BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475230
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60990.1 | Symbols: | Glycine cleavage T-protein family | c... 2145 0.0
AT1G60989.1 | Symbols: SCRL7 | SCR-like 7 | chr1:22462160-22462... 241 2e-62
> AT1G60990.1 | Symbols: | Glycine cleavage T-protein family |
chr1:22462640-22465424 REVERSE LENGTH=1438
Length=1438
Score = 2145 bits (1161), Expect = 0.0
Identities = 1295/1360 (95%), Gaps = 7/1360 (1%)
Strand=Plus/Plus
Query 1 AATTTTATATGAACCTTGTCAAGAATTGTACGGACATGGCGATGATGATGAGGATAGATT 60
||||||||||||||||| || ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 AATTTTATATGAACCTTCTCCAGAGTTGTAAGGACATGGCGATGATGATGAGGATAGATA 60
Query 61 GCGTGAGCCACATCACCAATACTGCTCTGCTTCCATGTCTCTACAACGGAACACTTCTTC 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 61 GCGTGAGCCACATCACCAATACTGCTCTACTTCCATGTCTCTACAACGGAACAGTTCTTC 120
Query 121 GCCGGCGCTCCCTCAGTCTCCGAAA-TAGTTGTTTCCGAGAACGAAAGCTTCAGCTCCGA 179
||||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 121 GCCGGCGCTCCCTCAGTCTCCGAAAGT-GTGGTTTCCGAGAACGAAAGTTTCAGCTCCGA 179
Query 180 TGCGTCTCTGCTTCTTCCGATTCGTTGCAGTTTGATTTCTCTCCGCCTCCAATCGATCAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TGCGTCTCTGCTTCTTCCGATTCGTTGCAGTTTGATTTCTCTCCGCCTCCAATTGATCAC 239
Query 240 GATTTTCTTGATACAATTAGTGTTGCTGGAGGTAAAGTTTCTGAAGATGGTATTGTTGAA 299
||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 240 GATTTTCTTGATACAATAAGTGTTTCTGGAGGTAAAGTTTCTGAAGATGGTGTTGTTGAG 299
Query 300 AGTTTTGATAACGACGATGAGGCTCTGGATGCATTTGATAATGGTGTTGTGGTTGTGGAT 359
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 300 AGTTTTGATAACGACGATGAGGCTTTGGATGCATTTGATAATGGAGTTGTGGTTGTGGAC 359
Query 360 CTCTCACATTTTGGGAGAATTCGAGTTAGTGGAGATGACCGTGCTCATTTCCTTCACAAC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 CTCTCACATTTTGGGAGAATTCGAGTTAGTGGAGATGACCGTGCTCATTTCCTTCATAAC 419
Query 420 CAAACCACTGCAAATTTTGAAAGCCTTAATGAAGGACAGGGATGTGACACTGTATTCGTT 479
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 420 CAAACCACTGCCAATTTTGAAAGCCTTTATGAAGGACAGGGATGTGACACTGTATTTGTT 479
Query 480 ACCCCAACAGCACGGACGATAGATATTGCACATGCCTGGATCATGAAAAATGCAATATTG 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACCCCAACAGCAAGGACGATAGATATTGCACATGCCTGGATCATGAAAAATGCAATATTG 539
Query 540 CTTACGGTTTCTCCAACGACATGCCAAAGCATAATTGAGATGCTGAACAAGTACAttttt 599
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 CTGACTGTTTCTCCAACGACATGCCAAAGCATAATTGAGATGCTCAACAAGTACATTTTC 599
Query 600 tttGCTGACAAGGTAGAGATCAAGGACATCACCAAGCAAACTTGCTTATTTGCTTTAGCA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGCTGACAAGGTAGAGATCAAGGACATCACCAAGCAAACTTGCTTATTTGCTTTAGCT 659
Query 660 GGACCCAAAAGCAACCAAATCATGTCTAAACTGAATCTGGGAGATCTTATTGGGCAGCCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGACCCAAAAGCAACCAAATCATGTCTAAACTGAATCTGGGAGATCTTATTGGGCAGCCA 719
Query 720 TATGGCAAGCATCAACATTATAGTTTTGATGGAATGCCAATAACAGTTGGGGTCGGAAGC 779
