BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475282
Length=2525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein ... 4165 0.0
> AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein
sorting 34 | chr1:22285572-22290315 REVERSE LENGTH=2790
Length=2790
Score = 4165 bits (2255), Expect = 0.0
Identities = 2409/2484 (97%), Gaps = 7/2484 (0%)
Strand=Plus/Plus
Query 48 AAAAGCCCTAATTTTGATCCTCT-AA-GTCACACATGGGTGCGAACGAGTTTCGTTTCTT 105
||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||
Sbjct 92 AAAAGCCCTAATTTTGATCGTCTAAATTTCATACATGGGTGCGAACGAGTTTCGTTTCTT 151
Query 106 CCTCTCCTGCGATATCAATTCGCCCGTCACTTTTCGTATAGAGAAGCTTGATGGAAACCT 165
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 152 CCTCTCCTGCGATATCAATTCGCCGGTCACTTTTCGTATCGAGAAGCTTGATGGAAACCT 211
Query 166 CCCCGTCAAGAAATCTTCTGATTCCGGAGTTGTCTCCGTCGCAGAGGAGAAAAAACCAGA 225
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 212 CCCCGTCAAGAAATCGTCTGATTCGGGAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGA 271
Query 226 GCTTTACATTGAATGTGCATTGTATATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAAC 285
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 272 GCTTTACATTGAGTGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAAC 331
Query 286 AAGATTAAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAA 345
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AAGATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAA 391
Query 346 ATATCGGGACTTGACTGCCCATTCACAACTTGCGATTACAGTATGGGATGTTTCGTGTGG 405
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 ATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAGTATGGGATGTTTCGTGTGG 451
Query 406 TAAAACTGAGGGACTGATTGGTGGGGCAACAGTCCTTCTATTTAACAGCAAGATGCAAAT 465
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 452 CAAAACTGAGGGACTGATTGGTGGGGCAACAGTCCTTCTTTTTAACAGCAAGATGCAAAT 511
Query 466 GAAATCAGGAAAGCAGAAGCTCAGGCTCTGGCAGGGGAAAGAAGCGGATGGTTCATTTCC 525
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 512 GAAATCAGGGAAGCAGAAGCTAAGGCTCTGGCAGGGGAAAGAAGCGGATGGTTCATTTCC 571
Query 526 AACCTCTACTCCTGGAAAGGTTCCACGGCATGAGCGCGGAGAGCTAGAGCGTTTAGAGAA 585
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 572 AACCTCTACTCCTGGAAAGGTTCCACGGCATGAGCGTGGAGAGCTAGAGCGTTTAGAGAA 631
Query 586 GCTCATGAATAAGTATGAGAGGGGGCAGATCCAAAGCATTGATTGGCTGGATCGACTTAT 645
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 632 GCTCATGAATAAGTATGAGAGGGGGCAGATTCAAAGCATAGATTGGCTGGATCGACTTAT 691
Query 646 GTTGAAATCCTTGGATACTATCAAGGATCAAGAAAGCTCCAAACATGGAAGCTCACATCT 705
|||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||
Sbjct 692 GTTGAAATCCTTGGATACGATTAAGGAGCAAGAAAGCACCAAACATGGAAGCTCACATCT 751
Query 706 GTTCGTGGTTATTGATTTCTGTAGTTTTGAACATCGAGTTGTATTTCAGGAGTCTGGAGC 765
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 752 GTTTGTGGTCATTGATTTCTGTAGTTTTGAACATCGGGTTGTATTTCAGGAGTCTGGAGC 811
Query 766 CAATTTGTTCATAACTGCCCCAATAGGTTCAACAAATGAATTTGTTACCGTCTGGGATAC 825
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 812 CAATTTGTTCATAACTGCCCCAATAGGTTCAACAAATGAATTTGTTACTGTCTGGGATAC 871
Query 826 AGAACTGGGAAAGACTAATCCTTCAGAGAACAAACAACTAAAGCTGGCAAGGAGCTTGGA 885
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 872 AGAACTGGGAAAGACTAATCCTTCAGAGAACAAGCAACTAAAGCTGGCAAGGAGCTTGGA 931
Query 886 TCGCGGCATTATCGACAGGGATCTAAAGCCAAGTAATATCGAGCGGAAGTCCATACAAAG 945
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 932 TCGTGGCATTATCGACAGGGATCTAAAGCCAAGTAATATCGAGCGGAAATCCATTCAAAG 991
Query 946 AGTTTTGAAATATCCGCCAACAAGGACATTGAGTGGAGATGAAAGACAACTTCTTTGGAA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGTTTTGAAATATCCGCCAACAAGGACATTGAGTGGAGATGAAAGACAACTTCTTTGGAA 1051
Query 1006 GTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGCTGTGTGGA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1052 GTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGTTGTGTGGA 1111
Query 1066 GTGGAGTGATGTTCAGGAAGCAAAGCAAGCAATTCAACTGATGTACAAATGGGAAATGAT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GTGGAGTGATGTTCAGGAAGCAAAGCAAGCAATTCAACTGATGTACAAATGGGAAATGAT 1171
Query 1126 AGATGTATGTGATGCTTTGGAGCTATTGTCTCCTCTATTTGAGAGTGAAGAGGTTCGAGC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 AGATGTATGTGATGCTTTGGAGCTATTGTCTCCTCTATTTGAGAGTGAAGAGGTTCGAGC 1231
Query 1186 TTATGCTGTGAGTGTCCTGGAAAGAGCTGACGATGAAGAGCTTCAATGTTACTTGCTTCA 1245
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1232 TTATGCTGTGAGTGTCCTGGAAAGAGCTGATGATGAAGAGCTTCAGTGTTACTTGCTTCA 1291
Query 1246 ACTGGTTCAGGCTCTCCGTTTTGAACGCTCCGATAGATCTTGTCTTTCTCAATTCCTTGT 1305
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1292 ACTGGTTCAGGCTCTTCGTTTTGAACGCTCTGATAGATCTTGCCTTTCTCAATTCCTTGT 1351
Query 1306 ACAGCGGGCATTACAGAATATTGAGTTGGCCAGTTTTCTTCGTTGGTATGTTGCTGTGGA 1365
