BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475240
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60920.1 | Symbols: AGL55 | AGAMOUS-like 55 | chr1:22429692-... 785 0.0
AT1G60880.1 | Symbols: AGL56 | AGAMOUS-like-56 | chr1:22411575-... 460 5e-129
> AT1G60920.1 | Symbols: AGL55 | AGAMOUS-like 55 | chr1:22429692-22430267
REVERSE LENGTH=576
Length=576
Score = 785 bits (425), Expect = 0.0
Identities = 529/578 (92%), Gaps = 12/578 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGGCACAAAACGAAAGATAGAGATTAAGCCTATCGAAAACAAGAACATGAGATCA 60
||||||||||||||| ||||||||||||| ||| |||||| | |||||| ||||| ||
Sbjct 1 ATGGGAGGCACAAAAAGAAAGATAGAGATGAAGAGAATCGAAGATAAGAACGTGAGAGCA 60
Query 61 GTTGCTTTTACAAAACGCAGAAA-CGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTCTCCT 119
|||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 61 GTTGCTTTCACAAAACGCA-AAAGCGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTCCT 119
Query 120 CTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATGCTTC 179
||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 120 CTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCTTC 179
Query 180 TTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCTACTCTTTCGGTCATTCCTCTGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239
Query 240 GCCT-C--CTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAGA 296
|| | | ||||||| ||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 240 GCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGAAGA 299
Query 297 CCAAGCCTTTGACAGATTGGAGAACGTTGACGAGTTGAAAGAGGCGA-TCGACGCGGTTT 355
||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||
Sbjct 300 CCAAGCCTTTGACAGATTGGAGAACGTCGACGAGTTGAAAGAGGC-AGTCGATGCGGTTT 358
Query 356 CGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 CGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 418
Query 416 ATGGAAGTTTAGTGAATT-ATCAGGAGGA-G-G-AGGTTCTTCAGCTTCGCAACGAAGAC 471
||||||||||||||| || |||||||||| | | |||||||||||||| || || |||||
Sbjct 419 ATGGAAGTTTAGTGA-TTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAAGAC 477
Query 472 ACAAATCAAATTACCAAATTCGAAGGTGAAACTTCTGCTTCTGCAAGTTTGTTAAAGAAC 531
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 ACAAATCAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAAGAAC 537
Query 532 TTGGAGGATAATCTACACATCGATGATTGTTTTTACTG 569
| | ||||||||||||||| |||||| ||| ||||||
Sbjct 538 GTAGTGGATAATCTACACATTGATGATCGTTATTACTG 575
> AT1G60880.1 | Symbols: AGL56 | AGAMOUS-like-56 | chr1:22411575-22412180
FORWARD LENGTH=606
Length=606
Score = 460 bits (249), Expect = 5e-129
Identities = 483/591 (82%), Gaps = 35/591 (6%)
Strand=Plus/Plus
Query 1 ATGGGAGGC-ACAAAACGAAAGATAGAGATTAAGCCTATCGA-AAACAAGAACATG--AG 56
||||||||| | ||||| |||||| ||||||||| ||| | |||| | ||| | |
Sbjct 1 ATGGGAGGCAAAAAAAC-AAAGATTGAGATTAAGAAGATC-ATAAAC-A-AACCCGCAAA 56
Query 57 ATCAGTTGCTTTTACAAAACGCA-GAAACGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTC 115
| | |||||||| |||||||||| | || ||||||||||||||||||||| |||| ||||
Sbjct 57 AACGGTTGCTTTCACAAAACGCAGGGAA-GGTCTCTTCCGCAAAGCTTCACAGCTTTGTC 115
Query 116 TCCTCTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATG 175
|||||||||| | |||||||||||||||||| ||||| | ||||||| ||||| |
Sbjct 116 TCCTCTCTCCAGCCACTCAAATCGCAATCTTAGCGGCTCCTATGACTTCCAAATCTCACG 175
Query 176 CTTCTTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACA 235
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |
Sbjct 176 CTTCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAACGTTGTCTCCTCTCTGCTTTATG 235
Query 236 ATCAGCCTCCTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAG 295
| || ||||||||| || || ||||||| ||||| |||||| ||||||||||||||||||
Sbjct 236 ACCATCCTCCTCTTACGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAG 295
Query 296 ACCAAGCCTTT-GACAG-ATTGGAGAACGTTGACGAGTTGAAAGAGGCGATCGACGCGGT 353
|| || | ||| ||| | || |||||||||||| ||||| ||||||||| |||| || ||
Sbjct 296 ACAAA-CGTTTTGAC-GTATCGGAGAACGTTGAGGAGTTAAAAGAGGCGGTCGATGCTGT 353
Query 354 TTCGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAG 413
|||||||||||||||||||||||| | |||||| |||||||||||||||| | ||||||
Sbjct 354 TTCGAGGATGTTGAACAATGTGAGATGCCGATTAAATGATGCCGTGAAGAGTACTCAAAG 413
Query 414 AGATGGAAGTTTAGTGAAT-T--ATCA---GGAGGAGGAGGTTCTTCAG-CTTCGCAACG 466
||||||| |||||| || | | |||| ||||||||| ||||||||| || |||||||
Sbjct 414 AGATGGAGGTTTAGAGATTCTTCATCATCAGGAGGAGGAAGTTCTTCAGACT-CGCAACG 472
Query 467 A--AGACACA-A--A-TCAAATT-ACCAAATTCGAAGGTG---AAACTTCTGCTTCTGCA 516
| ||||| | | | ||||| | || || || ||||| | ||||||||| |||||||
Sbjct 473 ACGAGACAAAGACGAATCAAACTCACGAATTT-GAAGGCGGCGAAACTTCTGGTTCTGCA 531
Query 517 AGTTTGTTAAAGAACTTGGAGGATAATCTACACATCGATGATTG-TTTTTA 566
|||| |||| ||||| ||| |||| ||| ||| | |||||| | ||||||
Sbjct 532 AGTTGGTTAGAGAACGAGGATGATATTCTTCACTTTGATGAT-GATTTTTA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27327375968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5