BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475269 Length=1668 Score E Sequences producing significant alignments: (Bits) Value AT1G60610.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1807 0.0 > AT1G60610.1 | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:22327912-22330276 REVERSE LENGTH=1772 Length=1772 Score = 1807 bits (978), Expect = 0.0 Identities = 1162/1249 (93%), Gaps = 20/1249 (2%) Strand=Plus/Plus Query 430 CTGTGATGATGATTTCTTGT-GTGTATGTAGGATCTGAAAGAAGCTTTGGTTTAAttttt 488 ||||||| |||||||||| | | || ||||||||||||| |||||| |||||| ||||| Sbjct 534 CTGTGATAATGATTTCTTTTAG-GTTTGTAGGATCTGAAGGAAGCTACGGTTTATTTTTT 592 Query 489 ttGATGGGCAATCAT-TAAGAGTACTTTACGGG--TATATATACACACAAAACGGTTAAG 545 || |||||||||| | ||| ||| ||||||||| |||||||||||| |||||||||||| Sbjct 593 TTTATGGGCAATC-TCTAACAGTTCTTTACGGGTATATATATACACATAAAACGGTTAAG 651 Query 546 CTCTAGAGAAGATGTTGGGAGGCAACAATGAGAACCCTGTGCCGCAGGTTTTAATGAACG 605 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 652 CTCTAGAGAAGATGTTGGGAGGCAACAATGATAACCCTGTGCCGCAGGTTCTAATGAACG 711 Query 606 ACAGCCAGTTTCAGTATCAAACAAATACATCGTTGAATCAGCTTCACTTGCTTGGGACAA 665 |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | Sbjct 712 ACAGCCAGTTTCGGTATCAATCAAACACATCGTTGAATCAGCTTCACTTGCTTGGGACGA 771 Query 666 TGAGACCTGGTTGTACTATTGATCCCGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 725 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 772 TGAGAGCTGGTTGTACTATTGATCCTGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 831 Query 726 TGATTCGGCATAATAGCAAACGCGAAAGGGAAACCGAAATCAACAATAATATGCAGAGAC 785 |||| |||| |||||||| ||||| ||||||||| |||| |||||||| ||||||||||| Sbjct 832 TGATGCGGCTTAATAGCACACGCGGAAGGGAAACTGAAAACAACAATATTATGCAGAGAC 891 Query 786 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAAC---AATAGTGTTGTTCAAG 842 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 892 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAACAATAATACTGTTGTTCAAG 951 Query 843 ATGAAGTCCCAAAACAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATAACGATGATG 902 ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 952 ATGAAGTCCCAAAGCAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATGATGATGATG 1011 Query 903 AGCGCAACTCTTCTGTAACTTCGGCAAATTTAAGTATCACAACTCCAGTCTTTCAGTCAC 962 |||||||||||||||||||||| |||||| ||| || ||||||||||||| |||||||| Sbjct 1012 AGCGCAACTCTTCTGTAACTTCAGCAAATGGAAGCATAACAACTCCAGTCTATCAGTCAC 1071 Query 963 TCGGTGACAATATCAGATTGGACCTTGATATACAGAAAGAGGAGCTTGATCAGTTTATCA 1022 ||||||||||||||||||||||||| ||| |||||| || ||||||||||||||||||| Sbjct 1072 TCGGTGACAATATCAGATTGGACCTCAATAGACAGAACGACGAGCTTGATCAGTTTATCA 1131 Query 1023 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATAAAACAGAGACATGTCACGT 1082 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1132 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATTAAACAGAGACATGTCACGT 1191 Query 1083 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCAGGAGA 1142 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1192 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCATGAGA 1251 Query 1143 TTGAAAGCATGAACAAGAAGAACCGGGAACTTGTGGATAAGATAAAACAAGTGGCAGTGG 1202 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1252 