BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475253
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60790.1 | Symbols: TBL2 | Plant protein of unknown function... 1735 0.0
> AT1G60790.1 | Symbols: TBL2 | Plant protein of unknown function
(DUF828) | chr1:22380038-22382245 REVERSE LENGTH=1810
Length=1810
Score = 1735 bits (939), Expect = 0.0
Identities = 1021/1062 (96%), Gaps = 0/1062 (0%)
Strand=Plus/Plus
Query 523 GATTGTGATATCTACGATGGAAGTTGGGTTAGAACTGATGATGAGGCAATGCCGTATTAC 582
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 594 GATTGTGATATCTACGATGGAAGTTGGGTTAGAGCTGATGATGAGACAATGCCGTATTAC 653
Query 583 CCATCTGGTTCGTGTCCGTATATAGACAGAGATTTCAACTGTCACGCTAATGGAAGACCT 642
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CCACCTGGTTCTTGTCCGTATATAGACAGAGATTTCAACTGTCACGCTAATGGAAGACCT 713
Query 643 GATGATGCTTATGCTAAATGGAGATGGCAACCAAATGGGTGTGACATTCCCAGGTTGAAT 702
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GATGATGCTTATGTTAAATGGAGATGGCAACCAAATGGGTGTGACATTCCCAGGTTGAAT 773
Query 703 GGAACTGATTTTCTGGAGAAGTTAAGAGGGAAGAAGCTGGTTTTCGTGGGAGATTCGATA 762
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGAACTGATTTTCTGGAGAAGCTAAGAGGGAAGAAGCTGGTTTTCGTGGGAGATTCGATA 833
Query 763 AACCGGAACATGTGGGAGTCTCTTGTTTGCATTCTTAGACATAGTCTCAAGGACAAGAAA 822
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 834 AACCGGAACATGTGGGAGTCTCTTATTTGCATCCTTAGACATAGTCTCAAGGACAAGAAA 893
Query 823 CGAGTGTATGAGATTTCAGGTAGAAGAGAGTTCAAGAAGAAAGGGTTTTACGCTTTCAGA 882
|||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 894 CGAGTGTATGAGATCTCTGGGAGAAGAGAGTTCAAGAAGAAAGGGTTTTATGCTTTCAGA 953
Query 883 TTCGAGGACTATAATTGCACGGTAGATTTCGTTGGCTCGCCCTTTTTTGTAAGGGAATCA 942
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 954 TTCGAGGACTATAATTGCACGGTGGATTTCGTTGGCTCGCCCTTTTTTGTAAGGGAATCA 1013
Query 943 AGTTTCAAAGACGTGAATGGGACTACATTGGAGACTTTAAGGCTGGATATGATGGACAAG 1002
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1014 AGTTTCAAAGGTGTGAATGGGACTACATTGGAGACTTTAAGGTTGGATATGATGGATAAG 1073
Query 1003 ACGACATCCATGTATCGAGATGCTGATATACTGATTTTCAACACCGGTCATTGGTGGACT 1062
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1074 ACGACATCCATGTATCGAGATGCTGATATACTGATTTTCAACACTGGCCATTGGTGGACT 1133
Query 1063 CATGACAAAACGAAGCTAGGAGAGAACTATTACCAAGAAGGTAACGTTGTGTACCCGAGG 1122
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 CATGACAAAACAAAGCTAGGAGAAAACTATTACCAAGAAGGTAACGTTGTGTACCCGAGG 1193
Query 1123 CTCAAGGTTCTCGAAGCTTATAAACGAGCTCTCATTACTTGGGCGAAATGGGTCGATAAG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CTCAAGGTTCTCGAAGCTTATAAACGAGCTCTCATTACTTGGGCGAAATGGGTCGATAAG 1253
Query 1183 AACATCGACCGCAGTCAAACCCATGTAGTATTTAGAGGTTATTCCGTTACACATTTCAGA 1242
||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 1254 AACATCGACCGCAGTCAAACCCACATAGTATTTAGAGGATATTCCGTTACACACTTCAGA 1313
Query 1243 GGAGGGCCATGGAACTCAGGTGGACAATGCCACAAAGAAACAGAACCGATTTTCAACACG 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GGAGGGCCATGGAACTCAGGTGGACAATGCCACAAAGAAACAGAACCGATTTTCAACACG 1373
