BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475241
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large sub... 2758 0.0
AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 538 8e-152
> AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subunit,
splicing factor | chr1:22423909-22428022 FORWARD LENGTH=2085
Length=2085
Score = 2758 bits (1493), Expect = 0.0
Identities = 1905/2088 (91%), Gaps = 91/2088 (4%)
Strand=Plus/Plus
Query 1 TTTAATTCATCCTCCATTGAAAATCCCTAGGGTTTTCTTCCATACACAATCAGACT---C 57
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 7 TTTAATTCATCCTCCATT-AGAATCCCTAGGGTTTTCTTCCATACACAATCAGACTCAAC 65
Query 58 -----G-ACCAACCGGAGAAGAGATTC-CGAGAGGATGATGACTTACGAAGGTAACGGAG 110
| ||||| ||||||||||| || | || ||||||||| ||||||||| |||||||
Sbjct 66 GATAAGTACCAATCGGAGAAGAGA-TCACAAGTGGATGATGAGTTACGAAGGCAACGGAG 124
Query 111 ATGGCGTCGCTATCTCCACCGAAAACCACAGCGAAAACTACATATCTCTAGAGAGCTCGC 170
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 125 ATGGTGTCGCTATCTCCACCGAAAACCACAACGAGAACTACATATCTCTAGAGAGCTCGC 184
Query 171 CTTTTC----AGTC-CCTTGGTGGCGAGGATGGTCATGAAGACTCCAAGTCTCGAGAATC 225
|||||| || | || || |||| || ||||| | || || | || ||
Sbjct 185 CTTTTCATGAAGACTCC-AAGTCTCGAGAAT-CTCATG-A-TCT-TAA--AAAG-GATTC 236
Query 226 -TC-ATGATC-TTGA-AAAGGATTC-TTCGAAAAT-CA-GTGAGAAAGACAGAGAC-AA- 276
|| | ||| ||| ||| || | | |||||| | |||| |||||| || || ||
Sbjct 237 TTCGAAAATCAGTGAGAAA-GA--CAAT-GAAAATGGACGTGATAAAGACGGAAACAAAG 292
Query 277 A----GATCGTGAGAAGGATCGTgatagggagaagagcagagacagagatagggagaaaa 332
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATCGTGATCGTGAGAAGGATCGTGATAGGGAGAAGAGCAGAGACAGAGATAGGGAGAAAA 352
Query 333 gc------agagatagggatagggagagaagtaaagatagggaACGAGATCGCCATCATA 386
|| |||||||||||||||||||||||||| |||||| ||||||| || |||||||
Sbjct 353 GCAGAGATAGAGATAGGGATAGGGAGAGAAGTAAGGATAGGCAACGAGACCGTCATCATA 412
Query 387 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGTGAGAAAAGAGAACGTGAGAGAGATG 446
||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 413 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGT-------GAGAA----A-AGAGATG 460
Query 447 ATTTGGATGATGATCATCATCATCA-CAG--AAG-TCGTGACAGGAGGAGGTCTCGCGAT 502
||||||||||||||||||||| || || || ||||| ||||||||||||||||||
Sbjct 461 ATTTGGATGATGATCATCATC-GCAGAAGTCGAGACCGTGATAGGAGGAGGTCTCGCGAT 519
Query 503 CGAGACAGAGAGGTCAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 562
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CGAGACAGAGAGGTGAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 579
Query 563 CGCAGGTCAAGGTCAGAACATAGGCATAAGTCTGAACATAGATCACGTTCACGCTCACAG 622
|| |||||||||||||||||||| ||||||||||||||||| | |||||||||| |
Sbjct 580 CGTAGGTCAAGGTCAGAACATAGACATAAGTCTGAACATAG---A---TCACGCTCACGG 633
Query 623 TCGCGATCAAGGTCAAAAAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 682
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TCGCGATCAAGGTCAAAGAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 693
Query 683 TTAGCTGCTACTGCTGTTGCTGCGGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 742
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 694 TTAGCTGCTACTGCTGTTGCTGCAGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 753
Query 743 ATTCCAGGGATGTTCCCAAACATGTTCCCAATGGTCCCTGGTCAGCAACTGGGTGCGCTT 802
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 754 ATTCCAGGGATGTTCTCAAACATGTTTCCAATGGTCCCTGGTCAGCAACTAGGTGCGCTT 813
Query 803 CCTGTACTGCCAGTTCAGGCAATGACTCAGCAGGCAACTAGGCATGCTCGGCGGGTCTAT 862
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 814 CCTGTACTGCCAGTTCAGGCAATGACTCAACAGGCAACTAGGCATGCTCGGCGAGTCTAT 873
Query 863 GTTGGTGGCCTTCCACCAACTGCAAATGAACAGTCGGTGGCAACGTTCTTTAGCCAAGTG 922
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 874 GTTGGTGGCCTTCCACCAACTGCTAATGAACAGTCGGTGTCAACGTTCTTTAGCCAAGTG 933
Query 923 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 993
Query 983 AACCACGAAAAGAAGTTCGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1042
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AACCACGAAAAGAAGTTTGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1053
Query 1043 ATGGCATTAGATGGCATTATATTAGAGGGAGTTCCTGTAAAGGTAAGGAGGCCAACTGAC 1102
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1054 ATGGCATTAGACGGCATTATATTAGAGGGAGTTCCTGTAAAGGTGAGGAGGCCAACTGAC 1113
Query 1103 TATAACCCGTCCCTTGCTGCAACTCTTGGTCCGAGTCAGCCTAACCCCAACCTCAACTT- 1161
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1114 TATAACCCGTCTCTTGCTGCAACTCTTGGTCCGAGCCAGCCTAATCCCAACCTCAACTTA 1173
