BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475282 Length=2525 Score E Sequences producing significant alignments: (Bits) Value AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein ... 4165 0.0 > AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein sorting 34 | chr1:22285572-22290315 REVERSE LENGTH=2790 Length=2790 Score = 4165 bits (2255), Expect = 0.0 Identities = 2409/2484 (97%), Gaps = 7/2484 (0%) Strand=Plus/Plus Query 48 AAAAGCCCTAATTTTGATCCTCT-AA-GTCACACATGGGTGCGAACGAGTTTCGTTTCTT 105 ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||| Sbjct 92 AAAAGCCCTAATTTTGATCGTCTAAATTTCATACATGGGTGCGAACGAGTTTCGTTTCTT 151 Query 106 CCTCTCCTGCGATATCAATTCGCCCGTCACTTTTCGTATAGAGAAGCTTGATGGAAACCT 165 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 152 CCTCTCCTGCGATATCAATTCGCCGGTCACTTTTCGTATCGAGAAGCTTGATGGAAACCT 211 Query 166 CCCCGTCAAGAAATCTTCTGATTCCGGAGTTGTCTCCGTCGCAGAGGAGAAAAAACCAGA 225 ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 212 CCCCGTCAAGAAATCGTCTGATTCGGGAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGA 271 Query 226 GCTTTACATTGAATGTGCATTGTATATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAAC 285 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 272 GCTTTACATTGAGTGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAAC 331 Query 286 AAGATTAAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAA 345 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 AAGATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAA 391 Query 346 ATATCGGGACTTGACTGCCCATTCACAACTTGCGATTACAGTATGGGATGTTTCGTGTGG 405 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 392 ATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAGTATGGGATGTTTCGTGTGG 451 Query 406 TAAAACTGAGGGACTGATTGGTGGGGCAACAGTCCTTCTATTTAACAGCAAGATGCAAAT 465 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 452 CAAAACTGAGGGACTGATTGGTGGGGCAACAGTCCTTCTTTTTAACAGCAAGATGCAAAT 511 Query 466 GAAATCAGGAAAGCAGAAGCTCAGGCTCTGGCAGGGGAAAGAAGCGGATGGTTCATTTCC 525 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 512 GAAATCAGGGAAGCAGAAGCTAAGGCTCTGGCAGGGGAAAGAAGCGGATGGTTCATTTCC 571 Query 526 AACCTCTACTCCTGGAAAGGTTCCACGGCATGAGCGCGGAGAGCTAGAGCGTTTAGAGAA 585 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 572 AACCTCTACTCCTGGAAAGGTTCCACGGCATGAGCGTGGAGAGCTAGAGCGTTTAGAGAA 631 Query 586 GCTCATGAATAAGTATGAGAGGGGGCAGATCCAAAGCATTGATTGGCTGGATCGACTTAT 645 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 632 GCTCATGAATAAGTATGAGAGGGGGCAGATTCAAAGCATAGATTGGCTGGATCGACTTAT 691 Query 646 GTTGAAATCCTTGGATACTATCAAGGATCAAGAAAGCTCCAAACATGGAAGCTCACATCT 705 |||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||||| Sbjct 692 GTTGAAATCCTTGGATACGATTAAGGAGCAAGAAAGCACCAAACATGGAAGCTCACATCT 751 Query 706 GTTCGTGGTTATTGATTTCTGTAGTTTTGAACATCGAGTTGTATTTCAGGAGTCTGGAGC 765 ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 752 GTTTGTGGTCATTGATTTCTGTAGTTTTGAACATCGGGTTGTATTTCAGGAGTCTGGAGC 811 Query 766 CAATTTGTTCATAACTGCCCCAATAGGTTCAACAAATGAATTTGTTACCGTCTGGGATAC 825 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 812 CAATTTGTTCATAACTGCCCCAATAGGTTCAACAAATGAATTTGTTACTGTCTGGGATAC 871 Query 826 AGAACTGGGAAAGACTAATCCTTCAGAGAACAAACAACTAAAGCTGGCAAGGAGCTTGGA 885 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 872 AGAACTGGGAAAGACTAATCCTTCAGAGAACAAGCAACTAAAGCTGGCAAGGAGCTTGGA 931 Query 886 TCGCGGCATTATCGACAGGGATCTAAAGCCAAGTAATATCGAGCGGAAGTCCATACAAAG 945 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 932 TCGTGGCATTATCGACAGGGATCTAAAGCCAAGTAATATCGAGCGGAAATCCATTCAAAG 991 Query 946 AGTTTTGAAATATCCGCCAACAAGGACATTGAGTGGAGATGAAAGACAACTTCTTTGGAA 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 992 AGTTTTGAAATATCCGCCAACAAGGACATTGAGTGGAGATGAAAGACAACTTCTTTGGAA 1051 Query 1006 GTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGCTGTGTGGA 1065 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1052 GTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGTTGTGTGGA 1111 Query 1066 GTGGAGTGATGTTCAGGAAGCAAAGCAAGCAATTCAACTGATGTACAAATGGGAAATGAT 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1112 GTGGAGTGATGTTCAGGAAGCAAAGCAAGCAATTCAACTGATGTACAAATGGGAAATGAT 1171 Query 1126 AGATGTATGTGATGCTTTGGAGCTATTGTCTCCTCTATTTGAGAGTGAAGAGGTTCGAGC 1185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1172 AGATGTATGTGATGCTTTGGAGCTATTGTCTCCTCTATTTGAGAGTGAAGAGGTTCGAGC 1231 Query 1186 TTATGCTGTGAGTGTCCTGGAAAGAGCTGACGATGAAGAGCTTCAATGTTACTTGCTTCA 1245 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1232 TTATGCTGTGAGTGTCCTGGAAAGAGCTGATGATGAAGAGCTTCAGTGTTACTTGCTTCA 1291 Query 1246 ACTGGTTCAGGCTCTCCGTTTTGAACGCTCCGATAGATCTTGTCTTTCTCAATTCCTTGT 1305 ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1292 ACTGGTTCAGGCTCTTCGTTTTGAACGCTCTGATAGATCTTGCCTTTCTCAATTCCTTGT 1351 Query 1306 