BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475283
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60470.1 | Symbols: AtGolS4, GolS4 | galactinol synthase 4 |... 1986 0.0
AT1G60450.1 | Symbols: AtGolS7, GolS7 | galactinol synthase 7 |... 837 0.0
> AT1G60470.1 | Symbols: AtGolS4, GolS4 | galactinol synthase 4
| chr1:22278975-22280586 REVERSE LENGTH=1343
Length=1343
Score = 1986 bits (1075), Expect = 0.0
Identities = 1226/1299 (94%), Gaps = 9/1299 (1%)
Strand=Plus/Plus
Query 32 CAAATTGTTCATTTACTTCTCAAACACTCAAGAAAACTTTTCAATTATCTTCTCAAAAAC 91
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 47 CAAACTGTTCTTTTACTTCTCAAACACTCAAGAAAACTTTTCAGTTATCTTCT--ATAAC 104
Query 92 CCACCCCAATACTTTTACTTTGCACAAAATGGCCCCTCAGATTCCCGTAAACTCAATCTA 151
| |||||||||||||| |||||| ||||||||||||| ||||| |||||||| | || ||
Sbjct 105 CTACCCCAATACTTTTTCTTTGCTCAAAATGGCCCCTGAGATTTCCGTAAACCCGATGTA 164
Query 152 CTTATCCGAAAAGGCGCATCAAGCACCCCCAAAGAGAGCTTATGTGACGTTTTTGGCAGG 211
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 165 TTTATCCGAAAAGGCGCATCAAGCACCTCCAAGGAGAGCTTATGTGACGTTTTTGGCAGG 224
Query 212 AAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCAAAGGGTTTGCGTAAGGTCAAAAG 271
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 225 AAATGGAGACTACGTGAAGGGAGTGGTGGGACTAGCAAAGGGTTTGCGTAAGGTCAAAAG 284
Query 272 TGCTTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTT 331
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTT 344
Query 332 GAGGTCTCAAGGCTGTATCCTGCGCGAGATCGAGCCTGTTTATCCTCCAGAAAACCAAGT 391
|||||||||||||||| || |||| |||||||| ||||||||||||||||| ||||||||
Sbjct 345 GAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGAACCTGTTTATCCTCCAGACAACCAAGT 404
Query 392 TGAGTTTGCCATGGCTTACTATGTTCTCAACTACTCAAAGCTTCGTATTTGGAACTTTGA 451
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 405 TGAGTTTGCCATGGCTTATTACGTTCTCAACTACTCAAAACTTCGTATTTGGAACTTTGA 464
Query 452 AGAGTACCTCAAGATGATATACCTTGATGCAGATATTCAAGTCTTTGAAAACATCGATGA 511
||||||| |||||||||||||||||| |||||||||||||||||||| || |||||| |
Sbjct 465 AGAGTACAGCAAGATGATATACCTTGACGCAGATATTCAAGTCTTTGACAATATCGATCA 524
Query 512 ACTCTTCGATTTGCCTGATGGGTATTTCCATGCCGTGATGGACTGTTTCTGTGAGAAAAC 571
||||| |||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 525 CCTCTTTGATTTGTCTGATGCATATTTCTATGCCGTGATGGACTGTTTCTGTGAGAAAAC 584
Query 572 ATGGAGCCACTCGCTGCAGTATTCAATTGGGTACTGTCAACAGTGCCCGGATAAGGTCAC 631
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 585 ATGGAGCCACTCGCTGCAGTATTCAATTGGGTATTGTCAACAGTGCCCGGAGAAGGTCAC 644
Query 632 GTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGT 704
Query 692 GTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACC 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACC 764
Query 752 TTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAGAGTGTACAAACCGAT 811
