BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475252
Length=2354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60800.1 | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:2... 3297 0.0
> AT1G60800.1 | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:22383453-22387457
REVERSE LENGTH=2573
Length=2573
Score = 3297 bits (1785), Expect = 0.0
Identities = 2221/2416 (92%), Gaps = 91/2416 (4%)
Strand=Plus/Plus
Query 1 TCTCTATCTCTTGTCACTGCTCGTTTAGCACTCATTCTCTTAAT-G---CTTCAGTCAAA 56
||||||||||||||||| |||||||||||| ||||||||||||| | ||||| |||||
Sbjct 187 TCTCTATCTCTTGTCACAGCTCGTTTAGCATTCATTCTCTTAATCGTTTCTTCATTCAAA 246
Query 57 AATTCTCTCTTTCTAAGCTGAGTGTCTTGCAAGTCGTCATTTTTCAATTTGGGTCTTCTT 116
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 247 AATTCTCTCTTTCTAAGCTGAGTAACTTGCAAGTCGTCATTTTTCAATTGGGGTCTTCTC 306
Query 117 C-TTTTACTCCAGTCAAGAATTTGATTCGAATTGAAATCAGATAGAAAAGAGACGTTCCA 175
| ||||||| || | || |||||||||||| | || ||||||| ||||||
Sbjct 307 CTTTTTACT----TC------CT--TT-GAATTGAAATCACAGAG-AAAGAGAGGTTCCA 352
Query 176 TTGCTGG-AAA-GAGATTGCTCAAAGTGt-ttttttttGTCTGAATAAAGAC--AG-AGA 229
||||||| ||| | ||||||||||| | | ||| | ||||| ||||||||| || |||
Sbjct 353 TTGCTGGAAAATG-GATTGCTCAAA-T-TAGTTTCTGTGTCTAAATAAAGACAGAGAAGA 409
Query 230 AG---A--AG----AA---AA----TTTTTTAAGATATGGGAGAGAGAAAAATGAGTTGG 273
|| | || || || |||||| ||||||||||||||||||||||||||||
Sbjct 410 AGAAAAGTAGACAAAAGCTAAGTTTTTTTTTCAGATATGGGAGAGAGAAAAATGAGTTGG 469
Query 274 TGGGTTTC-CTGAAACTTG-TTTT-TTCAGACCAAAGATGATTGCTTTAAGAAGGGATAT 330
|||| ||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 470 TGGG-TTCTTTGAAACTTGTTTTTGTTCAGACCAAAGTTGATTGCTTTAAGAAGGGATAT 528
Query 331 GG-A--TG-GA-A-----AGTGT-AAGATTAGGGTTTCTGGTTTTGGTATTGTTGC-TTG 378
|| | || || | |||| |||||||| ||||||||||| |||| ||| | |||
Sbjct 529 GGAAGGTGTGAGATTTGTGGTGTGGAGATTAGGATTTCTGGTTTTTGTATGGTT-CTTTG 587
Query 379 ATGTCTCTACTGCTACACTTTCTCCTACTGGTGTAAACTATGAAGTGACGGCTTTAGTGG 438
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 588 ATATCTCTTCTGCTACACTTTCTCCTACTGGTGTAAACTATGAAGTGACAGCTTTGGTTG 647
Query 439 CTGTGAAGAATGAATTGAATGATCCGTACAATGTTCTTGAGAATTGGGATGTGAATTCAG 498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 648 CTGTGAAGAATGAATTGAATGATCCGTACAAAGTTCTTGAGAATTGGGATGTGAATTCAG 707
Query 499 TTGATCCTTGTAGCTGGAGAATGGTTACTTGCACTGATGGCTATGTCTCTGGATTGGTA- 557
|||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |
Sbjct 708 TTGATCCTTGTAGCTGGAGAATGGTTTCTTGCACTGATGGCTATGTCTCTTCACTGG-AT 766
Query 558 CTTCCTAGCCAAAGCTTGTCTGGTACATTGTCTCCTAGAATCGGAAACCTCACCTATCTA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 767 CTTCCTAGCCAAAGCTTGTCTGGTACATTGTCTCCTAGAATCGGAAACCTCACCTATTTA 826
Query 618 GAATCTGTGTTGTTGCAAAACAATGCAATCACTGGTCCAATTCCCGAAACGATTGGGAGG 677
|||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 827 CAATCAGTGGTGTTGCAAAACAATGCAATCACTGGTCCAATTCCGGAAACGATTGGGAGG 886
Query 678 TTGGAGAAGCTTCAGACACTTGATCTTTCGAACAATTCATTCACCGGGGAGATACCGGCC 737
