BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475285
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2134 0.0
> AT1G60460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: petal differentiation and expansion
stage, E expanded cotyledon stage, D bilateral stage;
Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22275484-22279007
FORWARD LENGTH=1719
Length=1719
Score = 2134 bits (1155), Expect = 0.0
Identities = 1322/1403 (94%), Gaps = 10/1403 (1%)
Strand=Plus/Plus
Query 1 CTGCCATGGAAACCACCGCTCCGGTTCCAAAGCTTCTTCTACAATTAATATCATCTGCTT 60
|||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 112 CTGCCATGGAAAACAATGCTCCGGTTCCGAAGCTTCTTCTACAATTAATCTCATCTGCTT 171
Query 61 TTCAAAGATGCCGTTTATCAGAAGATCTCTGTAGATTATCAGTTCTTCTTGACCAATCTA 120
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 172 TCCAAAGATGCCGTTTAGCAGAAGATCTCTGTAGATTATCAGTTCTTCTTGACCAATCCA 231
Query 121 -C-AAACAATGATCCTCCGATTTCGTGTATTTCGATTGCGGATACGGGAATTGGATGCAA 178
| ||| | |||||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 232 CCGAAA-GA-GATCCTCCGATTACTTGTATTTCGATTGCCGATACGGGAATTGGATGCAA 289
Query 179 TTTGGAGGAATTTCAGATTTTGAGGTGCCCTAGAGAATTCAATGGAGCCAAGATTTGGGA 238
||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 290 TTTGGAGGAATTTCAGAATTTGAGGTGCCCAAGAGAATTCAATGGAGCGAAGATTTGGGA 349
Query 239 TGGGTTACTCTCCGTCAAAACGACTTGCTTTACTGACGATGAGGTATACTATTATCATAT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGGGTTACTCTCCGTCAAAACGACTTGCTTTACTGACGATGAGGTATACTATTATCATAT 409
Query 299 AAATCTTGATGAGTATATTGCAAACAAACGACTGAAAAGACAACCTTCTCAGGCTAAGAA 358
|||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 410 AAATCTGGATGAGTATATAGCGAACAAAAGACTGAAAAGACAACCTTCTCAGGCTAAGAA 469
Query 359 TGGTGCAAAGTTTAGTGGGACGGAAGTATCCCTGACTGTTTTTGGAAGTATGGATGTTCT 418
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 470 TGGTGCAAAGTTTAGTGGGACTGAAGTATCCCTGAGTGTTTTTGGAAGTATGGATGTTCT 529
Query 419 CGTGGCACCGATAATTGGCTTCTTTCAAAAGGTC-TTCCCTTCT-GTTCTGCATAATGTC 476
||||||||||||||||||||||||||||||| || || |||| | | |||||||
Sbjct 530 CGTGGCACCGATAATTGGCTTCTTTCAAAAGATCATT--GTTCTACAGATACTTAATGTC 587
Query 477 ACAATGGATCTGATGGTTAAACAAGGGGA-TTCTCCTGGTAATCAAACTCAATATGTCTT 535
||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 588 ACATTGGATCTGATGGTTAAACAA-GGGACTTCTCCTGGTAATCAAACTCAATACGTCTT 646
Query 536 TGCAGTGAACGCTGACAAAACTCCATGCTTTACTGCCTCCAATCTTGAACGGTTGAAGTC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TGCAGTGAACGCTGACAAAACTCCATGCTTTACTGCCTCCAATCTTGAACGGTTGAAGTC 706
Query 596 TGGTCTTGAGGACTATGTTTTAAGGCATGGAAACTGTTTGGATACGATGTGTGACTATTG 655
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 707 TGGTCTTGAGGACTATGTTTTAAGGCATGCTAACTGTTTGGATACGATGTGTGACTATTG 766
