BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475254
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes mediu... 2852 0.0
AT1G10730.1 | Symbols: | Clathrin adaptor complexes medium sub... 1541 0.0
> AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium
subunit family protein | chr1:22368953-22372159 REVERSE
LENGTH=1897
Length=1897
Score = 2852 bits (1544), Expect = 0.0
Identities = 1701/1774 (96%), Gaps = 22/1774 (1%)
Strand=Plus/Plus
Query 22 TAAACTTCTTCCGttttttttttCT-CTCCAACCACAAGGAACGATAACAAAATCATCAG 80
|||| |||||||||||||||||| | |||||||||||||| ||||||| ||||||||||
Sbjct 47 TAAA-TTCTTCCGTTTTTTTTTT-TAATCCAACCACAAGGATCGATAACGAAATCATCAG 104
Query 81 ATCGCCAGaaaaaaaaaaaCCAATTGCGAAATGGAGAATCTGAGCTTCGAGAGATCTGCG 140
||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||
Sbjct 105 ATCGCCAGAAAAAAAAAAA-AAATTGCGAAATGGAGAATCTGAGC-T-G-CAGATCTGCG 160
Query 141 TCAATCTCCATCTAGATG-TG--GCTACTTCTTCGTCTCCATAGAAGCATAATTTCATCA 197
|||||||||||||||||| || ||||||||||| ||| |||||| |||||||||||||
Sbjct 161 TCAATCTCCATCTAGATGTTGTTGCTACTTCTTC--CTCTATAGAACCATAATTTCATCA 218
Query 198 GATCTCGCTGATTAATCATCCGCATTTGGATCTGATTCCAAACTCCTAGGGAAGAACATG 257
||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||
Sbjct 219 GATCTCGCTGATTAATCATCCCCATTTGGATCTGA-TCGAAACTCTTAGGGAAGAACATG 277
Query 258 GCAGGAGCGGCCTCGGCTCTGTTTCTGCTCGATATCAAGGGACGTGTTCTCGTCTGGCGT 317
|||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 278 GCAGGAGCTGCCTCCGCGCTGTTTCTGCTTGATATCAAGGGACGCGTTCTCGTCTGGCGT 337
Query 318 GATTACCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATCGAG 377
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GATTATCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATCGAG 397
Query 378 AAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGTGTTACTTATATG 437
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 398 AAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGGGTGACTTATATG 457
Query 438 TTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGACAGAATTGTAATGCTGCC 497
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 458 TTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGGCAGAATTGTAATGCTGCC 517
Query 498 AGTCTTCTCTTCTTTCTTCACCGTGTAGTCGATGTTTTCAAGCATTACTTCGAGGAGTTA 557
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 518 AGTCTTCTCTTCTTTCTTCACCGCGTTGTCGATGTTTTCAAGCATTACTTCGAGGAGTTA 577
Query 558 GAAGAGGAATCATTGAGGGATAACTTTGTGGTTGTGTATGAGCTACTTGACGAGATGATG 617
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 578 GAAGAGGAATCATTGAGGGATAACTTTGTGGTAGTGTATGAGCTACTTGACGAGATGATG 637
Query 618 GACTTTGGTTACCCTCAGTATACCGAAGCAAGAATCCTCAGTGAATTCATCAAAACTGAT 677
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 638 GACTTTGGTTACCCTCAGTATACCGAAGCAAGAATTCTCAGTGAATTCATCAAGACTGAT 697
Query 678 GCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACAAATGCTGTCTCCTGG 737
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 698 GCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACGAATGCTGTCTCCTGG 757
Query 738 AGGAGTGAGGGAATACAGTACAAGAAAAATGAAGTTTTCTTGGATGTAATTGAGAATGTA 797
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 758 AGGAGTGAGGGAATACAGTACAAGAAGAATGAAGTTTTCTTGGATGTTATTGAGAATGTA 817
Query 798 AATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCCCTGAAG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 818 AATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCGCTGAAG 877
Query 858 ATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACTGAATGATAGAGTATTG 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 ATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACTGAATGATAGAGTATTG 937
Query 918 CTGGAAGCGCAGGGACGAGCAACAAAGGGAAAAGCCATTGATTTAGAGGACATCAAATTT 977
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 938 CTGGAAGCGCAGGGACGAGCAACTAAGGGAAAAGCCATTGATTTGGAGGACATCAAATTT 997
Query 978 CATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATACCACCT 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATACCACCT 1057