ACAGCGGGCATTACAGAATATTGAGTTGGCCAGTTTTCTTCGTTGGTATGTTGCTGTGGA 1365 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1352 CCAGAGGGCATTACAGAATATTGAGTTGGCCAGTTTTCTTCGGTGGTATGTTGCTGTGGA 1411 Query 1366 ACTTCATGACCATGTCTATGCCAAGCGATTTTACAGCACATATGAGTTACTTGAGGAGAA 1425 ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| Sbjct 1412 ACTTCATGACCATGTCTATGCCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAA 1471 Query 1426 TATAATCAAGCTGCCACCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAGAGTTT 1485 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1472 TATAATCAAGCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTT 1531 Query 1486 GGTGCGCCAAACAGAATTGACTGCTCAGTTATGTTCCATTACACGAGAAGTGAGGAATGT 1545 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1532 GGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAGTGAGGAATGT 1591 Query 1546 ACGTGGAAACACCCAGaaaaaaaTTGAGAAGCTCAGGCAGCTATTAGGTGGACTCCTTAG 1605 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1592 ACGTGGAAACACCCAGAAAAAAATTGAGAAGCTCAGGCAGCTTTTAGGTGGACTGCTTAG 1651 Query 1606 CGAACTTACCTACTTTGAAGAGCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAA 1665 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1652 CGAACTTACCTACTTCGAAGAGCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAA 1711 Query 1666 GGGGATTGTGGCAGGAGAATCAACACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTAC 1725 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1712 GGGGATTGTGGCAGGAGAATCATCACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTAC 1771 Query 1726 ATTCCGAACACCAGAAGAAGGA--A-GTTGCAAA-TTAATATTTAAGAAGGGAGATGATC 1781 ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||| Sbjct 1772 TTTCCGAACACCAGAAGAAGGAGGAAGTTGCAAACTTA-TATTTAAGAAGGGAGATGATC 1830 Query 1782 TCCGGCAGGACCAACTGGTTGTTCAAATGGTTTGGCTCATGGATAGATTACTTAAGCTGG 1841 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1831 TCCGGCAAGACCAACTGGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGG 1890 Query 1842 AAAATCTTGATCTGTGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGATGAAGGAA 1901 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1891 AAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGA 1950 Query 1902 TGTTGGAATTCATACCATCCCGTTCTTTGGCTCAGATTCTCTCAGAGCACCGAAGCATAA 1961 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1951 TGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGATTCTCTCAGAGCACCGAAGCATAA 2010 Query 1962 CAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCGCCTTTCGGGATAACAGCCACTT 2021 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2011 CAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCACCTTTCGGGATAACAGCCACTT 2070 Query 2022 GTCTGGATACATTTATAAAAAGCTGTGCAGGCTATTCTGTGATCACATATATACTTGGGA 2081 |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 2071 GTCTTGATACATTTATAAAAAGTTGTGCGGGCTATTCTGTGATCACATATATACTTGGCA 2130 Query 2082 TTGGAGACAGACACCTGGACAACCTCCTCCTTACAGATGATGGTCGTCTTTTCCACGTTG 2141 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2131 TTGGAGACAGACACCTGGACAACCTCCTCCTTACAGATGATGGTCGTCTGTTCCACGTTG 2190 Query 2142 ATTTCGCTTTTATTCTCGGTAGAGATCCTAAACCATTCCCTCCACCTATGAAACTCTGCA 2201 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2191 ATTTTGCTTTTATTCTCGGTAGAGATCCTAAACCATTCCCTCCACCTATGAAACTCTGCA 2250 Query 2202 AAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCCT 2261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2251 AAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCCT 2310 Query 2262 ACTGTTGTGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTC 2321 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2311 ACTGTTGCGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTC 2370 Query 2322 ATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCGGAAAAGGGCATTCTCA 2381 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2371 ATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCAGAAAAGGGCATTCTCA 2430 Query 2382 AACTCCAGGAAAAGTTTAGGCTTGACATGGATGACGAAGCATGCATCCATTTCTTTCAAG 2441 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2431 AACTCCAAGAAAAGTTTAGGCTTGACATGGATGATGAAGCATGCATCCATTTCTTTCAAG 2490 Query 2442 ACCTGATTAATGAAAGCGTAAGTGCGCTGTTCCCGCAAATGGTTGAAACCATACACAGAT 2501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2491 ACCTGATTAATGAAAGCGTAAGTGCGCTGTTCCCGCAAATGGTTGAAACCATACACAGAT 2550 Query 2502 GGGCTCAATACTGGCGTTGAACCC 2525 |||||||||||||||||||||||| Sbjct 2551 GGGCTCAATACTGGCGTTGAACCC 2574 Score = 87.9 bits (47), Expect = 4e-16 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 1 ACACATATTTTACGAATTCGAATTTCAAGTTTCCGATTCTCTAAATC 47 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18 ACACATATTTTACGAATTCGAATTTCAAGTTTCCGATTCTCTAAATC 64 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 125317023614 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5