BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475240 Length=569 Score E Sequences producing significant alignments: (Bits) Value AT1G60920.1 | Symbols: AGL55 | AGAMOUS-like 55 | chr1:22429692-... 785 0.0 AT1G60880.1 | Symbols: AGL56 | AGAMOUS-like-56 | chr1:22411575-... 460 5e-129 > AT1G60920.1 | Symbols: AGL55 | AGAMOUS-like 55 | chr1:22429692-22430267 REVERSE LENGTH=576 Length=576 Score = 785 bits (425), Expect = 0.0 Identities = 529/578 (92%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 1 ATGGGAGGCACAAAACGAAAGATAGAGATTAAGCCTATCGAAAACAAGAACATGAGATCA 60 ||||||||||||||| ||||||||||||| ||| |||||| | |||||| ||||| || Sbjct 1 ATGGGAGGCACAAAAAGAAAGATAGAGATGAAGAGAATCGAAGATAAGAACGTGAGAGCA 60 Query 61 GTTGCTTTTACAAAACGCAGAAA-CGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTCTCCT 119 |||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||||||||| Sbjct 61 GTTGCTTTCACAAAACGCA-AAAGCGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTCCT 119 Query 120 CTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATGCTTC 179 ||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||| Sbjct 120 CTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCTTC 179 Query 180 TTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 TTTCTACTCTTTCGGTCATTCCTCTGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239 Query 240 GCCT-C--CTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAGA 296 || | | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||||| Sbjct 240 GCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGAAGA 299 Query 297 CCAAGCCTTTGACAGATTGGAGAACGTTGACGAGTTGAAAGAGGCGA-TCGACGCGGTTT 355 ||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| Sbjct 300 CCAAGCCTTTGACAGATTGGAGAACGTCGACGAGTTGAAAGAGGC-AGTCGATGCGGTTT 358 Query 356 CGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 415 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 359 CGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 418 Query 416 ATGGAAGTTTAGTGAATT-ATCAGGAGGA-G-G-AGGTTCTTCAGCTTCGCAACGAAGAC 471 ||||||||||||||| || |||||||||| | | |||||||||||||| || || ||||| Sbjct 419 ATGGAAGTTTAGTGA-TTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAAGAC 477 Query 472 ACAAATCAAATTACCAAATTCGAAGGTGAAACTTCTGCTTCTGCAAGTTTGTTAAAGAAC 531 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 478 ACAAATCAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAAGAAC 537 Query 532 TTGGAGGATAATCTACACATCGATGATTGTTTTTACTG 569 | | ||||||||||||||| |||||| ||| |||||| Sbjct 538 GTAGTGGATAATCTACACATTGATGATCGTTATTACTG 575 > AT1G60880.1 | Symbols: AGL56 | AGAMOUS-like-56 | chr1:22411575-22412180 FORWARD LENGTH=606 Length=606 Score = 460 bits (249), Expect = 5e-129 Identities = 483/591 (82%), Gaps = 35/591 (6%) Strand=Plus/Plus Query 1 ATGGGAGGC-ACAAAACGAAAGATAGAGATTAAGCCTATCGA-AAACAAGAACATG--AG 56 ||||||||| | ||||| |||||| ||||||||| ||| | |||| | ||| | | Sbjct 1 ATGGGAGGCAAAAAAAC-AAAGATTGAGATTAAGAAGATC-ATAAAC-A-AACCCGCAAA 56 Query 57 ATCAGTTGCTTTTACAAAACGCA-GAAACGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTC 115 | | |||||||| |||||||||| | || ||||||||||||||||||||| |||| |||| Sbjct 57 AACGGTTGCTTTCACAAAACGCAGGGAA-GGTCTCTTCCGCAAAGCTTCACAGCTTTGTC 115 Query 116 TCCTCTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATG 175 |||||||||| | |||||||||||||||||| ||||| | ||||||| ||||| | Sbjct 116 TCCTCTCTCCAGCCACTCAAATCGCAATCTTAGCGGCTCCTATGACTTCCAAATCTCACG 175 Query 176 CTTCTTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACA 235 |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| | Sbjct 176 CTTCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAACGTTGTCTCCTCTCTGCTTTATG 235 Query 236 ATCAGCCTCCTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAG 295 | || ||||||||| || || ||||||| ||||| |||||| |||||||||||||||||| Sbjct 236 ACCATCCTCCTCTTACGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAG 295 Query 296 ACCAAGCCTTT-GACAG-ATTGGAGAACGTTGACGAGTTGAAAGAGGCGATCGACGCGGT 353 || || | ||| ||| | || |||||||||||| ||||| ||||||||| |||| || || Sbjct 296 ACAAA-CGTTTTGAC-GTATCGGAGAACGTTGAGGAGTTAAAAGAGGCGGTCGATGCTGT 353 Query 354 TTCGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAG 413 |||||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| Sbjct 354 TTCGAGGATGTTGAACAATGTGAGATGCCGATTAAATGATGCCGTGAAGAGTACTCAAAG 413 Query 414 AGATGGAAGTTTAGTGAAT-T--ATCA---GGAGGAGGAGGTTCTTCAG-CTTCGCAACG 466 ||||||| |||||| || | | |||| ||||||||| ||||||||| || ||||||| Sbjct 414 AGATGGAGGTTTAGAGATTCTTCATCATCAGGAGGAGGAAGTTCTTCAGACT-CGCAACG 472 Query 467 A--AGACACA-A--A-TCAAATT-ACCAAATTCGAAGGTG---AAACTTCTGCTTCTGCA 516 | ||||| | | | ||||| | || || || ||||| | ||||||||| ||||||| Sbjct 473 ACGAGACAAAGACGAATCAAACTCACGAATTT-GAAGGCGGCGAAACTTCTGGTTCTGCA 531 Query 517 AGTTTGTTAAAGAACTTGGAGGATAATCTACACATCGATGATTG-TTTTTA 566 |||| |||| ||||| ||| |||| ||| ||| | |||||| | |||||| Sbjct 532 AGTTGGTTAGAGAACGAGGATGATATTCTTCACTTTGATGAT-GATTTTTA 581 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27327375968 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5