Query 656 CTTTTCGGATAGAGAGCATCTGAAAGCTGGAAGTGGAACACTATGCCAGGAAGACAAACA 715
||| || |||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 767 CTTCTCTGATAGAGAGCATCTAAAAGTTGGAAGTGGAACAGTATGCCAGGAAGACAAACA 826
Query 716 TAAGAGAGTTGGAGGGACGATGGAAGTGGTGATTGTGATAAGTGACTTGCTAGAGACAAC 775
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 827 TAAGAGAGTTGGAGGGACGATGGAAGTGGTTATTGTGATAAGTGACTTGCTAGAGTCAAC 886
Query 776 TCAGCATTGCAGCAGATCCTGCGATGGAAAAACAGAGGTTTTATACTTTGACAATTTCTC 835
|||||||||||||||||| ||| | || |||||||||||| ||||||||||||||||||
Sbjct 887 TCAGCATTGCAGCAGATCATGCAACGGCAAAACAGAGGTTCTATACTTTGACAATTTCTT 946
Query 836 ACCTTCCCCTGTTCCACATTTGGCCTTGAGCGCATTGAAAAAGATTGACTGGAAAAATTA 895
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 947 ACCTTCCCCTGTTCCACATTTGGCATTGAGCGCATTGAAAAAGATTGACTGGAAAAAATA 1006
Query 896 TGGTTTGATCCTGGCGAATGTGAATGATCAAGATGGACATGTGTTTCTCGAGTGGGAAAA 955
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1007 TGGTTTGATCCTGGCGAATGTGAATGATCAAGACGGACATGTGTTTCTCGAGTGGGACAA 1066
Query 956 TTTCCCTTCTTATGTTCAAATACAAATTTCCCTCCATTGGTATCACAATCAATATCCAGC 1015
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1067 TTTCCCTTCATATGTTCAAATACAAATCGCCCTCCATTGGTATCACAATCAATATCCAAC 1126
Query 1016 AAGACAGAAGAATGGGCCTGGTATAAGTTTTTTGAAGAAAGGAATGAAAAATGCTTTGGA 1075
||| |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||
Sbjct 1127 AAGGCAGAAGAATGGGCCTGGTATAAGTCTTCTGAAGAAGGGAATAAAAAATGCTTTGGA 1186
Query 1076 TAATTTGAAGGCTAAACATGAGGGTTTTCTTCTAAGCTCACATGCTCGTAAGATTTGCAG 1135
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1187 CAATTTGAAGGCTAAACATGAGGGTTTTCTTCTAAGCTCACATTCTCGTAAGATTTGCAG 1246
Query 1136 CTATGTCCCTGACCTTGCAAGATCAATAGCAGGCCTAATATTCTCCTCTACTGATTTGGA 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1247 CTATGTCCCTGACCTTGCAAGATCAATAGCAGGCCTAATATTCTCCTCTACTGACTTAGA 1306
Query 1196 CTTCCAAGGAGATTGCCTATCTGTTCTTGGATTTCAGACTCAAAAAGTTGAACGTGACAC 1255
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1307 CTTCCAAGGAGATTGCCTATCTGTTCTTGGATTTCAGACACAAGAAGTTGAGCGTGACAC 1366
Query 1256 AGTCGAGGACTATATCCAGAGAAAGATCGTGACCGTTATAGGAATGAATGAGAGGAAACC 1315
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1367 AGTCGAGAACTATATCCAGAGAAAGATCGTGACGGTTATAGGAATGAATGAGAGGAAACC 1426
Query 1316 TCAGAAAGACCAAGAAGCTGCTCCTTTTCTGTTTTTTGATGGCGAGTCTGAGACATCATT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1427 CCAGAAAGACCAAGAAGCTGCTCCTTTTCTGTTTTTTGATGGCGAGTCTGAGACGTCGTT 1486
Query 1376 CTTTGAAGATGAGGAAGTAGAAG 1398
|||||||||||||||||||||||
Sbjct 1487 CTTTGAAGATGAGGAAGTAGAAG 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5