BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475251
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49850.1 | Symbols: | RING/U-box superfamily protein | chr1... 1299 0.0
> AT1G49850.1 | Symbols: | RING/U-box superfamily protein | chr1:18455064-18456544
REVERSE LENGTH=1115
Length=1115
Score = 1299 bits (703), Expect = 0.0
Identities = 892/975 (91%), Gaps = 45/975 (5%)
Strand=Plus/Plus
Query 1 TCACGTCCGGGTCGATCCGACCCGGATTTAGAATCCGACTCTTCTTCTTATCGACACTAC 60
||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||
Sbjct 137 TCACGTCCGGGTCGATCCGACCCGGCTTTAGAATCCGACACTTCTTCCTATCGACACCAC 196
Query 61 TCACACCATCATCATCATTGCCGCCACGGCGTCAATCATCATAATCAACGTCATGATTCC 120
|||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 197 TCACACCATCATCATC---GCCGTCACGGCGTCCATCATCATAATCAGCGTCATGATTCC 253
Query 121 GACGGCTGTGATCCCCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTGTCACC-TTC- 178
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 254 GACGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTTTCACCATCCG 313
Query 179 --T-A-GAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTGGTCAGTATTTGAATACG 234
| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 314 ATTCAGGAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTAGTCAGTATTTAAATACG 373
Query 235 GACAGTACTGATATTGATACTCAAAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGG 294
|| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 374 GATAGTACTGATACTGAAACTCAGAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGG 433
Query 295 CTTCCTGGAGCTGTTCTGCTCGCAAGGGCTAGACTTTTCGAGAGACTGAGAGGTGTTTCT 354
|||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||
Sbjct 434 CTTCCTGGAGCTGTTCTGCTTGCAAGGGATAGACTTTTCGAAAGATTGAGAGGTGTTTCT 493
Query 355 TTGTCTAGTAACAGTCGAAGCAACAGAGTTTCATTGGGAGATGATCAAAGGGAGTCTTCA 414
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 494 TTGTCTAGTAACAGTCGAAGCAACAGAGTTTCATT--G-GATGATCAAAGGGAGTCTTCA 550
Query 415 TTTCATTCTATAGATGGAGATCCAATTTTTCAACTAGAAGGGCTTCAAGTGACCTATGAA 474
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 551 TTTCATTCTATAGATGGAGATCCAATTTTTCAACTAGCAGGGCTTCAAGTGACCTATGAA 610
Query 475 TGCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGACAAACT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 611 TGCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGGCAAACT 670
Query 535 TTTAGCTCAGCCGAGGTTAA-TACCGAGATGAAAGATTGTAGCATATGTTTAGAGAGTTT 593
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 671 TTTAGCTCAGCCGAGGTTAAAT-CCGAGATGAGAGATTGTAGCATATGTTTAGAGAGTTT 729
Query 594 CACAAAAGGCGACATGCTTATATCCTTACCATGTACCCATAGTTTCCATTCTTCTTGCTT 653
||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 730 CACTAAAGGTGACATGCTAATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTT 789
Query 654 AAACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTATTGCCGTAGAGCCATAGCTAAGGA 713
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 790 AAACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTGTTGCCGTAGAGCCATAGCAAAGGA 849
Query 714 ATAGAAACTTGTAAATAGAATCTTTGCCTAACCATT---C--T-----T-----T-TTCT 757
|||||||||||||||||||||||||||||||||||| | | | | ||||
Sbjct 850 ATAGAAACTTGTAAATAGAATCTTTGCCTAACCATTAGGCCATAGCCATACACATCTTCT 909
Query 758 -T-------GCTATAGACATCCTCAAATCGGTCTTC-GAGTTTTGTCGCCCATGAGTGCt 808
| |||||||||||||| ||| || ||||| ||||||||||||||||||||| |
Sbjct 910 CTTCTTCTTGCTATAGACATCCTTAAAACGATCTTCTGAGTTTTGTCGCCCATGAGTGTT 969
Query 809 ttttttGCTGTCACATGTTGTGTTTGTAACGGTTTTTGTTGTGCCATTAGGTAGTTCAAG 868
|||||| |||||||||||| ||| || ||||||||||||||||||||| ||||||||
Sbjct 970 TTTTTTACTGTCACATGTT-TGT----AATGGTTTTTGTTGTGCCATTAGGCAGTTCAAG 1024
Query 869 CGTTGATATTGTATGGTGTGAATCTTTTTAGTTTTCTTCACTGTGATC-CTCTTTTAATG 927
||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1025 CGTTGATATCGTATGGTGTGAATCTTTTTAGTTTTATTCACTGTGATCTCTCTTTTAATG 1084
Query 928 TCTTGTTGGTTATAT 942
|||||||||||||||
Sbjct 1085 TCTTGTTGGTTATAT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5