BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475246
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60850.2 | Symbols: ATRPAC42, AAC42 | DNA-directed RNA polym... 1768 0.0
AT1G60620.1 | Symbols: ATRPAC43, RPAC43 | RNA polymerase I subu... 977 0.0
> AT1G60850.2 | Symbols: ATRPAC42, AAC42 | DNA-directed RNA polymerase
family protein | chr1:22397916-22400362 REVERSE LENGTH=1380
Length=1380
Score = 1768 bits (957), Expect = 0.0
Identities = 1131/1213 (93%), Gaps = 20/1213 (2%)
Strand=Plus/Plus
Query 1 CCGTTTGTTCTTCATCTCCTCGCCGCCG---CCAACTCTCTCTTTCTCTCAAAATTGCTC 57
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 2 CCGTTTGTTCTTCATCTCCTCGCCGCCGCCTCCTACTCTCTCTTTCTCTCTAAATTGCTC 61
Query 58 AA-TATCTCAGCCACAGGTAAGCTTCTAACCCTAGACAAGGATGGTGACTAAAGCAGAAA 116
|| | |||| ||||| || | ||||||||||||||||||||||||||||||
Sbjct 62 AATTCTCTCGGCCAC-----AG------A-CCTAGACAAGGATGGTGACTAAAGCAGAAA 109
Query 117 AGCAATTCGCCAAGAACTTCAACATAGACGATCTCCCTGACGTCCCTACTGGACTTCCTC 176
| ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 110 AACAATTCGCCAAAAATTTCAACATAGACGATCTCCCTGACGTCCCTGCCGGACTTCCTC 169
Query 177 CACATCTCAAAGCCCAGCAAACTGGCGTCGTCTCTAATAACAACGCTCCT-CTTCATACT 235
||||||||||||||||||||||| | ||||||||||| |||||||||||| | |||||||
Sbjct 170 CACATCTCAAAGCCCAGCAAACTCGTGTCGTCTCTAAAAACAACGCTCCTGC-TCATACT 228
Query 236 GCGAGTGCCATTTACTCTGGTAGCTATGTTTCTTCT-CTGGGAGTGGACGACAGTGTGAA 294
||||||||||||||||| |||| ||||||||||||| | || || |||||||| ||||||
Sbjct 229 GCGAGTGCCATTTACTCGGGTACCTATGTTTCTTCTAC-GGAAGAGGACGACAATGTGAA 287
Query 295 ACTAGGAAACTTCTATGAGAATTTCAAAGTTGATGTCATTAGTCTCACAAAGACTGATAT 354
||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||
Sbjct 288 GCTAGGAAACTTCTATGATAACTTCAAAGTTGATGTGGTTAGTCTCACAAAGACAGATAT 347
Query 355 GGAATTCGATATGATTGGTATCGATGCAGCGTTTGCCAATGCATTCCGAAGGATCCTTAT 414
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 348 GGAATTTGATATGATTGGTATTGATGCAGCGTTTGCCAATGCATTCCGAAGGATCCTTAT 407
Query 415 AGCTGAGCTTCCTTCAATGGCTATTGAAAAAGTTTTAATAGCATACAACACATCGGTTAT 474
||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 408 AGCTGAGGTTCCTTCAATGGCTATTGAAAAAGTGTTGATAGCGTACAACACATCGGTTAT 467
Query 475 TATAGATGAGGTTCTTGCTCACAGGATGGGTCTTATTCCAATTGCCGCAGATCCAAGGCT 534
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 468 TATAGACGAAGTTCTTGCTCACAGGATGGGTCTTATTCCAATTGCCGCAGATCCAAGACT 527
Query 535 ATTTGAATATTTATCCGAAAATGATCAGGCGAATGAAAAGAACACCATTGTTTTCAAACT 594
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 528 TTTTGAATATTTATCCGAACATGATCAGGCGAATGAAAAGAACACCATTGTATTCAAACT 587
Query 595 CCATGTGAAATGTCCGAAAAATAGACCACGTCTTAAAGTTTTAACGAGCGATTTAAAATG 654
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 588 CCATGTGAAATGTCCGAAAAATAGACCACGTCTTAAAGTTTTAACGAGTGATTTAAAATG 647
Query 655 GTTACCAAATGGAAGTGAGTTTCTTAGAGAATCGGGAGGTTCAACCTCAAAGCCAAAAAC 714
||||||||||||||||||| |||| |||||||||| | | ||||||||||||||||||
Sbjct 648 GTTACCAAATGGAAGTGAGCTTCTGAGAGAATCGGAAAATAAAACCTCAAAGCCAAAAAC 707
