BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475241 Length=2039 Score E Sequences producing significant alignments: (Bits) Value AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large sub... 2758 0.0 AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 538 8e-152 > AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22423909-22428022 FORWARD LENGTH=2085 Length=2085 Score = 2758 bits (1493), Expect = 0.0 Identities = 1905/2088 (91%), Gaps = 91/2088 (4%) Strand=Plus/Plus Query 1 TTTAATTCATCCTCCATTGAAAATCCCTAGGGTTTTCTTCCATACACAATCAGACT---C 57 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct 7 TTTAATTCATCCTCCATT-AGAATCCCTAGGGTTTTCTTCCATACACAATCAGACTCAAC 65 Query 58 -----G-ACCAACCGGAGAAGAGATTC-CGAGAGGATGATGACTTACGAAGGTAACGGAG 110 | ||||| ||||||||||| || | || ||||||||| ||||||||| ||||||| Sbjct 66 GATAAGTACCAATCGGAGAAGAGA-TCACAAGTGGATGATGAGTTACGAAGGCAACGGAG 124 Query 111 ATGGCGTCGCTATCTCCACCGAAAACCACAGCGAAAACTACATATCTCTAGAGAGCTCGC 170 |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 125 ATGGTGTCGCTATCTCCACCGAAAACCACAACGAGAACTACATATCTCTAGAGAGCTCGC 184 Query 171 CTTTTC----AGTC-CCTTGGTGGCGAGGATGGTCATGAAGACTCCAAGTCTCGAGAATC 225 |||||| || | || || |||| || ||||| | || || | || || Sbjct 185 CTTTTCATGAAGACTCC-AAGTCTCGAGAAT-CTCATG-A-TCT-TAA--AAAG-GATTC 236 Query 226 -TC-ATGATC-TTGA-AAAGGATTC-TTCGAAAAT-CA-GTGAGAAAGACAGAGAC-AA- 276 || | ||| ||| ||| || | | |||||| | |||| |||||| || || || Sbjct 237 TTCGAAAATCAGTGAGAAA-GA--CAAT-GAAAATGGACGTGATAAAGACGGAAACAAAG 292 Query 277 A----GATCGTGAGAAGGATCGTgatagggagaagagcagagacagagatagggagaaaa 332 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 ATCGTGATCGTGAGAAGGATCGTGATAGGGAGAAGAGCAGAGACAGAGATAGGGAGAAAA 352 Query 333 gc------agagatagggatagggagagaagtaaagatagggaACGAGATCGCCATCATA 386 || |||||||||||||||||||||||||| |||||| ||||||| || ||||||| Sbjct 353 GCAGAGATAGAGATAGGGATAGGGAGAGAAGTAAGGATAGGCAACGAGACCGTCATCATA 412 Query 387 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGTGAGAAAAGAGAACGTGAGAGAGATG 446 ||||||||||||||||||||||||||||||||||| ||||| | ||||||| Sbjct 413 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGT-------GAGAA----A-AGAGATG 460 Query 447 ATTTGGATGATGATCATCATCATCA-CAG--AAG-TCGTGACAGGAGGAGGTCTCGCGAT 502 ||||||||||||||||||||| || || || ||||| |||||||||||||||||| Sbjct 461 ATTTGGATGATGATCATCATC-GCAGAAGTCGAGACCGTGATAGGAGGAGGTCTCGCGAT 519 Query 503 CGAGACAGAGAGGTCAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 562 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 CGAGACAGAGAGGTGAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 579 Query 563 CGCAGGTCAAGGTCAGAACATAGGCATAAGTCTGAACATAGATCACGTTCACGCTCACAG 622 || |||||||||||||||||||| ||||||||||||||||| | |||||||||| | Sbjct 580 CGTAGGTCAAGGTCAGAACATAGACATAAGTCTGAACATAG---A---TCACGCTCACGG 633 Query 623 TCGCGATCAAGGTCAAAAAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 682 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 634 TCGCGATCAAGGTCAAAGAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 693 Query 683 TTAGCTGCTACTGCTGTTGCTGCGGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 742 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 694 TTAGCTGCTACTGCTGTTGCTGCAGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 753 Query 743 ATTCCAGGGATGTTCCCAAACATGTTCCCAATGGTCCCTGGTCAGCAACTGGGTGCGCTT 802 ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 754 ATTCCAGGGATGTTCTCAAACATGTTTCCAATGGTCCCTGGTCAGCAACTAGGTGCGCTT 813 Query 803 CCTGTACTGCCAGTTCAGGCAATGACTCAGCAGGCAACTAGGCATGCTCGGCGGGTCTAT 862 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 814 CCTGTACTGCCAGTTCAGGCAATGACTCAACAGGCAACTAGGCATGCTCGGCGAGTCTAT 873 Query 863 GTTGGTGGCCTTCCACCAACTGCAAATGAACAGTCGGTGGCAACGTTCTTTAGCCAAGTG 922 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 874 GTTGGTGGCCTTCCACCAACTGCTAATGAACAGTCGGTGTCAACGTTCTTTAGCCAAGTG 933 Query 923 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 993 Query 983 AACCACGAAAAGAAGTTCGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1042 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 994 AACCACGAAAAGAAGTTTGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1053 Query 1043 ATGGCATTAGATGGCATTATATTAGAGGGAGTTCCTGTAAAGGTAAGGAGGCCAACTGAC 1102 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1054 ATGGCATTAGACGGCATTATATTAGAGGGAGTTCCTGTAAAGGTGAGGAGGCCAACTGAC 1113 Query 1103 TATAACCCGTCCCTTGCTGCAACTCTTGGTCCGAGTCAGCCTAACCCCAACCTCAACTT- 1161 ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1114 TATAACCCGTCTCTTGCTGCAACTCTTGGTCCGAGCCAGCCTAATCCCAACCTCAACTTA 