BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475244
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60880.1 | Symbols: AGL56 | AGAMOUS-like-56 | chr1:22411575-... 728 0.0
AT1G60920.1 | Symbols: AGL55 | AGAMOUS-like 55 | chr1:22429692-... 488 2e-137
> AT1G60880.1 | Symbols: AGL56 | AGAMOUS-like-56 | chr1:22411575-22412180
FORWARD LENGTH=606
Length=606
Score = 728 bits (394), Expect = 0.0
Identities = 519/576 (90%), Gaps = 21/576 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGGC-AAAAAACGTAAGATAAAGATTAA-AAGAATCGA-AAACAAAGTCGCAAGA 57
||||||||| ||||||| ||||| ||||||| ||| ||| | ||||||| ||||| |
Sbjct 1 ATGGGAGGCAAAAAAAC-AAAGATTGAGATTAAGAAG-ATC-ATAAACAAACCCGCAAAA 57
Query 58 ATGGTTGCTTTCACAAAACGCAGGGCCGGTCTCTTCCGCAAAGCTTCACAGCTCTGTCTC 117
| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 58 ACGGTTGCTTTCACAAAACGCAGGGAAGGTCTCTTCCGCAAAGCTTCACAGCTTTGTCTC 117
Query 118 CTCTCTCCCGGCACTCAAATCGCAATCTTAGCGACTCCTATGACTTCCAATTCTCATGCT 177
|||||||| | |||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 118 CTCTCTCCAGCCACTCAAATCGCAATCTTAGCGGCTCCTATGACTTCCAAATCTCACGCT 177
Query 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAGCGTTGTCTCCTCTCTGCTTTACGAC 237
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAACGTTGTCTCCTCTCTGCTTTATGAC 237
Query 238 CAGCCTCCTCTTCCGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAGAC 297
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CATCCTCCTCTTACGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAGAC 297
Query 298 AAACGTTTTGATGTATCGGAGAACGTTGAGGAGTTAAAAGATGCGGTCGATGCGGTTTCG 357
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 298 AAACGTTTTGACGTATCGGAGAACGTTGAGGAGTTAAAAGAGGCGGTCGATGCTGTTTCG 357
Query 358 AGGATGTTGAACAATGTGAGGTTACGATTAAATGATGCCGTGAAGAACACTCAAAGAGAT 417
|||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 358 AGGATGTTGAACAATGTGAGATGCCGATTAAATGATGCCGTGAAGAGTACTCAAAGAGAT 417
Query 418 GGATGTTTAGAGATTCTTC--C-TCAGGAGGAGGAAGTTCATCAGATTCGCAATGAAGAG 474
||| ||||||||||||||| | ||||||||||||||||| ||||| |||||| || |||
Sbjct 418 GGAGGTTTAGAGATTCTTCATCATCAGGAGGAGGAAGTTCTTCAGACTCGCAACGACGAG 477
Query 475 ACAAAGACGAATCAA--T------TT-GTAGGCG---AAACTTCTGGTTCTGCAAGTTTC 522
||||||||||||||| | || | ||||| |||||||||||||||||||||
Sbjct 478 ACAAAGACGAATCAAACTCACGAATTTGAAGGCGGCGAAACTTCTGGTTCTGCAAGTTGG 537
Query 523 TTAGAGAACGAGGAGGATATTCTTCACTTTGATGAT 558
|||||||||||||| |||||||||||||||||||||
Sbjct 538 TTAGAGAACGAGGATGATATTCTTCACTTTGATGAT 573
> AT1G60920.1 | Symbols: AGL55 | AGAMOUS-like 55 | chr1:22429692-22430267
REVERSE LENGTH=576
Length=576
Score = 488 bits (264), Expect = 2e-137
Identities = 473/572 (83%), Gaps = 22/572 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGGCA-AAAAACGTAAGATAAAGATTAAAAGAATCGAAAACAAAG-TCGCAAGAA 58
|||||||||| ||||| | |||||| |||| || ||||||||| | ||| || |||
Sbjct 1 ATGGGAGGCACAAAAA-GAAAGATAGAGATGAAGAGAATCGAAGA-TAAGAACGTGAGAG 58
Query 59 TGGTTGCTTTCACAAAACGC-AGGGCCGGTCTCTTCCGCAAAGCTTCACAGCTCTGTCTC 117
|||||||||||||||||| | | ||| ||||||| |||||||||| |||||||||||
Sbjct 59 CAGTTGCTTTCACAAAACGCAAAAG-CGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTC 117
Query 118 CTCTCTCCCGGCACTCAAATCGCAATCTTAGCGACTCCTATGACTTCCAATTCTCATGCT 177
|||||||| || |||||||||||||||||||| |||||| | ||||| | || ||||||
Sbjct 118 CTCTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCT 177
Query 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGAT-AGCGTTGTCTCCTCTCTGCTTTACGA 236
||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| || |
Sbjct 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATCA-CGTTGTCTCCTCTCTCCTTCACAA 236
Query 237 CCAGCCTCC-TCT-T-CCGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGA 293
|||| ||| ||| | || |||||||||| ||||| |||||||||||||||||||||||
Sbjct 237 TCAGCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGA 296
Query 294 AGACAAA-CGTTTTGAT-GTATCGGAGAACGTTGAGGAGTTAAAAGATGCGGTCGATGCG 351
|||| || | ||| || | || ||||||||| || ||||| ||||| || |||||||||
Sbjct 297 AGACCAAGCCTTT-GACAG-ATTGGAGAACGTCGACGAGTTGAAAGAGGCAGTCGATGCG 354
Query 352 GTTTCGAGGATGTTGAACAATGTGAGGTTACGATTAAATGATGCCGTGAAGAACACTCAA 411
||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||
Sbjct 355 GTTTCGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAA 414
Query 412 AGAGATGGATGTTTAGAGATTCTTCCTCAGGAGGAGGAAGTTCATCAGATTCGCAATGAA 471
||||||||| |||||| ||||| || |||| ||||| |||| |||| || || | ||
Sbjct 415 AGAGATGGAAGTTTAGTGATTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAA 474
Query 472 GAGACAAAGACGAAT--C-AATTT-GTAGGCGAAACTTCTGGTTCTGCAAGTTTCTTAGA 527
|| ||||| | ||| | || | | ||| |||||||| | |||||||||||| ||| |
Sbjct 475 GACACAAAT-CAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAA 533
Query 528 GAACG-AGGAGGATATTCTTCACTTTGATGAT 558
||||| || ||||| ||| ||| ||||||||
Sbjct 534 GAACGTAGT-GGATAATCTACACATTGATGAT 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5