Query 715 TTACACTTCATTCAGTTGCAGCCAAGATTCCTTACCCGAATTTGCTAATAATCCTATCAC 774
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 708 TTACACTTCATTCAGTTGCAGCCAAGATTCATTACCTGAATTTGCTAATAATCCTATCAC 767
Query 775 TCCGTGCGACCTCGATATCTTGATAGCAAAACTCGCCCCTGGTCAGGAAATCGAACTCGA 834
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 TCCATGCGACCTCGATATCTTGATAGCAAAACTCGCCCCTGGTCAGGAAATCGAGCTCGA 827
Query 835 AGCTCATGCGGTTAAGGGCATTGGTAAAACACATGCAAAGTGGTCCCCAGTAGGGACTGC 894
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 828 AGCTCATGCGGTTAAGGGCATTGGTAAAACACATGCAAAGTGGTCTCCAGTAGGGACTGC 887
Query 895 TTGGTATAGAATGCATCCTGAGGTGGTTCTACGTGGGGAAGTTGAGGATGAGCTTGCTGA 954
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 888 TTGGTATAGAATGCATCCTGAGGTGGTTCTACGTGGGGAAGTTGAGGATGAACTTGCTGA 947
Query 955 ACGACTTGTAAAAGTCTGCCCACAGAATGTTTTCGACATTGAAGACATGGGAAAAGGTAG 1014
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACGACTTGTAAACGTCTGCCCACAGAATGTTTTCGACATTGAAGACATGGGAAAAGGTAA 1007
Query 1015 GAAAAGGGCAACAGTAGCGCAGCCACGTAAGTGCACGTTGTGTCAGGAATGCGTAAGAGA 1074
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1008 GAAAAGGGCAACAGTAGCGCAGCCACGTAAGTGCACATTGTGTAAGGAATGCGTAAGAGA 1067
Query 1075 CGATGATTTGGTAGAACGTGTTGATCTTGGCAGTGTCAGGAACCATTTTATATTTAACAT 1134
||||||||||||||| | ||| |||||||||||||| | |||||||||||||||||||||
Sbjct 1068 CGATGATTTGGTAGACCATGTGGATCTTGGCAGTGTTAAGAACCATTTTATATTTAACAT 1127
Query 1135 CGAGTCCACCGGATCACTTCCTCCGGACGTTCTCTTCACTGAAGCTGTGAAGATATTGGA 1194
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1128 TGAGTCCACCGGATCACTGCCTCCAGAGGTTCTCTTCACTGAAGCTGTGAAGATATTGGA 1187
Query 1195 AGCTAAATGTGAA 1207
|||||||||||||
Sbjct 1188 AGCTAAATGTGAA 1200
> AT1G60620.1 | Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit
43 | chr1:22331106-22333524 FORWARD LENGTH=1431
Length=1431
Score = 977 bits (529), Expect = 0.0
Identities = 947/1143 (83%), Gaps = 52/1143 (5%)
Strand=Plus/Plus
Query 92 ACAAGGATGGTGACTAAAGCAGAAAAGCA-ATTCGCCAAGAACTTCAACATAGACGATCT 150
|||||||| |||||| | | ||||||| | | || ||||||||||||||| |||||
Sbjct 138 ACAAGGATTGTGACTGATGAAGAAAAG-AGAGAAGCGAAGAACTTCAACATATTTGATCT 196
Query 151 CCCTGACGTCCCTACTGGACTTCCTCCACATCTCAAAGC-CCAGCAAACTGGCGTCGTCT 209
||||||||| ||||| ||||||||||| ||||| ||| ||||| |||| |||| ||||
Sbjct 197 CCCTGACGTTCCTACCGGACTTCCTCCGCATCT-TGAGCTCCAGCGAACTCGCGTTGTCT 255
Query 210 CTAATAACAACGCTCCTCTTCATACTGCGAG-TGCCA-TTTACTCTGGTAG-CTATGTTT 266
||| || | || | ||||| || || | | || ||| ||| ||| | ||| ||
Sbjct 256 GTAAGAAGGATTCTAATATTCATCCTACG-GCTATCACTTT-CTCGGGT-GCCTA---TT 309
Query 267 CTTCTCTGGGAGTGGACGACAGTGTGAAACTAGGAAACTTCTATGAGAATTTCAAAGTTG 326
| ||| ||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||
Sbjct 310 CCTCTATGGGAGTGGACAACAGTGTGAGACTAGAAAACTTCTCTGAGGATTTCAAAGTTG 369
Query 327 ATGTCATTAGTCTCACAAAGACTGATATGGAATTCGATATGATTGGTATCGATGCAGCG- 385
|||| |||||||||||| |||| ||||||| |||||||||||| ||| || |||||| |
Sbjct 370 ATGTGATTAGTCTCACAGAGACAGATATGGTATTCGATATGATCGGTGTCCATGCAG-GA 428
Query 386 TTTGCCAATGCATTCCGAAGGATCCT-TATAGCTGAGCTTCCTTCAATGGCTATTGAAAA 444
