BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475272
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60600.2 | Symbols: ABC4 | UbiA prenyltransferase family pro... 1845 0.0
> AT1G60600.2 | Symbols: ABC4 | UbiA prenyltransferase family protein
| chr1:22324645-22327359 REVERSE LENGTH=1742
Length=1742
Score = 1845 bits (999), Expect = 0.0
Identities = 1205/1300 (93%), Gaps = 32/1300 (2%)
Strand=Plus/Plus
Query 281 AAGTG-ATTTTGTTATGATTACGTCGTGGGTTTGATCTGATTCTACCTCCGTCGCTGATA 339
||||| ||||||||||||| ||||||||| |||||||||| || || |||||||| ||
Sbjct 335 AAGTGAATTTTGTTATGATCACGTCGTGGTTTTGATCTGACTCCACTTCCGTCGC---TA 391
Query 340 ATGCCCTCTTCGAAAGATTCGTGTTAAAAGGTAAAGTTCCAAACTTGAAAATGATGAATT 399
| | |||||||||||||||||||| ||| |||| |||| |||||||| ||||||
Sbjct 392 A--CTCTCTTCGAAAGATTCGTGTT-AAA---AAAG----AAACCTGAAAATGGTGAATT 441
Query 400 TTGGTTCTCTCTGTGACATAAATTATGGGTTTGTGCCCAAAAAGTCAACTGATTTGTTTG 459
||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 442 TTGTTTCTCTCTGTGACATAAAGTATGGGTTTGTGCCCAAAAATTCAACTGATTTGTTTG 501
Query 460 TGAAACAGAAAATTCAC-A-------AGCAGAGGAGATGGAATCACAAGATTACCGGTGT 511
|||||| |||||||||| | ||||||||||||| |||||| |||||||||||||
Sbjct 502 TGAAACGGAAAATTCACAAGCTTCCCAGCAGAGGAGATGTAATCACTAGATTACCGGTGT 561
Query 512 TTGGTTCAAATGCATGGGTGAATCTGAATGCTAAAACAAGAAGTAACCTTAGAGTTGGGC 571
||||||| |||||| | | |||||||||||||||| ||||||| |||||||||||| |||
Sbjct 562 TTGGTTCGAATGCACGAGAGAATCTGAATGCTAAACCAAGAAGAAACCTTAGAGTTAGGC 621
Query 572 CAATCTTTTGTAAGAGCTATGGAGATACAGCAGAA-GTTTACCAAGAAGAGGAAATTCCC 630
|||||||||||||||| ||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 622 CAATCTTTTGTAAGAGTTATGGAGATGCAGCA-AAGGTTTACCAAGAAGAGGAGATTCCC 680
Query 631 AGAGAAAAATTGATATGGAGAGCAATCAAACTACCCATGTACTCTGTCGCTTTAGTTCCT 690
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 681 AGAGCAAAATTGATATGGAGAGCAATCAAACTACCAATGTACTCTGTCGCTTTAGTTCCT 740
Query 691 CTTACCGTTGGTGCTTCAGCGGCCTATTTAGAGACGGGTTTCTTTC-TAGCTAGACGTTA 749
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 741 CTTACCGTTGGCGCTTCAGCGGCCTATTTAGAGACGGGTTT-GTTCTTAGCTAGACGTTA 799
Query 750 TGTTACAT-TAATGCTCTCATCAATTCTTATCATTACTTGGCTCAACCTAAGTAATGATG 808
|||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 800 TGTTAC-TCTATTGCTCTCATCAATTCTTATCATTACTTGGCTCAACCTAAGCAATGATG 858
Query 809 TTTATGATTTTGATACCGGAGCTGATAAGAACAAAAAGGAATCAGTAGTAAATCTGGTTG 868
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 859 TTTATGATTTTGATACCGGAGCTGATAAGAACAAAATGGAATCAGTAGTAAATCTGGTTG 918
Query 869 GAAGCCGGACAGGAACCTTAGCCGCTGCAATCACATCGCTCGCGCTTGGTGTTTCTGGTC 928
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 919 GAAGCCGGACAGGAACCTTAGCCGCTGCAATCACATCGCTAGCGCTTGGTGTTTCTGGTC 978
Query 929 TAGTTTGGACATCTTTGAATGCAAGTAATATCCGTGCGATACTATTGCTGGCCTCAGCAA 988
||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 979 TAGTTTGGACATCGTTAAATGCAAGTAATATCCGTGCAATACTATTGCTAGCCTCAGCAA 1038
Query 989 TACTCTGCGGCTATGTGTACCAGTGTCCACCATTTCGGTTAAGTTACCAAGGATTAGGAG 1048
||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1039 TACTCTGTGGCTACGTATACCAGTGTCCGCCATTTCGGTTAAGTTACCAAGGATTAGGAG 1098
