BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475255
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2756 0.0
> AT1G60770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:22366701-22368714 REVERSE LENGTH=1800
Length=1800
Score = 2756 bits (1492), Expect = 0.0
Identities = 1706/1808 (94%), Gaps = 19/1808 (1%)
Strand=Plus/Plus
Query 1 GACAGTGAATTAGGGTTTTACTC-AAAAACCTCCTCGTTGTCGTTGCTCACTGCTCCGAC 59
||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||
Sbjct 1 GACAGTGAATTAGGGTTTTACTCAAAAAACCTTCTCGTTGTCGTTGTTTACTGCTCCGAC 60
Query 60 GAGAAAATGGCGATGCGACATTTGAGCCGATCGAGAGACGTCACAAAGAGATCGACGAAG 119
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 GAGAAAATGGCGATGCGACATTTGAGCCGATCGAGAGACGTTACAAAGAGATCGACAAAG 120
Query 120 AAGTACATCGAAGAACCTCTTTACCATCGACTCTTCAAAGATGGCGGCACAGAGGTCAAA 179
|||||||||||||||||||| ||| |||| |||||||||||||| || ||||||||||||
Sbjct 121 AAGTACATCGAAGAACCTCTGTACAATCGCCTCTTCAAAGATGGTGGTACAGAGGTCAAA 180
Query 180 GTTCGACAGCAGCTGAATCAGTTCCTTAAAGGCACTAAACACGTCTTCAAATGGGAAGTC 239
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 181 GTTCGACAGCAGCTTAATCAGTTCCTCAAAGGCACTAAACACGTCTTCAAATGGGAGGTC 240
Query 240 GGAGATACGATCAAGAAACTCCGAAATCGGGGCCTCTATTACCCAGCTCTCAAGCTATCT 299
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGCGATACGATCAAGAAACTCCGAAATCGCGGCCTCTATTACCCAGCTCTCAAGCTATCT 300
Query 300 GAAGTTATGGAAGAGAGAGGTATGAACAAGACAGTGAGTGATCAAGCAATCCATCTTGAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTTATGGAAGAGAGAGGTATGAACAAGACAGTGAGTGATCAAGCAATCCATCTTGAT 360
Query 360 CTTGTTGCTAAAGCTCGGGGAATTACTGCTGGGGAGAATTATTTTGTTGATCTTCCGGAA 419
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTGTTGCTAAAGCTCGTGAAATTACTGCTGGGGAGAATTATTTTGTTGATCTTCCGGAA 420
Query 420 ACATCTAAGACGGAACTCACGTATGGATCTCTTTTGAACTGTTACTGCAAGGAGTTGTTG 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 ACATCTAAGACGGAACTCACGTATGGGTCTCTTTTGAACTGTTACTGCAAGGAGTTGTTG 480
Query 480 ACGGAGAAAGCGGAAGGTTTACTTAACAAGATGAAAGAGCTCAATATTACTCCTAGTTCC 539
|| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 481 ACAGAGAAAGCGGAAGGTTTGCTGAATAAGATGAAAGAGCTCAACATTACTCCTAGTTCC 540
Query 540 ATGTCTTATAACAGCCTCATGACTCTTTACACCAAGACAGGTCAGACTGAGAAAGTTCCA 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 ATGTCTTATAACAGCCTCATGACTCTTTACACCAAGACAGGTGAGACTGAGAAAGTTCCG 600
Query 600 GCGATGATCCAAGAATTGAAGGCGGAGAATGTAATGCCGGATTCATACACGTACAATGTC 659
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||||
Sbjct 601 GCGATGATTCAAGAATTGAAGGCGGAGAATGTGATGCCGGATTCGTACACTTATAATGTC 660
Query 660 TGGATGAGGGCTTTGGCTACTACTAATGATATTTCTGGTGTTGAGAGAGTCATCGAAGAG 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TGGATGAGGGCTTTGGCTGCTACTAATGATATTTCTGGTGTTGAGAGAGTCATTGAAGAG 720
Query 720 ATGAATAGAGATGGTAGAGTTGCTCCAGATTGGACTACGTATAGCAATATGGCATCTATA 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 721 ATGAATAGAGATGGTAGAGTTGCTCCGGATTGGACTACGTATAGCAATATGGCATCGATA 780
Query 780 TATGTTGATGCTGGACTGTCTCAGAAAGCTGAGAAGGCCCTTCAGGAACTGGAGATGAAA 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TATGTTGATGCTGGACTGTCTCAGAAAGCTGAGAAGGCTCTTCAGGAACTGGAGATGAAA 840
Query 840 AACACACAACGGGATTTTACGGCGTATCAGTTTCTGATTACTTTGTATGGACGTCTGGGA 899
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 841 AACACGCAACGGGATTTTACGGCATATCAGTTTCTTATTACTTTGTATGGACGTCTGGGG 900