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 765 TTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAAAGTGTACAAACCGAT 824
Query 812 CCCTCTAGTTTACAATCTGGTTCTGGCTATGCTTTGGCGTCACCCAGAGAACGTGGAGCT 871
|||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 825 CCCTTTGGTATACAATCTGGTTTTGGCTATGCTTTGGCGTCACCCGGAGAACGTGGAGCT 884
Query 872 GGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGGTATACAGG 931
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 885 GGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGG 944
Query 932 AGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGT 1004
Query 992 CTATAATGATGAATCTCTCGATTTCAAATCGATAATCCCTGCAGATGCGGAAGAAACCGT 1051
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1005 CTATAATGATGAATCTCTCGATTTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGT 1064
Query 1052 TACAAAATCGAGCATCCTAGCTTCGGTACTCGAACCAGAAATTACCTACTTCCCAGCACC 1111
||||||||| |||||||||||||| || || ||||||||||| |||||||| || || ||
Sbjct 1065 TACAAAATCAAGCATCCTAGCTTCCGTTCTTGAACCAGAAATGACCTACTTTCCTGCTCC 1124
Query 1112 TTCCGCTGCTTGAGATGTCTTACAGGGAAGTGCACAAGACTTGGTGTGTTCCTCTATCTG 1171
||| |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1125 TTCTGCTGCTTGAGATATCTTGCAGGGAAGT-CACAAGACTTGGTGTGTTCCTCTATCTG 1183
Query 1172 TTTTCTTTTGATCTAT--ATACATAGTTTGAAATAGTAT-AAGCAGAAA-TAGAAACCTT 1227
|||||||||||| ||| ||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1184 TTTTCTTTTGATATATGTATACATAGTTTGAAATAGTATTAACCAGAAAATAGAAACCTT 1243
Query 1228 GGTGAGTCCTTTTCTCGACCCGAGAGGTTTTCAAATAGTATTGCTAAAGTGTGTAAGGTG 1287
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1244 GGTGAGTT-TTTTCTCGACCCGAGAGGTTTTCAAATAGTATTGCTAAAGTGTGTAAG-TG 1301
Query 1288 TTAAATTACTAAGGAAATGAAGTATTTGTATTGCTATAT 1326
||||| ||||||||||||||||| |||||||||||||||
Sbjct 1302 TTAAAGTACTAAGGAAATGAAGTGTTTGTATTGCTATAT 1340
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 ACTCACAAGCCAAAGACCAAAGTAACTAAAA 31
|||||||||||||||||||||||||||||||
Sbjct 1 ACTCACAAGCCAAAGACCAAAGTAACTAAAA 31
> AT1G60450.1 | Symbols: AtGolS7, GolS7 | galactinol synthase 7
| chr1:22271226-22273214 REVERSE LENGTH=999
Length=999
Score = 837 bits (453), Expect = 0.0
Identities = 791/954 (83%), Gaps = 23/954 (2%)
Strand=Plus/Plus
Query 184 AGAGAGCTTATGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGAT 243
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AGAGAGCCTACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGAT 115
Query 244 TAGCAAAGGGTTTGCGTAAGGTCAAAAGTGCTTATCCTCTTGTTGTTGCTATGTTACCTG 303
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 116 TAGCAAAGGGTTTGCGGAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTG 175
Query 304 ATGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGTATCCTGCGCGAGATCG 363
|||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||