| || ||||| |||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 429 ATCGCTAATGCTTTCCGAAGAATCCTCT-TAGCTGAGCTTCCTTCAATGGCTATTGAAAA 487
Query 445 AGTTTTA-ATAGCATACAACACATCGGTTATT-ATAGATGAGGTTCTTGCTCACAGGATG 502
|| | || ||||| ||||||||||||||||| | ||| || ||||||||||||||| ||
Sbjct 488 AG-TGTATGTAGCAAACAACACATCGGTTATTCA-AGACGAAGTTCTTGCTCACAGGTTG 545
Query 503 GGTCTTATTCCAATTGCCGCAGATCCAAGGCTATTTGAATATTTATCCGAAAATGATCAG 562
|||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 546 GGTCTTATTCCAATTGCCGCAGATCCGAGACTCTTTGAATATTTATCTGAAAACGATCAG 605
Query 563 GCGAATGAAAAGAACACCATTGTTTTCAAACTCCATGTGAAATGTCCGAAAAA-TAGACC 621
| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 606 CCAAATGAAAAGAACACCATTGTTTTCAAACTCCATGTGAAATGTCT-AAAAGGT-GACC 663
Query 622 A-CGTCTTAAAGTTTTAACGAGCGATTTAAAATGGTTACCAAATGGAAGTGAGTTTCTTA 680
|||| |||||| ||||| ||||| || |||||||||||||||||||||||| || | |
Sbjct 664 CGCGTCGTAAAGTCTTAACAAGCGAATTGAAATGGTTACCAAATGGAAGTGAGCTTATCA 723
Query 681 GAGAATCGGGAGGTTCAACCTCAAAGCCAAAAACTTACACTTCATTCAGTTGCAGCCAAG 740
|||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 724 AAGAATCTGGAGGTTCAACCACAACGCCAAAAACTTACACTTCATTCAACCATAGCCAAG 783
Query 741 ATTCCTTACCC-GAATTTGCT-AATAATCCTATCACTCCGTGCG-ACCTCGATATCTTGA 797
||||||| ||| ||||||||| || |||||||||| || | | ||||||||||
Sbjct 784 ATTCCTT-CCCTGAATTTGCTGAA-AATCCTATCAGGCCAACCTTAAAA-GATATCTTGA 840
Query 798 TAGCAAAACTCGCCCCTGGTCAGGAAATCGAACTCGAAGCTCATGCGGTTAAGGGCATTG 857
|||||||||| | |||||| ||||||||||| || || |||||||| |||||||||||||
Sbjct 841 TAGCAAAACTTGGCCCTGGCCAGGAAATCGAGCTTGAGGCTCATGCCGTTAAGGGCATTG 900
Query 858 GTAAAACACATGCAAAGTGGTCCCCAGTAGGGACTGCTTGGTATAGAATGCATCCTGAGG 917
|||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||
Sbjct 901 GTAAAACACATGCAAAGTGGTCCCCAGTAGCAACGGCTTGGTATCGAATGCTTCCTGAGG 960
Query 918 TGGTTCTACGTGG-GGAAGTT-GAGGATGAGCTTGCTGAACGA-CTTGTAAAAGTCTGCC 974
||||||||| | |||| || |||| | | | ||| ||| || || |||||||||||||
Sbjct 961 TGGTTCTAC-TAAAGGAA-TTCGAGGGTAAACATGCCGAA-GAACTCGTAAAAGTCTGCC 1017
Query 975 CACA-GAATGTTTTCGACATTGAAGACATGGGAAAAGGTAGGAAAAGGGCAACAGTAGCG 1033
| || ||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1018 C-CAAGAAAGTTTTTGACATTGAAGACATGGGCCAAGGTAGGAAGAGGGCAACAGTAGCT 1076
Query 1034 CAGCCACGTAAGTGCACGTTGTGTCAG-GAATGCGTAAGAGACG-A-TG-ATTTGGTAGA 1089
| ||| ||| | || |||||||| || |||||| ||||||| | | || | | || ||
Sbjct 1077 CGGCCGCGTGATTGTTCGTTGTGT-AGAGAATGCATAAGAGATGGAGTGGAATGGG-AGG 1134
Query 1090 ACGT-GTTGATCTTG-GCAGTGTCAGGAACCATTTTATATTTAACA-TCGAGTCCACCGG 1146
|| || ||||| | || |||||| ||||||||||||||||| || | |||||||| ||
Sbjct 1135 ACCAAGTGGATCT-GCGCCGTGTCAAGAACCATTTTATATTTA-CAATTGAGTCCACGGG 1192
Query 1147 ATCACTTCCTCCGGACGTTCTCTTCA-CTGAAGCTGTGAAGATATTGGAAGCTAAATGTG 1205
||||| |||||||| ||||| |||| | ||||| |||||||||||||||| ||||||||
Sbjct 1193 ATCACAGCCTCCGGAGGTTCTTTTCAAC-GAAGCAGTGAAGATATTGGAAGATAAATGTG 1251
Query 1206 AAA 1208
|||
Sbjct 1252 AAA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5