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATGGCAGGCATCAGCATTATAGTTTTGATGGAATGCCAATAACAGTTGGGGTCGGAAGT 779
Query 780 CTGATTTCAGATGAAGGCTTTACCATGTTAATGTCGCCAGGGGGTGCTGTTTCAGTTTGG 839
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 780 CTTATTTCAGATGAAGGCTTTACCATGTTAATGTCGCCAGGGGGTGCCGTTTCAGTCTGG 839
Query 840 AAGATCCTTTTAGCTGAAGGTGCCATTCCGATGGGTTCTGTAGCCTGGGAAAAACTTAGA 899
|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 840 AAGACCCTTTTAGCTGAAGGTGCTATTCCGATGGGTTCTGTAGCCTGGGAGAAACTTAGA 899
Query 900 ATCACTCAAGGAAGACCAGCACCTGAGAGAGAACTCAGCAAGGAATATAATGTTTTGGAG 959
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 900 ATCACTCAAGGAAGACCAGCACCTGAGAGAGAACTCAGCAAGGAATTTAATGTTCTGGAG 959
Query 960 GCGGGTCTATGGAACTCGATTTC-TCTGAACAAAGGATGTTATAAGGGACAGGAGACGAT 1018
||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 960 GCGGGCCTATGGAACTCGATTTCAT-TGAACAAAGGATGTTATAAGGGACAGGAGACAAT 1018
Query 1019 AGCAAGACTAATGACATATGATGGAATCAAGCAAAGGTTATGTGGACTTAATCTCTCTGC 1078
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 AGCAAGACTCATGACATATGATGGAATCAAGCAAAGATTATGTGGACTTAATCTCTCTGC 1078
Query 1079 ACCAGCGGAACCCGGCAGCCCCATCATAGTCGACGGGAAAAAGGTCGGGAAGCTAACGAG 1138
|||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 1079 ACCATCGGAACCCGGCAGCACCATCACAGTCGACGGGAAAAAGGTGGGGAAGCTAACGAG 1138
Query 1139 CTACACTAGGGGACGAGAA-GGGTCTGGTCATTTCGGGTTAGGCTACATCAAGAAACAAG 1197
||||||| ||||| | || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 CTACACTGGGGGAAAA-AACGGGTCTGGCCATTTCGGGTTAGGCTACATCAAGAAACAAG 1197
Query 1198 CAGCTTCAATTGGAAACACAGTGACTATAGGTGAAGATATTTCTGGGATAGTTTCTGAAG 1257
|||| |||||||| |||||||||||| |||||||||||||||| ||||| || |||||||
Sbjct 1198 CAGCCTCAATTGGCAACACAGTGACTGTAGGTGAAGATATTTCAGGGATTGTATCTGAAG 1257
Query 1258 TCCCTTATCTAGCGCGGCAACATCCTCCGTCAGCCAACTCGAGTTCTTGAGTAGAAGAAA 1317
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1258 TCCCTTATCTAGCGCGGCAACATCCTCCATCAGCCAACTCGAGTTCTTGAGTAGAAGAAA 1317
Query 1318 AAACGCAATGATGCAAGGAAACTACATAAGGACAACACAC 1357
|||||| ||||||||||||| |||||||||||||||||||
Sbjct 1318 AAACGCTATGATGCAAGGAA-CTACATAAGGACAACACAC 1356
> AT1G60989.1 | Symbols: SCRL7 | SCR-like 7 | chr1:22462160-22462721
FORWARD LENGTH=477
Length=477
Score = 241 bits (130), Expect = 2e-62
Identities = 139/143 (97%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 1448 ACCTTGTGAAAGGTGGATTGGAAGAAGGGAGAATAAGACAGAGGAAGCCAAGAAGATTGC 1507
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 142 ACCTTGCGAAAGGTGGATTGGAAGAAGGGAGAGTAAGACAGAGGAAGCCAAGAAGATTGC 83
Query 1508 AGCCAACTTCATATGtgtttctgtaagtttcttctctctttgtttttt-ctttgttcttt 1566
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 82 AGCCAACTTCATATGTGTTTCTGTAAGTTT-TTCTCTCTTTGTTTTTTTCTTTGTTCTTT 24
Query 1567 tATATATTATAATTGTTATGATT 1589
|||||||||||||||||||||||
Sbjct 23 TATATATTATAATTGTTATGATT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84889121595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5