Query 900 AAACTGACTGAAGTTTACAGGATTTGGCGTTCCTTGAGGCTGGCTATTCCGAAAACCTCA 959
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 901 AAGCTGACTGAAGTTTACAGAATTTGGCGTTCGTTGAGGCTGGCTATTCCGAAAACCTCA 960
Query 960 AATGTAGCTTATCTAAACATGATACAAGTGCTGGTCAAGTTGAATGATTTACCGGGTGCT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 AATGTAGCTTATCTAAACATGATACAAGTGCTGGTCAAGTTGAATGATTTACCTGGTGCA 1020
Query 1020 GAGACACTGTTCAAGGAATGGCAAGCTAACTGTTCTACTTATGACATCAGGATTGTAAAT 1079
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 GAGACATTGTTCAAGGAATGGCAAGCTAACTGTTCTACTTATGACATCAGGATTGTGAAT 1080
Query 1080 GTGTTGATTGGAGCTTATGCTAAAGAGGGTCTCATCGAAAAAGCAAAAGAGCTCAAGGAG 1139
||||||||||||||||||||| |||||||||| ||| | |||||||| ||||||||||||
Sbjct 1081 GTGTTGATTGGAGCTTATGCTCAAGAGGGTCTAATCCAGAAAGCAAATGAGCTCAAGGAG 1140
Query 1140 AAAGCTCCCAGAAGAGGTGGCAAGGC-CAATGCTAAAACCTGGGAGATCTTCATGGATTA 1198
|||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||
Sbjct 1141 AAAGCTCCCAGAAGAGGTGGAAAG-CTCAATGCTAAAACATGGGAGATCTTCATGGATTA 1199
Query 1199 CTATGTAAAGAGCGGTGATATGGCTC-ACGCACTCGAATGTATGTCTAAGGCAGTTTCTA 1257
|||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| || |
Sbjct 1200 CTATGTAAAGAGCGGTGATATGGCTCGA-GCACTCGAATGCATGTCAAAGGCAGTCTCCA 1258
Query 1258 TCGGCAAAGGAGATGGTGGCAAGTGGCTACCGTCACCTGAAACAGTCAGAACTTTGATGA 1317
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 TCGGCAAAGGAGATGGTGGCAAGTGGCTACCGTCACCTGAAACAGTCAGAGCTTTGATGA 1318
Query 1318 GCTATTTCGAGCAAAAGAAAGATGTTAATGGAGCTGAGAATTTGGTGGAGATTTTAAAGA 1377
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 GCTATTTCGAGCAAAAGAAAGATGTTAATGGAGCTGAGAATTTGTTGGAGATTTTAAAGA 1378
Query 1378 ATGGAACAGATAACATAGGCGCAGAAATCTTTGAGCCATTGATAAGAACATATGCAGCAG 1437
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1379 ATGGAACAGACAACATAGGCGCAGAAATATTTGAACCATTGATAAGAACATATGCAGCAG 1438
Query 1438 CGGGAAAGAGTCATCCTGCAATGAGCCGGCGCCTGAAGATGGAAAACGTGGAGGTTAATG 1497
||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1439 CGGGAAAGAGTCACCCTGCTATGCGACGGCGCCTGAAGATGGAAAACGTGGAGGTTAATG 1498
Query 1498 AAGCGACAAAGAAGCTACTTGATGAAGTATCTCAGGAGGTGTGAGGTCTGTACCATCTCT 1557
||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1499 AAGCGACAAAGAAGCTACTCGATGAAGTATCTCAGGATGTGTGAGGTCTGTTCCATCTCT 1558
Query 1558 TTCCCCTTCATTATTTC-CTTCA-AGCGACACACATTATTAGTCGTGTTAGGGGCACTGG 1615
||| ||||||||||| | ||||| | | | | |||| |||||||||| ||||| |||| |
Sbjct 1559 TTCTCCTTCATTATT-CACTTCAGA-CAA-AGACATCATTAGTCGTGATAGGGTCACTTG 1615
Query 1616 CGTTGTCACAGCTCTGTTTCTTATTGGTAATAAAAA--TAGGCTCTGAATCGGCAAAATC 1673
| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1616 CATTCTCACAGCTCTGTCTCTTATTGGTAATAAAAAAATAGGCTCTGAATCGGCAAAATC 1675
Query 1674 AATCGTATGGGTCTGTTTTACTT-CACCTTAGACTGTTTGTTCATGTTTTTGTGAATTGT 1732
||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1676 AATTGTATGGGTCTGTTTTACTTTCACCGTAGACTGTTTGTTCATGTTTTTGTGAATTGT 1735
Query 1733 TTC-GGTCTTAGCTTGGATTTACAGTTGAGACAGCTCTCACAATGTAAGCC-TATTTGTT 1790
|| ||| |||||||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 1736 TTTTGGT-TTAGCTTGGATTTACAGTTGAGACAGCTCTCACAATGTAATCCCT-TTT-TT 1792
Query 1791 TG-AGATC 1797
|| |||||
Sbjct 1793 TGGAGATC 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5