Query 1162 GGCGGCTGTTGGATTGTCTTCGGGGTCTACTGGTGGGCTTGAGGGTCCCGATCGCATTTT 1221
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1174 GG-GGCTGTTGGATTGTCTTCAGGGTCTACTGGTGGGCTTGAGGGTCCCGACCGCATTTT 1232
Query 1222 TGTGGGCGGGCTTCCCTATTACTTCACAGAGGTTCAAATCAGGGAGCTCTTGGAGTCTTT 1281
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1233 TGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGATCAGGGAGCTCTTGGAGTCTTT 1292
Query 1282 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAAACTGGAAATTCGAAGGGATA 1341
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1293 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAGACTGGAAATTCGAAGGGATA 1352
Query 1342 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACTGATATTGCATGTGCCGCTCTAAACGG 1401
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1353 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATATTGCATGTGCCGCTCTAAACGG 1412
Query 1402 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGTGATTCAACC 1461
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1413 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGCAATTCAACC 1472
Query 1462 TAAACCCGAGCAAGAAGAAGTCTTACTTCATGCCCAACAACAGATTGCTTTGCAGAGGCT 1521
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1473 TAAACCCGAGCAAGAAGAAGTCTTACTTTATGCCCAACAACAGATTGCTTTGCAGAGGCT 1532
Query 1522 TATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1581
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TATGTTCCAACCAGGAGGTACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1592
Query 1582 TGATGATGTTAGAGACGATGAAGAATATGCAGACATAATGGAGGACATGAGACAAGAAGG 1641
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1593 TGATGATCTTAGAGACGATGAAGAATATGCAGAGATAATGGAGGACATGCGACAAGAAGG 1652
Query 1642 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCAAGGCCCAATCCAGATCATGATCC 1701
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1653 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCC 1712
Query 1702 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1772
Query 1762 CAGATCGGGGATGAACGGAAGAAAATTTGGAGGAAACCAAGTGGTGGCTGTGTATTACCC 1821
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1773 CAGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCC 1832
Query 1822 TGAAGACAAGTATTTGCAAGGCGACTACGAAGACTGAGCTAGCTATCGTTCT-CTTCTTA 1880
|||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 1833 CGAAGACAAGTATGCCCAAGGCGACTACGAAGACTGAGCTATCTATCGT-CTTCTTCTTA 1891
Query 1881 AGCTTT-AGTGTGGACCTCTTAGCAACAAGTTTGGATCtttttgttaatttta--ttttt 1937
|||||| ||| |||| ||||||||||||||||||| ||||||| | | ||||| |||||
Sbjct 1892 AGCTTTTAGTTTGGATCTCTTAGCAACAAGTTTGGTTCTTTTT-T-ATTTTTAAGTTTTT 1949
Query 1938 tACATGTT-A-TGGTCACTCTACTAAATGGAGATATTTGGTTCTCTAGAATCTGACTGCA 1995
|||||||| | | || |||||||||||||||| ||||| | || ||||||||||||||
Sbjct 1950 TACATGTTTAGTTCTCTCTCTACTAAATGGAGAAATTTG-T-CT--AGAATCTGACTGCA 2005
Query 1996 ATAGTAGTTTGTCCAGGCACAATCAA----GGTGTGTGTTGGTAATAG 2039
|||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 2006 ATAGTACTT-GTCCAGGCACAATCAATTAAGGTGTGTGTTGGTAATAG 2052
> AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22395058-22395603 REVERSE LENGTH=336
Length=336
Score = 538 bits (291), Expect = 8e-152
Identities = 321/336 (96%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 1523 ATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGCT 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGCT 60
Query 1583 GATGATGTTAGAGACGATGAAGAATATGCAGACATAATGGAGGACATGAGACAAGAAGGT 1642
||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GATGACCTTAGAGACGATGCAGAATATGCAGACATAATGGAGGACATGAGCCAAGAAGGT 120
Query 1643 GGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCAAGGCCCAATCCAGATCATGATCCA 1702
|| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 121 GGTAAATTCGGTAACTTGGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCCA 180
Query 1703 ACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGCC 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGCC 240
Query 1763 AGATCGGGGATGAACGGAAGAAAATTTGGAGGAAACCAAGTGGTGGCTGTGTATTACCCT 1822
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 AGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCCC 300
Query 1823 GAAGACAAGTATTTGCAAGGCGACTACGAAGACTGA 1858
|||||||||||| |||||||||||||||||||||
Sbjct 301 GAAGACAAGTATGCCCAAGGCGACTACGAAGACTGA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053697085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5