Query 1038 GATGGGGCTTTTGATCTGATGACATATAGACTCAGTACTCAGGTAAAACCTCTTATATGG 1097
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1058 GATGGGGCTTTTGATCTGATGACATATAGACTCAGCACTCAGGTAAAGCCACTTATATGG 1117
Query 1098 GTGGAAGCGCAAATAGAAAGTCATTCCAGAAGTCGTGTTGAGATGCTTATAAAAGCTAGA 1157
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1118 GTGGAAGCACAAATAGAAAGTCATTCAAGAAGTCGTGTTGAGATGCTCATAAAAGCTAGA 1177
Query 1158 AGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTTGCCTGTACCAACC 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTTGCCTGTACCAACC 1237
Query 1218 GATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGCTCCTGAAAAA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 GATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGCTCCTGAAAAA 1297
Query 1278 GATGCGTTAGTCTGGAAAATCAAATCTTTCCCCGGGAACAAGGAGTACATGTTAAGGGCA 1337
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1298 GATGCGTTAGTCTGGAAAATCAAATCTTTCCCGGGGAACAAGGAGTACATGTTAAGGGCA 1357
Query 1338 GAGTTCCATCTTCCCAGTATTACTGCAGAGGAAGCAACACCTGAGCGAAAAGCTCCTATC 1397
|||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1358 GAGTTCCATCTTCCAAGTATCACTGCAGAGGAAGCAACTCCTGAGCGAAAGGCTCCTATC 1417
Query 1398 CGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGTTCGGTACCTAAAG 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGTTCGGTACCTAAAG 1477
Query 1458 ATAATTGAGAAGAGCGGGTACCAAGCACTTCCATGGGTGAGATACATAACCATGGCTGGT 1517
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 ATTATTGAGAAGAGTGGGTACCAAGCACTTCCATGGGTGAGATACATAACCATGGCTGGT 1537
Query 1518 GAGTACGAACTAAGACTCGTGTAAGGCTCATTTAGTTTCATCGTCTATGTCA-TTGTGAT 1576
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 1538 GAGTACGAACTAAGACTCGTGTAATGCACATTTAGTTTCATCGTCTATGTCAATTGTGAT 1597
Query 1577 TCCCACATTCCTCCGGGGAATTGCCTGAATCAAATGAAGCAAAACGAAACAGGACAAAAG 1636
|||||||| |||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1598 TCCCACATCCCTCAAGG-AATTGCCTGAATCAAA-GAAGCAAAACGAAACAGGACAAAAG 1655
Query 1637 TAGAG--AAAAGCGAAAACGTTTTAAAACATTTTAGCTGATCAAATTTTCCTTTAATTTG 1694
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1656 TAGAGGGAAAAG--AAAACGTTTTGAAACATTTTAGCTGATCAAATTTTCCTTTAATTTG 1713
Query 1695 TTTTAGAAGCCATATTCTTGTGAATTTGTCTTTATGGTGATTTTATTTTATTTTACATGA 1754
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1714 TTTTAGAAGCCATATTCTTGTGAATTTGTCTTTATGGTGATTCTATTTTATTTTACATGA 1773
Query 1755 GGCTCTTTGTAACCTT-CACGACATGGTTACATT 1787
|||||| ||||||||| |||||||||||| ||||
Sbjct 1774 GGCTCTCTGTAACCTTTCACGACATGGTT-CATT 1806
Score = 106 bits (57), Expect = 9e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1782 TACATTTCTGTCTATGTGTTTGTTCTGCGATCGAAATTGTTAAACGTTGAGGTTTTGGTT 1841
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1824 TACATTTCTGTCTATGTGTTCGTTCTGCGATCAAAATTGTTAAACGTTGAGGTTTTGGTT 1883
Query 1842 TTG 1844
|||
Sbjct 1884 TTG 1886
> AT1G10730.1 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr1:3565463-3567779 FORWARD LENGTH=1287
Length=1287
Score = 1541 bits (834), Expect = 0.0
Identities = 1148/1299 (88%), Gaps = 24/1299 (2%)
Strand=Plus/Plus
Query 255 ATGGCAGGAGCGGCCTCGGCTCTGTTTCTGCTCGATATCAAGGGACGTGTTCTCGTCTGG 314
|||||||| |||||||| || |||||||||||||||||||| || ||||||||||| |||
Sbjct 1 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGG 60
Query 315 CGTGATTACCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATC 374
|| |||||||||||||||||| ||||||||||||| ||||| |||||||| || ||||||
Sbjct 61 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 120
Query 375 GAGAAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGTGTTACTTAT 434
|||| ||||||||||||||||||||||||||| |||||||| |||||||| || || ||
Sbjct 121 GAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTAC 180
Query 435 ATGTTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGACAGAATTGTAATGCT 494
||||||||||| |||||||| | ||| | |||||||| ||||||||||| |||||||||
Sbjct 181 ATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCT 240