1173 Query 1162 GGCGGCTGTTGGATTGTCTTCGGGGTCTACTGGTGGGCTTGAGGGTCCCGATCGCATTTT 1221 || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1174 GG-GGCTGTTGGATTGTCTTCAGGGTCTACTGGTGGGCTTGAGGGTCCCGACCGCATTTT 1232 Query 1222 TGTGGGCGGGCTTCCCTATTACTTCACAGAGGTTCAAATCAGGGAGCTCTTGGAGTCTTT 1281 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1233 TGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGATCAGGGAGCTCTTGGAGTCTTT 1292 Query 1282 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAAACTGGAAATTCGAAGGGATA 1341 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1293 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAGACTGGAAATTCGAAGGGATA 1352 Query 1342 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACTGATATTGCATGTGCCGCTCTAAACGG 1401 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1353 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATATTGCATGTGCCGCTCTAAACGG 1412 Query 1402 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGTGATTCAACC 1461 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1413 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGCAATTCAACC 1472 Query 1462 TAAACCCGAGCAAGAAGAAGTCTTACTTCATGCCCAACAACAGATTGCTTTGCAGAGGCT 1521 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1473 TAAACCCGAGCAAGAAGAAGTCTTACTTTATGCCCAACAACAGATTGCTTTGCAGAGGCT 1532 Query 1522 TATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1581 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1533 TATGTTCCAACCAGGAGGTACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1592 Query 1582 TGATGATGTTAGAGACGATGAAGAATATGCAGACATAATGGAGGACATGAGACAAGAAGG 1641 ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1593 TGATGATCTTAGAGACGATGAAGAATATGCAGAGATAATGGAGGACATGCGACAAGAAGG 1652 Query 1642 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCAAGGCCCAATCCAGATCATGATCC 1701 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 1653 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCC 1712 Query 1702 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1713 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1772 Query 1762 CAGATCGGGGATGAACGGAAGAAAATTTGGAGGAAACCAAGTGGTGGCTGTGTATTACCC 1821 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1773 CAGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCC 1832 Query 1822 TGAAGACAAGTATTTGCAAGGCGACTACGAAGACTGAGCTAGCTATCGTTCT-CTTCTTA 1880 |||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||| Sbjct 1833 CGAAGACAAGTATGCCCAAGGCGACTACGAAGACTGAGCTATCTATCGT-CTTCTTCTTA 1891 Query 1881 AGCTTT-AGTGTGGACCTCTTAGCAACAAGTTTGGATCtttttgttaatttta--ttttt 1937 |||||| ||| |||| ||||||||||||||||||| ||||||| | | ||||| ||||| Sbjct 1892 AGCTTTTAGTTTGGATCTCTTAGCAACAAGTTTGGTTCTTTTT-T-ATTTTTAAGTTTTT 1949 Query 1938 tACATGTT-A-TGGTCACTCTACTAAATGGAGATATTTGGTTCTCTAGAATCTGACTGCA 1995 |||||||| | | || |||||||||||||||| ||||| | || |||||||||||||| Sbjct 1950 TACATGTTTAGTTCTCTCTCTACTAAATGGAGAAATTTG-T-CT--AGAATCTGACTGCA 2005 Query 1996 ATAGTAGTTTGTCCAGGCACAATCAA----GGTGTGTGTTGGTAATAG 2039 |||||| || |||||||||||||||| |||||||||||||||||| Sbjct 2006 ATAGTACTT-GTCCAGGCACAATCAATTAAGGTGTGTGTTGGTAATAG 2052 > AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22395058-22395603 REVERSE LENGTH=336 Length=336 Score = 538 bits (291), Expect = 8e-152 Identities = 321/336 (96%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 1523 ATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGCT 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGCT 60 Query 1583 GATGATGTTAGAGACGATGAAGAATATGCAGACATAATGGAGGACATGAGACAAGAAGGT 1642 ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GATGACCTTAGAGACGATGCAGAATATGCAGACATAATGGAGGACATGAGCCAAGAAGGT 120 Query 1643 GGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCAAGGCCCAATCCAGATCATGATCCA 1702 || |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 121 GGTAAATTCGGTAACTTGGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCCA 180 Query 1703 ACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGCC 1762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGCC 240 Query 1763 AGATCGGGGATGAACGGAAGAAAATTTGGAGGAAACCAAGTGGTGGCTGTGTATTACCCT 1822 |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 241 AGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCCC 300 Query 1823 GAAGACAAGTATTTGCAAGGCGACTACGAAGACTGA 1858 |||||||||||| ||||||||||||||||||||| Sbjct 301 GAAGACAAGTATGCCCAAGGCGACTACGAAGACTGA 336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101053697085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5