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1352 CCAGAGGGCATTACAGAATATTGAGTTGGCCAGTTTTCTTCGGTGGTATGTTGCTGTGGA 1411
Query 1366 ACTTCATGACCATGTCTATGCCAAGCGATTTTACAGCACATATGAGTTACTTGAGGAGAA 1425
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 1412 ACTTCATGACCATGTCTATGCCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAA 1471
Query 1426 TATAATCAAGCTGCCACCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAGAGTTT 1485
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1472 TATAATCAAGCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTT 1531
Query 1486 GGTGCGCCAAACAGAATTGACTGCTCAGTTATGTTCCATTACACGAGAAGTGAGGAATGT 1545
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAGTGAGGAATGT 1591
Query 1546 ACGTGGAAACACCCAGaaaaaaaTTGAGAAGCTCAGGCAGCTATTAGGTGGACTCCTTAG 1605
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1592 ACGTGGAAACACCCAGAAAAAAATTGAGAAGCTCAGGCAGCTTTTAGGTGGACTGCTTAG 1651
Query 1606 CGAACTTACCTACTTTGAAGAGCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAA 1665
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 CGAACTTACCTACTTCGAAGAGCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAA 1711
Query 1666 GGGGATTGTGGCAGGAGAATCAACACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTAC 1725
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1712 GGGGATTGTGGCAGGAGAATCATCACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTAC 1771
Query 1726 ATTCCGAACACCAGAAGAAGGA--A-GTTGCAAA-TTAATATTTAAGAAGGGAGATGATC 1781
||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||
Sbjct 1772 TTTCCGAACACCAGAAGAAGGAGGAAGTTGCAAACTTA-TATTTAAGAAGGGAGATGATC 1830
Query 1782 TCCGGCAGGACCAACTGGTTGTTCAAATGGTTTGGCTCATGGATAGATTACTTAAGCTGG 1841
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1831 TCCGGCAAGACCAACTGGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGG 1890
Query 1842 AAAATCTTGATCTGTGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGATGAAGGAA 1901
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1891 AAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGA 1950
Query 1902 TGTTGGAATTCATACCATCCCGTTCTTTGGCTCAGATTCTCTCAGAGCACCGAAGCATAA 1961
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 TGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGATTCTCTCAGAGCACCGAAGCATAA 2010
Query 1962 CAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCGCCTTTCGGGATAACAGCCACTT 2021
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2011 CAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCACCTTTCGGGATAACAGCCACTT 2070
Query 2022 GTCTGGATACATTTATAAAAAGCTGTGCAGGCTATTCTGTGATCACATATATACTTGGGA 2081
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 2071 GTCTTGATACATTTATAAAAAGTTGTGCGGGCTATTCTGTGATCACATATATACTTGGCA 2130
Query 2082 TTGGAGACAGACACCTGGACAACCTCCTCCTTACAGATGATGGTCGTCTTTTCCACGTTG 2141
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2131 TTGGAGACAGACACCTGGACAACCTCCTCCTTACAGATGATGGTCGTCTGTTCCACGTTG 2190
Query 2142 ATTTCGCTTTTATTCTCGGTAGAGATCCTAAACCATTCCCTCCACCTATGAAACTCTGCA 2201
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 ATTTTGCTTTTATTCTCGGTAGAGATCCTAAACCATTCCCTCCACCTATGAAACTCTGCA 2250
Query 2202 AAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCCT 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 AAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCCT 2310
Query 2262 ACTGTTGTGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTC 2321
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 ACTGTTGCGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTC 2370
Query 2322 ATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCGGAAAAGGGCATTCTCA 2381
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2371 ATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCAGAAAAGGGCATTCTCA 2430
Query 2382 AACTCCAGGAAAAGTTTAGGCTTGACATGGATGACGAAGCATGCATCCATTTCTTTCAAG 2441
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2431 AACTCCAAGAAAAGTTTAGGCTTGACATGGATGATGAAGCATGCATCCATTTCTTTCAAG 2490
Query 2442 ACCTGATTAATGAAAGCGTAAGTGCGCTGTTCCCGCAAATGGTTGAAACCATACACAGAT 2501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2491 ACCTGATTAATGAAAGCGTAAGTGCGCTGTTCCCGCAAATGGTTGAAACCATACACAGAT 2550
Query 2502 GGGCTCAATACTGGCGTTGAACCC 2525
||||||||||||||||||||||||
Sbjct 2551 GGGCTCAATACTGGCGTTGAACCC 2574
Score = 87.9 bits (47), Expect = 4e-16
Identities = 47/47 (100%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 1 ACACATATTTTACGAATTCGAATTTCAAGTTTCCGATTCTCTAAATC 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 ACACATATTTTACGAATTCGAATTTCAAGTTTCCGATTCTCTAAATC 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125317023614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5