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TTGGAGAAGCTTCAGTCACTTGATCTTTCGAACAATTCATTCACCGGGGAGATACCGGCC 946
Query 738 TCACTTGGAGAACTCAAGAACTTGAATTACTTGCGGTTAAACAATAACAGTCTTTTAGGA 797
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 947 TCACTTGGAGAACTCAAGAACTTGAATTACTTGCGGTTAAACAATAACAGTCTTATAGGA 1006
Query 798 ACTTGCCCTGAGTCTCTATCCAAGATTGAGGGACTCACTCTAGTCGACATTTCGTATAAC 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ACTTGCCCTGAGTCTCTATCCAAGATTGAGGGACTCACTCTAGTCGACATTTCGTATAAC 1066
Query 858 AATCTTAGCGGTTCACTGCCAAAAGTTTCTGCCAGAACTTTCAAGGTAATTGGTAATGCA 917
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AATCTTAGTGGTTCGCTGCCAAAAGTTTCTGCCAGAACTTTCAAGGTAATTGGTAATGCG 1126
Query 918 TTGATCTGTGGCCCAAAAGCTGTTTCAAACTGCTCTGCTGTCTTTCCCGAGCCGCTCACG 977
|| ||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||
Sbjct 1127 TTAATCTGTGGCCCAAAAGCTGTTTCAAACTGTTCTGCTGT-T--CCCGAGCCTCTCACG 1183
Query 978 CTTCCACAAGATGGTCCACCAGATGAATCAGGAACTCGTACCAATGGCCATCACGTAGCT 1037
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1184 CTTCCACAAGATGGTCCA---GATGAATCAGGAACTCGTACCAATGGCCATCACGTTGCT 1240
Query 1038 CTTGCATTCGCCGCAAGCTTCAGTGCAGCATTTTTTGTTTTCTTTACAAGCGGAATGTTT 1097
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CTTGCATTTGCCGCAAGCTTCAGTGCAGCATTTTTTGTTTTCTTTACAAGCGGAATGTTT 1300
Query 1098 CTTTGGTGGAGATATCGGCGTAACAAGCAAATATTTTTTGACGTTAATGAACAATATGAT 1157
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CTTTGGTGGAGATATCGCCGTAACAAGCAAATATTTTTTGACGTTAATGAACAATATGAT 1360
Query 1158 CCAGAAGTGAGTTTAGGGCACTTGAAGAGGTATACTTTCAAAGAGCTTAGATCTGCGACC 1217
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1361 CCAGAAGTGAGTTTAGGGCACTTGAAGAGGTATACATTCAAAGAGCTTAGATCTGCCACC 1420
Query 1218 AATCATTTCAACTCGAAAAACATTCTCGGAAGAGGCGGATACGGGATTGTGTACAAAGGA 1277
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 AATCATTTCAACTCGAAGAACATTCTCGGAAGAGGCGGATACGGGATTGTGTACAAAGGA 1480
Query 1278 CACTTAAGCGATGGAACTTTGGTGGCTGTCAAACGTCTCAAGGACTGTAACATTGCGGGC 1337
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CACTTAAACGATGGAACTTTGGTGGCTGTCAAACGTCTCAAGGACTGTAACATTGCGGGT 1540
Query 1338 GGTGAAGTCCAATTCCAAACAGAAGTAGAGACTATAAGTTTGGCTCTTCATCGCAATCTC 1397
|| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 GGAGAAGTCCAGTTTCAGACAGAAGTAGAGACTATAAGTTTGGCTCTTCATCGCAATCTC 1600
Query 1398 CTCAGGCTCCGTGGTTTCTGTAGTAGCAACCAGGAGAGAATCTTAGTCTACCCTTACATG 1457
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1601 CTCCGGCTCCGCGGTTTCTGTAGTAGCAACCAGGAGAGAATTTTAGTCTACCCTTACATG 1660
Query 1458 CCAAATGGGAGCGTCGCATCACGCTTGAAAGATAATATCCGGGGAGAGCCAGCATTAGAC 1517
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1661 CCAAATGGGAGTGTCGCATCACGCTTAAAAGATAATATCCGTGGAGAGCCAGCATTAGAC 1720
Query 1518 TGGTCGAGAAGGAAGAAGATAGCGGTTGGGACAGCTAGAGGACTAGTGTACCTACACGAG 1577
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1721 TGGTCGAGAAGGAAGAAGATAGCGGTTGGGACAGCGAGAGGACTAGTTTACCTACACGAG 1780