Query 1049 AGCCTCTATGCTTTGCAGCATTTGGTCCATTTGCTACTACTGCTTTTTATCTACTTCTTG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 AGCCTCTATGCTTTGCAGCATTTGGTCCATTTGCTACTACTGCTTTTTATCTACTTCTTG 1158
Query 1109 GTAGCTCAAGCGAGATGAGGCATCTTCGGTTAAGCGGTAGGGTCCTTTCCTCATCTCTCC 1168
||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||
Sbjct 1159 GTAGCTCAAGCGAGATGAGGCATCTTCCGCTAAGCGGTAGGGTCCTTTCATCATCTGTCC 1218
Query 1169 TTGTTGGTTTTACTACATCTCTCATCCTTTTCTGCAGCCACTTTCATCAGGTGGATGGAG 1228
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1219 TTGTTGGTTTTACTACATCTCTTATCCTTTTCTGCAGCCACTTTCATCAGGTGGATGGAG 1278
Query 1229 ATTTAGCTGTGGGGAAATATTCACCTCTGGTTCGGTTAGGGACTGAAAAAGGAGCTTTTG 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 ATTTAGCTGTGGGGAAATATTCACCTCTGGTTCGGTTAGGGACTGAAAAAGGAGCTTTTG 1338
Query 1289 TTGTGAGATGGGCTATTCGTTTGCTATATTCAATGCTTCTTGTTCTTGGTTTAAGCAGGA 1348
||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1339 TTGTGAGATGGACTATTCGTTTACTATATTCAATGCTTCTTGTTCTTGGTTTAACCAGGA 1398
Query 1349 TTTTGCCACTACCTTGCACACT-GATGTGTTTCCTGACATTACCAATTGGGAATTTGGTT 1407
||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||
Sbjct 1399 TTTTGCCACTACCTTGCAC-CTTGATGTGCTTCCTGACATTACCAGTTGGGAATTTGGTT 1457
Query 1408 TCAAACTATGTCGAAAAGCACCACAAGGAAAATGGGAAGATATTCGTGGCCAAGTATTAC 1467
|||| ||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1458 TCAAGCTACGTTGAAAAGCACCACAAGGATAATGGGAAGATATTCATGGCCAAGTATTAC 1517
Query 1468 TGTGTGAGACTCCACGCATTGTTTGGAGCCGCATTGTCGTTGGGACTAGTTATCGCTCGC 1527
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 1518 TGTGTGAGACTCCACGCCTTGCTTGGAGCCGCATTGTCGTTGGGGCTAGTTATCGCGCGC 1577
Query 1528 TA-AATTTCACTTACCAAACATTTGTTTTTCTCTTTAGCC 1566
|| || | || | ||||||||||||||| |||||||||||
Sbjct 1578 TAGAAAT-CAGTCACCAAACATTTGTTTCTCTCTTTAGCC 1616
Score = 254 bits (137), Expect = 3e-66
Identities = 235/276 (85%), Gaps = 31/276 (11%)
Strand=Plus/Plus
Query 1 ACGTGATTTTATCTTCTAACGA--GAGCTTGTGTTATCCACTTCATCAGCCTCATGTCTC 58
|||||||||||||||| ||||| |||||| ||||||||||||||||| ||| |||||
Sbjct 1 ACGTGATTTTATCTTCCAACGAGGGAGCTTCTGTTATCCACTTCATCA--TTCACGTCTC 58
Query 59 TTCCGCAAAACCCAACATTCAAATTCTTGTCTGAATAAAC-AAATCCAAACATTGGCATT 117
|||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||
Sbjct 59 TTCCGCAAAACCCAACATTCAAATTCTTGTCTGAATAA-CGAAATCCCAACATTTGCATT 117
Query 118 GCATAGATTCCTTCA-AAAGTCCTCTGATTCTGATTCTAGTCACTCAATT---C-TG--- 169
||||||||||||||| ||| |||||||||||||||||| ||||||||||| | ||
Sbjct 118 GCATAGATTCCTTCACAAA-TCCTCTGATTCTGATTCTGGTCACTCAATTTTGCCTGTTT 176
Query 170 A----CATAATT-GGGACACGTTTT-TCTCAGTTTTTGTATAAAGTTCATTGAGTT-G-- 220
| ||||||| ||| ||| |||| ||||||||||||||||| ||||| |||||| |
Sbjct 177 ATTGGCATAATTCGGG-CAC-TTTTCTCTCAGTTTTTGTATAAGGTTCAATGAGTTTGTT 234
Query 221 --GT-C--CTGTGTGCGTTATCTTCTTCAAATTAAG 251
|| | |||||||||||||||||| |||||||||
Sbjct 235 CTGTACTTCTGTGTGCGTTATCTTCTCCAAATTAAG 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475484535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5