Query 1303 AGGTACTTAGCAAAGTATCCTTCGAAGATGAAAGCTCTCGAGTATATTCTCCGTGATACA 1362
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGTTACTTAGCAAAGTATCCATCGAAGATGAAAGCTCTCGAGTATATTCTCCGTGATACA 1433
Query 1363 ATGAAAACTCCGGTGATATATATGAACATAAGTCGACTAACGGATTTCAGAAAAGATGGT 1422
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1434 ATGAAAACTCCGGTGATATATATGAACATAAGTCGACTAACAGATTTCAGAAAAGATGGT 1493
Query 1423 CACCCGTCGATATATAGAATGGTGTACAGGACCGAAAAGGAGAAAAGAGAGGCCGTGAGT 1482
|| || |||||||| |||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 1494 CATCCTTCGATATACAGAATGGTTTACAGGACGGAAAAAGAGAAAAGAGAGGCCGTGAGT 1553
Query 1483 CACCAAGATTGTAGCCATTGGTGCTTACCGGGTGTTCCAGACACATGGAACCAGCTCTTG 1542
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1554 CACCAAGATTGTAGCCATTGGTGCTTGCCGGGTGTACCGGACACATGGAACCAGCTCTTG 1613
Query 1543 TATGTGTCACTGTTAAAGGCCGGGCTTGCATCTAAGTGGTAG 1584
|| || |||||||||||||||||||| || ||||||||||||
Sbjct 1614 TACGTATCACTGTTAAAGGCCGGGCTAGCGTCTAAGTGGTAG 1655
Score = 608 bits (329), Expect = 5e-173
Identities = 466/528 (88%), Gaps = 25/528 (5%)
Strand=Plus/Plus
Query 1 TTTGCATTTGGACTAACCAAGAAGATGGATTCGTCTAAGAAAGTTCTGTTTCCAGACCAA 60
||| |||||| || ||| ||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 6 TTTCCATTTGAACAAACTAAGAAGATGGACTCGTCGAAGAAACTCCTGTTTCCAGACCAG 65
Query 61 ATTTTGTCTTCTAGAAGAAACATCTTAACCAGATTCGGTTTAGGAATCGCTGCTTCTTTC 120
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 66 ATTCTGTCTTCTAGAAGAAACATATTAACCAGATTCGGTTTAGGAATCGCTGCTTCTTTC 125
Query 121 CTTCTCCTTACACTTCTCTCCCTTACTAGTTCCTCCTTCAATGT-CCCTTTCGTCTCTCC 179
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 126 CTTCTCCTTACTCTTCTCTCCCTTACTAGTTCCTCCTTCAATGTACCCTT-CGTCTCTCC 184
Query 180 TCTGCTTCAAGGTCTCAAAAGCTCCAATCTTAACACTTCGTCTTCTGTTAAGCAAGTGAA 239
|||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||
Sbjct 185 TCTGCTTCAAGGTCTCAAAAGCTCCAATCTAAACAATTCTTCTTCTGTCAAGCAAGTGAA 244
Query 240 CGAGAAGCCTGAAGTAGTAAATCTCACCGACAAGGTCCCAGGTGTCAAAGTTCCAAGCTT 299
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 245 CGAGAAGCCTGAAGTAGTGAATCTCACCGACAAGGTCCCAGATGTCAAAGTTCCAAGCTT 304
Query 300 TGATGCCGAACAAAGATCTGGAACAACAGTAGACGCTGGTTCAAAGAACACAACTTTGTC 359
|| || | || | ||| | ||||||||| |||||||||||||||||
Sbjct 305 TG-TG--G--------TC-----C--CAG-A--CGCTGGTTCGAAGAACACAACTTTGTC 343
Query 360 TGAAGAGGGTAAAGTTTCAAACTTTGATTCCGGACAAAGATCTGGAGAAGTAGTTAAGAA 419
|||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 344 TGAAGAAAGTAAAGTTCCAAGCTTTGATTCTGGACAAAGATCTGGAGAAACAGTTAAGAA 403
Query 420 CTCGAGTTTGCCAGAAGAGGGTAAAG-TCTCAGTTGCAGATGACAAAAATACCCTCGAAG 478
||||||| || | ||||||||||| | | ||||||||||||||| |||||||||| ||||
Sbjct 404 CTCGAGTCTGGCTGAAGAGGGTAATGGT-TCAGTTGCAGATGACCAAAATACCCTTGAAG 462
Query 479 TAAATGCTACAACAAGTGTGGGGAATAGCTCGAGCTTGGCGTCTGATT 526
|||||| |||||||||||||| || ||||||||||||| ||||||||
Sbjct 463 CAAATGCGACAACAAGTGTGGGAAACAGCTCGAGCTTGGTGTCTGATT 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5