BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475269
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60610.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1807 0.0
> AT1G60610.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr1:22327912-22330276 REVERSE LENGTH=1772
Length=1772
Score = 1807 bits (978), Expect = 0.0
Identities = 1162/1249 (93%), Gaps = 20/1249 (2%)
Strand=Plus/Plus
Query 430 CTGTGATGATGATTTCTTGT-GTGTATGTAGGATCTGAAAGAAGCTTTGGTTTAAttttt 488
||||||| |||||||||| | | || ||||||||||||| |||||| |||||| |||||
Sbjct 534 CTGTGATAATGATTTCTTTTAG-GTTTGTAGGATCTGAAGGAAGCTACGGTTTATTTTTT 592
Query 489 ttGATGGGCAATCAT-TAAGAGTACTTTACGGG--TATATATACACACAAAACGGTTAAG 545
|| |||||||||| | ||| ||| ||||||||| |||||||||||| ||||||||||||
Sbjct 593 TTTATGGGCAATC-TCTAACAGTTCTTTACGGGTATATATATACACATAAAACGGTTAAG 651
Query 546 CTCTAGAGAAGATGTTGGGAGGCAACAATGAGAACCCTGTGCCGCAGGTTTTAATGAACG 605
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 652 CTCTAGAGAAGATGTTGGGAGGCAACAATGATAACCCTGTGCCGCAGGTTCTAATGAACG 711
Query 606 ACAGCCAGTTTCAGTATCAAACAAATACATCGTTGAATCAGCTTCACTTGCTTGGGACAA 665
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 712 ACAGCCAGTTTCGGTATCAATCAAACACATCGTTGAATCAGCTTCACTTGCTTGGGACGA 771
Query 666 TGAGACCTGGTTGTACTATTGATCCCGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 725
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 772 TGAGAGCTGGTTGTACTATTGATCCTGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 831
Query 726 TGATTCGGCATAATAGCAAACGCGAAAGGGAAACCGAAATCAACAATAATATGCAGAGAC 785
|||| |||| |||||||| ||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 832 TGATGCGGCTTAATAGCACACGCGGAAGGGAAACTGAAAACAACAATATTATGCAGAGAC 891
Query 786 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAAC---AATAGTGTTGTTCAAG 842
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 892 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAACAATAATACTGTTGTTCAAG 951
Query 843 ATGAAGTCCCAAAACAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATAACGATGATG 902
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 952 ATGAAGTCCCAAAGCAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATGATGATGATG 1011
Query 903 AGCGCAACTCTTCTGTAACTTCGGCAAATTTAAGTATCACAACTCCAGTCTTTCAGTCAC 962
|||||||||||||||||||||| |||||| ||| || ||||||||||||| ||||||||
Sbjct 1012 AGCGCAACTCTTCTGTAACTTCAGCAAATGGAAGCATAACAACTCCAGTCTATCAGTCAC 1071
Query 963 TCGGTGACAATATCAGATTGGACCTTGATATACAGAAAGAGGAGCTTGATCAGTTTATCA 1022
||||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||
Sbjct 1072 TCGGTGACAATATCAGATTGGACCTCAATAGACAGAACGACGAGCTTGATCAGTTTATCA 1131
Query 1023 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATAAAACAGAGACATGTCACGT 1082
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1132 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATTAAACAGAGACATGTCACGT 1191
Query 1083 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCAGGAGA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1192 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCATGAGA 1251
Query 1143 TTGAAAGCATGAACAAGAAGAACCGGGAACTTGTGGATAAGATAAAACAAGTGGCAGTGG 1202