TTGAAAGCATGAACAAGAAGAACCGGGAACTCGTGGATAAGATAAAACAAGTGGCAGTGG 1311 Query 1203 AAGCTCAGAACTGGCATTACAAAGCAAAGTACAATGAATCTGTGGTTAATGCCTTAAAGG 1262 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1312 AAGCTCAGAACTGGCATTACAAAGCAAAATACAATGAATCTGTGGTTAATGCCTTAAAGG 1371 Query 1263 TAAACTTGCAACAAGTGATGTCGCATGGAAACGACAACAATGC---AGCAGGAGTAGTAG 1319 |||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| | Sbjct 1372 TAAATTTGCAACAAGTGATGTCACATGGAAACGACAACAATGCAGTAGGAGGAGGAGTTG 1431 Query 1320 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAGGCAGCCT 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1432 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAAGCAGCTT 1491 Query 1380 CATACAACTACTTGAACATCCCGGGGATACCAAGTGCTGGGATGAGATGTAAGTCGTGTA 1439 | ||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||| Sbjct 1492 CTTACAATTACTTGAACATCCCGGGGATGCCAAGTACTGGGATGAGATGTAAGTTGTGTA 1551 Query 1440 ACGTAAAGGATGTTTCGGTCTTGCTCGTGCCGTGTAGGCACTTGAGTTTGTGTAAAGACT 1499 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1552 ACGTAAAGAATGTTTCGGTCTTGCTCGTGCCATGTAGGCACTTGAGTTTGTGTAAAGATT 1611 Query 1500 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1671 Query 1560 TCTTCTTCTTCTGAGTTGTCTTCATGCTCTTGAAAAGTTACTGATGGAGAAACATGAACA 1619 ||||||||||||||||||||||||| |||||||||||| | || |||| |||||| Sbjct 1672 TCTTCTTCTTCTGAGTTGTCTTCATACTCTTGAAAAGTAAATGGTGGA------TGAACA 1725 Query 1620 TATTTGTATGtgatgatgatgatgatgatgaAAACTTGCTCGAGTCTTT 1668 ||||||||||||||| || |||||| ||||||||||| |||||||||| Sbjct 1726 TATTTGTATGTGATGGTGGTGATGA--ATGAAAACTTGGTCGAGTCTTT 1772 Score = 390 bits (211), Expect = 2e-107 Identities = 344/403 (85%), Gaps = 29/403 (7%) Strand=Plus/Plus Query 1 AGAAAAAGGACAGAAGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCAC-C-AGAGAG- 57 |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1 AGAAAAAGGACAGAGGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCACACCAGAGAGA 60 Query 58 -G-CACAACTCACGGGGAAAATCAGCAGAACCAATACCACCGCCACCAACTACTATTATT 115 | ||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 61 AGGCACAACTCACGGGGAAA-TCAGCAGAACCAATACCACCGCCACCGGTTACTATTACT 119 Query 116 ATTCTTGTTTTCATCATCACCCAACaaaaaaaaaaa-a-TACTATTTTCGATTGTTTTCT 173 ||||||||| |||||||| ||||| |||||||| | || ||||||||| || || Sbjct 120 ATTCTTGTTATCATCATCTCCCAA-AAAAAAAATGTTAGTATTATTTTCGA--GT---CT 173 Query 174 CTATTTTCAAGAAttt-tttt-ttAT-AATATC--GATTTTGCCACCCAACTTCTCCCAC 228 | |||||||| ||| |||| || | |||||| || |||||||||||||| ||||||| Sbjct 174 AT-TTTTCAAGTTTTTGTTTTGTTTTTAATATCTCGACTTTGCCACCCAACTCCTCCCAC 232 Query 229 TCCTTCACCACTGTGTCCTG-C-T--GCTGCTTTCTCACCTCTCCATCATTCATTTCTTT 284 |||||||| ||||||||||| | | |||| |||||||||| ||||||||||||||| || Sbjct 233 TCCTTCACAACTGTGTCCTGTCCTCTGCTGATTTCTCACCTTTCCATCATTCATTTCATT 292 Query 285 CGttttttttttCTCCCATCCGTTTCGTTTATTCTTCTTTCCCCTTAAATT-AAAATCTT 343 | ||| ||||||| || ||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 293 C-TTTCTTTTTTC-CC-ATCCGTTTCTTTTATTCTTCTTTCTCCTTAAATTTAAAATCTT 349 Query 344 TTAAATTAAATTATTGGATATTGTTGTTTCTCTGCGTTTCTAT 386 | || |||||||||||||| || ||||||| |||||||||| Sbjct 350 TGAA-TTAAATTATTGGATTTTATTGTTTCAAAGCGTTTCTAT 391 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82429294890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5