Query 495 GCCAGTCTTCTCTTCTTTCTT-CACCGTGTAGTCGATGTTTTCAAGCATTACTTCGAGGA 553
||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 241 GCCAGTCTTCTCTTC-TTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGA 299
Query 554 GTTAGAAGAGGAATCATTGAGGGATAACTTTGTGGTTGTGTATGAGCTACTTGACGAGAT 613
|||||| || ||||| ||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 300 GTTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGAT 359
Query 614 GATGGACTTTGGTTACCCTCAGTATACCGAAGCAAGAATCCTCAGTGAATTCATCAAAAC 673
||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||| ||
Sbjct 360 GATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGAC 419
Query 674 TGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACAAATGCTGTCTC 733
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 420 TGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTC 479
Query 734 CTGGAGGAGTGAGGGAATACAGTACAAGAAAAATGAAGTTTTCTTGGATGTAATTGAGAA 793
|||||||||||||| || ||| |||||||| ||||||||||||||||| || ||||
Sbjct 480 ATGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAG 539
Query 794 TGTAAATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCCCT 853
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 540 TGTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTT 599
Query 854 GAAGATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACT-GAATGATAGAG 912
|||||||||||| ||||||| ||||||||||||||||||| |||| || |||||| |||
Sbjct 600 GAAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGG-CTTGAATGACAGAA 658
Query 913 TATTGCTGGAAGCGCAGGGACGAGCAACAAAGGGAAAAGCCATTGATTTAGAGGACATCA 972
||||| |||| || ||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 659 TATTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCA 718
Query 973 AATTTCATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATAC 1032
|||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||
Sbjct 719 AATTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATAC 778
Query 1033 CACCTGATGGGGCTTTTGATCTGATGACATATAGACTCAGTACTCAGGTAAAACCTCTTA 1092
|||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 779 CACCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTA 838
Query 1093 TATGGGTGGAAGCGCAAATAGAAAGTCATTCCAGAAGTCGTGTTGAGATGCTTA-TAAAA 1151
|||||||||||||||| ||||| || |||||||||||||||||||||||||| | |||||
Sbjct 839 TATGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCT-AGTAAAA 897
Query 1152 GCTAGAAGTCAGTTCAAGGA-ACGAAGC-ACCGCAACGAAC-GTTGAGATTGAGTTGCCT 1208
|||||||| || |||||||| | ||||| | ||||| || |||||||||||||| |||
Sbjct 898 GCTAGAAGCCAATTCAAGGACA-GAAGCTAT-GCAAC-AAGTGTTGAGATTGAGTTACCT 954
Query 1209 GTACCAACCGATGCATCTAACCCC-ACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGC 1267
|||||||| ||||| | ||||||| | || || |||||||| ||||| ||| | |||||
Sbjct 955 GTACCAACTGATGCGTATAACCCCGAT-GTAAGAACATCTCTCGGGTCGGCCGCATATGC 1013
Query 1268 TCCTGAAAAAGATGCGTTAGTCTGGAAAAT-CAAATCTTTCCCCGGGAACAAGGAG--TA 1324
|||||| |||||||| | |||||||| || ||| | |||| |||||||||||| ||
Sbjct 1014 TCCTGAGAAAGATGCACTGGTCTGGAAGATACAA-TATTTCTATGGGAACAAGGAGCATA 1072
Query 1325 CATGTTAAGGGCAGAGTTCCATCTTCCCAGTATTA-CTGCAGAGGAAGCAACACCTGAGC 1383
||| | || | |||| ||||||||||| ||||| | | |||||||||||||| |||||||
Sbjct 1073 CAT-TGAAAG-CAGATTTCCATCTTCCAAGTAT-AGCCGCAGAGGAAGCAACGCCTGAGC 1129
Query 1384 GAAAAGCTCCTATCCGTGTCAAATTTGAGATCCCTTATTTCACT-GTTTCAGGGATTCAG 1442
|||||||||| ||||||||||||||||||||||| | |||| | |||||||| || |||
Sbjct 1130 GAAAAGCTCCAATCCGTGTCAAATTTGAGATCCCAAAATTCA-TAGTTTCAGGAATACAG 1188
Query 1443 GTTCGGTACCTAAAGATAATTGAGAAGAGCGGGTACCAAGCACTTCCATGGGTGAGATAC 1502
||||| ||||| ||||| ||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1189 GTTCGATACCTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATAT 1248
Query 1503 ATAACCATGGCTGGTGAGTACGAACTAAGACTCGTGTAA 1541
|||||||||||||||||||||||||| |||||| |||||
Sbjct 1249 ATAACCATGGCTGGTGAGTACGAACTGAGACTCATGTAA 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91314791355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5