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1252 TTGAAAGCATGAACAAGAAGAACCGGGAACTCGTGGATAAGATAAAACAAGTGGCAGTGG 1311
Query 1203 AAGCTCAGAACTGGCATTACAAAGCAAAGTACAATGAATCTGTGGTTAATGCCTTAAAGG 1262
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1312 AAGCTCAGAACTGGCATTACAAAGCAAAATACAATGAATCTGTGGTTAATGCCTTAAAGG 1371
Query 1263 TAAACTTGCAACAAGTGATGTCGCATGGAAACGACAACAATGC---AGCAGGAGTAGTAG 1319
|||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |
Sbjct 1372 TAAATTTGCAACAAGTGATGTCACATGGAAACGACAACAATGCAGTAGGAGGAGGAGTTG 1431
Query 1320 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAGGCAGCCT 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1432 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAAGCAGCTT 1491
Query 1380 CATACAACTACTTGAACATCCCGGGGATACCAAGTGCTGGGATGAGATGTAAGTCGTGTA 1439
| ||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1492 CTTACAATTACTTGAACATCCCGGGGATGCCAAGTACTGGGATGAGATGTAAGTTGTGTA 1551
Query 1440 ACGTAAAGGATGTTTCGGTCTTGCTCGTGCCGTGTAGGCACTTGAGTTTGTGTAAAGACT 1499
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1552 ACGTAAAGAATGTTTCGGTCTTGCTCGTGCCATGTAGGCACTTGAGTTTGTGTAAAGATT 1611
Query 1500 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1671
Query 1560 TCTTCTTCTTCTGAGTTGTCTTCATGCTCTTGAAAAGTTACTGATGGAGAAACATGAACA 1619
||||||||||||||||||||||||| |||||||||||| | || |||| ||||||
Sbjct 1672 TCTTCTTCTTCTGAGTTGTCTTCATACTCTTGAAAAGTAAATGGTGGA------TGAACA 1725
Query 1620 TATTTGTATGtgatgatgatgatgatgatgaAAACTTGCTCGAGTCTTT 1668
||||||||||||||| || |||||| ||||||||||| ||||||||||
Sbjct 1726 TATTTGTATGTGATGGTGGTGATGA--ATGAAAACTTGGTCGAGTCTTT 1772
Score = 390 bits (211), Expect = 2e-107
Identities = 344/403 (85%), Gaps = 29/403 (7%)
Strand=Plus/Plus
Query 1 AGAAAAAGGACAGAAGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCAC-C-AGAGAG- 57
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1 AGAAAAAGGACAGAGGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCACACCAGAGAGA 60
Query 58 -G-CACAACTCACGGGGAAAATCAGCAGAACCAATACCACCGCCACCAACTACTATTATT 115
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 61 AGGCACAACTCACGGGGAAA-TCAGCAGAACCAATACCACCGCCACCGGTTACTATTACT 119
Query 116 ATTCTTGTTTTCATCATCACCCAACaaaaaaaaaaa-a-TACTATTTTCGATTGTTTTCT 173
||||||||| |||||||| ||||| |||||||| | || ||||||||| || ||
Sbjct 120 ATTCTTGTTATCATCATCTCCCAA-AAAAAAAATGTTAGTATTATTTTCGA--GT---CT 173
Query 174 CTATTTTCAAGAAttt-tttt-ttAT-AATATC--GATTTTGCCACCCAACTTCTCCCAC 228
| |||||||| ||| |||| || | |||||| || |||||||||||||| |||||||
Sbjct 174 AT-TTTTCAAGTTTTTGTTTTGTTTTTAATATCTCGACTTTGCCACCCAACTCCTCCCAC 232
Query 229 TCCTTCACCACTGTGTCCTG-C-T--GCTGCTTTCTCACCTCTCCATCATTCATTTCTTT 284
|||||||| ||||||||||| | | |||| |||||||||| ||||||||||||||| ||
Sbjct 233 TCCTTCACAACTGTGTCCTGTCCTCTGCTGATTTCTCACCTTTCCATCATTCATTTCATT 292
Query 285 CGttttttttttCTCCCATCCGTTTCGTTTATTCTTCTTTCCCCTTAAATT-AAAATCTT 343
| ||| ||||||| || ||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 293 C-TTTCTTTTTTC-CC-ATCCGTTTCTTTTATTCTTCTTTCTCCTTAAATTTAAAATCTT 349
Query 344 TTAAATTAAATTATTGGATATTGTTGTTTCTCTGCGTTTCTAT 386
| || |||||||||||||| || ||||||| ||||||||||
Sbjct 350 TGAA-TTAAATTATTGGATTTTATTGTTTCAAAGCGTTTCTAT 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5