Sbjct 176 ATGTGCCTGAAGAACATAGAGAGATCTTGAGGTCTCAAGGATGCATTGTGCGTGAGATCG 235
Query 364 AGCCTGTTTATCCTCCAGAAAACCAAGTTG-AGTTTGCCATGGCTTACTATGTTCTCAAC 422
|||||||| |||||||||| | ||||| || | | || | |||||| || || | |||
Sbjct 236 AGCCTGTTCATCCTCCAGATAGCCAAGATGCA-TACGCAAGGGCTTATTACATTATTAAC 294
Query 423 TACTCAAAGCTTCGTATTTGGAACTTTGAAGAGTACCTCAAGATGATATACCTTG-ATGC 481
|||||||| || || |||||||| |||||||||||| ||||||||| ||| ||| | ||
Sbjct 295 TACTCAAAACTGCGAATTTGGAATTTTGAAGAGTACAACAAGATGATCTAC-TTGGACGC 353
Query 482 AGATATTCAAGTCTTTGAAAACATCGATGAACTCTTCGATTTGCCTGATGGGTATTTCCA 541
||||||||||||||||| || |||||||| ||||| ||| ||| ||||| ||||| ||
Sbjct 354 AGATATTCAAGTCTTTGGCAATATCGATGACCTCTTTGATATGCAAGATGGCTATTTACA 413
Query 542 TGCCGTGATGGACT-GTTTCTGTGAGAAAACATGGAGC--CACTCGCTGCAGTATTCAAT 598
|| |||| || | | ||||||||||||||| |||||| ||||| || | || || ||
Sbjct 414 TGGCGTGTTG-AGTTGTTTCTGTGAGAAAATATGGAGTTACACTC-CT-CTCTACTCGAT 470
Query 599 TGGGTACTGTCAACAGTGCCCGGATAAGGTCACGTGGCCAGAAGATATGGAATCTCCACC 658
|| || |||||| | || || || |||||| |||||| | || ||||||||| | ||
Sbjct 471 CGGCTATTGTCAATATTGTCCTGAGAAGGTCGTGTGGCCCGCCGAGATGGAATCTGCTCC 530
Query 659 TCC-TCCTCTGTATTTCAACGCCGGTATGTTTGTGTTTGAGCCTAGTCCTTTGACTTATG 717
||| || || || ||||| |||||||||||||| |||||||||| ||||||||| ||||
Sbjct 531 TCCCTC-TCCATACTTCAATGCCGGTATGTTTGTATTTGAGCCTAATCCTTTGACGTATG 589
Query 718 AGAGTCTCCTTCAGACCCTGGAGATCACACCACCTTCACCGTTTGCAGAACAAGATTTTC 777
||||||||||||||||||| || ||||||| ||| |||| ||||| || ||||||||||
Sbjct 590 AGAGTCTCCTTCAGACCCTCCAGGTCACACCTCCTACACCATTTGCGGAGCAAGATTTTC 649
Query 778 TCAATATGTTCTTTGAGAGAG-TGTACAAACCGATCCCTCTAGTTTACAATCTGGTTCTG 836
||||||||||||||| || || | | |||||| | ||| || ||||| ||| || ||
Sbjct 650 TCAATATGTTCTTTGGGA-AGGTCTTTAAACCGGTATCTCCGGTATACAACCTGATTTTG 708
Query 837 GCTATGCTTTGGCGTCACCCAGAGAACGTGGAGCT-GGAGAAAGTCAAAGTTGTTCACTA 895
|| |||||||||| || || | ||| || || || ||||| |||||||||||||||||
Sbjct 709 TCTGTGCTTTGGCGCCATCCGGGGAAGGTTGA-CTTGGAGAGTGTCAAAGTTGTTCACTA 767
Query 896 CTGTGCAGCTGGATCCAAGCCATGGAGGTATACAGGAGAAGAAGCTAACATGGACAGAGA 955
|||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 768 CTGTCCACCTGGATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGAGA 827
Query 956 AGACATCAAGATGTTAGTTGATAAATGGTGGGATGTCTATAATGATGAATCTCTCGATTT 1015
|||| |||| |||||| || | |||||||||||| |||| ||||| || ||||| |||||
Sbjct 828 AGACGTCAAAATGTTAATTAAGAAATGGTGGGATATCTACAATGACGAGTCTCTTGATTT 887
Query 1016 CAAATCGATAATCCCTGCAGATGCGGAAGAAACCGTTACAAAATCGAGCA-TCCTAGCTT 1074
||| ||| || |||||||||| ||||| ||||||| |||| | || | ||||||
Sbjct 888 TAAACCGAAAAGCCCTGCAGATTTGGAAGCAACCGTTTTGGAATCAA-CAATTATAGCTT 946
Query 1075 CGGTA-CTCGAACCAGAAATTACCTACT-TCC--CAGCACCTTCCGCTGCTTGA 1124
||||| | |||| || | || |||||| ||| | |||||||| || ||||||
Sbjct 947 CGGTAAC-CGAAGCACCACTTTCCTACTCTCCTGCTGCACCTTCTGCCGCTTGA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5