGTCACACCTTCAGCAACACCCAGACTTTCACATCA 1612
Query 1620 CTTCCTCAACAATCCTAGCATCAACTCTTCACATCACAAGGCTGAACAGAACAACAAGAA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CTTCCTCAACAATCCTAGCATCAACTCTTCACATCACAAGGCTGAACAGAACAACAAGAA 1672
Query 1680 ACCGAAGTCCATCTGGTCCAAACAACACAACCCCAAACCAAAACACGGAAACAAGAT-TT 1738
|||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1673 ACCGAACTCCGTCTGGTCCTAACCACACAACCCCAAACCAAAACACGGAAACAAGATCTT 1732
Query 1739 CCAACAGCGGATGGAGGAGGTGTCGGGAATCCAACACAACATCAAGAGCAGCAAGAAGAG 1798
| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1733 TTA-CAGCGGATGGAGGAGGTGTCGGGAATCCGGCACAATATCAAGAGCAGCAAGAAGAG 1791
Query 1799 AATGCAGCAAACACCATTCCTGCAGAGCCTAACA-ACCAACAAGCGGGTGCGATGAGCTC 1857
|||| |||||||||| ||||||||||||||||| || ||||||| || || ||||||||
Sbjct 1792 AATGAAGCAAACACCGTTCCTGCAGAGCCTAACCCAC-AACAAGCAGGCGCAATGAGCTC 1850
Query 1858 GTTCAGTTCGATGCTACTATGGATTTTAGGCGGTGCTTCTTCAGAAGGACTTAACTCGTT 1917
|||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1851 GTTCAGCTCGATGCTTCTATGGATTTTAGGCGGGGCTTCGTCAGAAGGACTTAACTCGTT 1910
Query 1918 TCTTTCAATGTTTAGAGATGTGAGAGATGAAGAAGAAGCACAAGTGTTTGCAGATACT-G 1976
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1911 TCTTTCGATGTTTAGAGATGTGAGAGATGAAGATGAAGCACAAGTGTTTGCAGATACTAG 1970
Query 1977 CTCCACCTCAAAACCCGCATCATGATCCTCTTTCAGTTGATTAAA-tgtttgctgtatat 2035
|||||||||||||||||||||||||||||||||||||||||||| | ||| | | | |
Sbjct 1971 -TCCACCTCAAAACCCGCATCATGATCCTCTTTCAGTTGATTAAAGTTTTTTTTTTCTTT 2029
Query 2036 -tttg-t--at-tttc-t-tttt-ggcctctagttttttgttccttgtttgcttgtatAG 2087
|||| | || ||| | |||| ||||||| |||||| |||||||||||||||||||||
Sbjct 2030 GTTTGCTGTATATTTTGTATTTTTGGCCTCTGGTTTTT-GTTCCTTGTTTGCTTGTATAG 2088
Query 2088 TCACTGGCCAAAA 2100
|||||||||||||
Sbjct 2089 TCACTGGCCAAAA 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104115930330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5