Query 1578 CAATGTGACCCAAAGATCATACACCGCGATGTGAAAGCAGCTAACATTTTATTGGATGAG 1637
||||||||||| ||||| |||||||||||||||||||||||||||||| | || ||||||
Sbjct 1781 CAATGTGACCCGAAGATTATACACCGCGATGTGAAAGCAGCTAACATTCTGTTAGATGAG 1840
Query 1638 GACTTTGAGGCAGTTGTTGGTGATTTCGGGTTAGCTAAGCTTCTAGACCATAGAGACTCT 1697
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1841 GACTTCGAAGCAGTTGTTGGTGATTTTGGGTTAGCTAAGCTTCTAGACCATAGAGACTCT 1900
Query 1698 CACGTCACAACTGCAGTCCGTGGAACCGTTGGCCACATTGCACCTGAGTACTTATCCACG 1757
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1901 CATGTCACAACTGCAGTCCGTGGAACTGTTGGCCACATTGCACCTGAGTACTTATCCACG 1960
Query 1758 GGTCAGTCCTCTGAGAAGACTGATGTCTTTGGCTTTGGTATACTTCTCCTTGAGCTCATC 1817
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1961 GGTCAGTCCTCAGAGAAGACTGATGTCTTTGGCTTTGGCATACTTCTCCTTGAGCTCATT 2020
Query 1818 ACTGGTCAGAAAGCACTTGATTTTGGCCGATCCGCTCACCAAAAAGGCGTCATGCTTGAC 1877
|||||||||||||| |||||||||||| ||||||| ||||| ||||| || |||||||||
Sbjct 2021 ACTGGTCAGAAAGCTCTTGATTTTGGCAGATCCGCACACCAGAAAGGTGTAATGCTTGAC 2080
Query 1878 TGGGTGAAGAAGCTGCATCAAGAAGGGAAACTAAAGCAGTTGATAGACAAAGATCTAAAT 1937
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2081 TGGGTGAAGAAGCTGCACCAAGAAGGGAAACTAAAGCAGTTAATAGACAAAGATCTAAAT 2140
Query 1938 GACAAGTTCGATAGAGTAGAACTCGAAGAAATCGTTCAAGTTGCGCTTCTCTGCACTCAA 1997
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2141 GACAAGTTCGATAGAGTAGAACTCGAAGAAATCGTTCAAGTTGCGCTACTCTGCACTCAA 2200
Query 1998 TTCAATCCATCTCATCGACCCAAAATGTCAGAAGTTATGAAAATGCTTGAAGGTGACGGC 2057
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2201 TTCAATCCATCTCATCGACCGAAAATGTCAGAAGTTATGAAGATGCTTGAAGGTGACGGT 2260
Query 2058 TTGGCTGAGAGATGGGAAGCGACGCAGAACGGTACTGCG-GAGAATCAGCCACCGCCATT 2116
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct 2261 TTGGCTGAGAGATGGGAAGCGACGCAGAACGGTACTG-GTGAGCATCAGCCACCGCCATT 2319
Query 2117 GCCACCGGGGATGGTGAGTTCATCGCCGCGTGTAAGGTATTACTCCGATTATATCCAGGA 2176
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct 2320 GCCACCGGGGATGGTGAGTTCTTCGCCGCGTGTGAGGTATTACTCGGATTATATTCAGGA 2379
Query 2177 ATCGTCTCTTGTAGTAGAAGCCATTGAGCTCTCGGGTCCACGATGATTGTGATTCACt-t 2235
||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
Sbjct 2380 ATCGTCTCTTGTAGTAGAAGCCATTGAGCTCTCGGGTCCTCGATGATTATGACTCACTGT 2439
Query 2236 tt-----------cttttattgtgtttgttttttgtttgtctttttATAATGTTGATATA 2284
|| ||||| ||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 2440 TTTTAAAAAATTTCTTTTCTTGGGTTTGTTTTTTATTTGTCGTTTTATAATGTTGATATA 2499
Query 2285 GATGTGAAGTTGAGTGT--AATTTTTTATGTaaa-aaaa--TACT-AAATGCGAAAGAAA 2338
||||||||||||||||| ||||||| ||||||| |||| || | |||||| |||||||
Sbjct 2500 GATGTGAAGTTGAGTGTGTAATTTTT-ATGTAAAGAAAAAATA-TGAAATGCAAAAGAAA 2557
Query 2339 ATGTTGATTAGCCTGC 2354
||||||||||||||||
Sbjct 2558 ATGTTGATTAGCCTGC 2573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116866868760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5