BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475288
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60440.1 | Symbols: ATCOAA, ATPANK1, PANK1 | pantothenate ki... 1934 0.0
> AT1G60440.1 | Symbols: ATCOAA, ATPANK1, PANK1 | pantothenate
kinase 1 | chr1:22266497-22269243 REVERSE LENGTH=1481
Length=1481
Score = 1934 bits (1047), Expect = 0.0
Identities = 1214/1292 (94%), Gaps = 21/1292 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCGACTCAAAAAATCTCTCATTTGGCTCTCGACATCGGAGGGACTTTGATAAAG 60
|||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 174 ATGGATCCGACTC---AAATCTCTCATTTGGCTCTCGACATCGGAGGGACTCTGATCAAG 230
Query 61 CTTGTGTATTTCTCGGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTTGTGTATTTCTCTGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTT 290
Query 121 GTTCATGGGAA-GCTTTGTTTCGCCAAGTTTGAGACCAGAAAGATTGATGATTGTTTGGA 179
| | | |||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 291 G-TGAAAGGAAGGCTTTGTTTCGCTAAGTTTGAGACTAGAAAGATTGATGATTGTTTGGA 349
Query 180 GTTTATTCGATTCAATATTCTTCATCATTCCGGTGTTCAGCATCCGAATGGCG-TGGCTC 238
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||| || ||
Sbjct 350 GTTTATTCGATTCAATATCCTTCATCATTCCGGTGTACAGCAACCGAATGGCGAAGG-TC 408
Query 239 TTGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ATGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTA 468
Query 299 AGGAGAAACTTGGAATTCTTTTTGATAAGGAAGATGAGATGCATTCTCTTGTTGGGGGTG 358
||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 469 AGGAGAAACTTGGTATTCTTTTCGATAAGGAAGATGAGATGTGTTCTCTTGTTGGTGGTG 528
Query 359 TTAATTTTCTATTAAAGACAGTCCCAAGGGAAGCTTTTACCTACTTGGATGGCCAGAAGG 418
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 529 TTAATTTTCTACTAAAGACTGTCCCAAGGGAAGCTTTTACCTACTTAGATGGCCAAAAGA 588
Query 419 AGTTTGTCGAGATCGACCATAATGATTTGTACCCATATCTACTTGTTAATATAGGCTCTG 478
||||||||||||||||||||||||||||||| ||||||||||| || || || || ||||
Sbjct 589 AGTTTGTCGAGATCGACCATAATGATTTGTATCCATATCTACTAGTCAACATCGGTTCTG 648
Query 479 GCGTTAGCATGATCAAGGTCGATGGAGATGGAAAGTATGAGCGGATAAGTGGAACAAGCC 538
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 649 GCGTTAGCATGATCAAGGTCGATGGAGATGGAAAATATGAGAGGATAAGTGGAACAAGCC 708
Query 539 TTGGTGGAGGCACATTTTTAGGTCTTGGAAAGCTTTTAACAAAATGCAAGAGTTTTGATG 598
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 709 TTGGCGGAGGCACATTTTTAGGTCTTGGGAAGCTTTTAACAAAATGCAAGAGTTTTGATG 768
Query 599 AGCTGCTAGAGTTAAGTCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATA 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGCTGCTAGAGTTAAGCCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATA 828
Query 659 TCTATGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCT 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TCTACGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCT 888
Query 719 TTGGGAAAGCGATTTCTGATGGCAAAGAACTTGAAGATTACCAGCCAGAAGATGTTGCAA 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 889 TTGGGAAAGCGATTTCTGATGGTAAAGAACTTGAAGATTACCAGCCAGAAGATGTGGCAA 948
Query 779 GGTCCCTTCTACGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCA 838
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GGTCCCTTCTAAGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCA 1008
Query 839 GATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCA 1068
Query 899 TGGACACAATCTCTGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCGAAGGCAATGTTTT 958
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1069 TGGACACAATCTCCGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCAAAGGCAATGTTTT 1128
Query 959 TACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAACAACCAGAGCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1129 TACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAATGACCAGAGCC 1188
Query 1019 ATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTC 1248
Query 1079 ATAACTTACGACACATCCCCGTAACTTCAAATTTAAACGATAGTGAAACCATAGAATGTA 1138
||||||| || |||||||| |||||||||||||||||||| || || |||||||||||||
Sbjct 1249 ATAACTTTCGGCACATCCCAGTAACTTCAAATTTAAACGAAAGCGAGACCATAGAATGTA 1308
Query 1139 GCATCAATTTAGTTTAGTTGGTTATCACCAGTTGTATTGTTATCAATTCAGT--AGAAAT 1196
||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 1309 GCATCAATTTAGTTTAGTT----ATCACCAGTTGTATTATTATCAATTCAGTGTAGAAAT 1364
Query 1197 ATGTGTAAGTTAATTAATTGTTTGAATCAAGAGCTGCG--T-AGTAGTTTGTTGAATGTT 1253
|||| | | ||| || ||||||| ||||||||||| | | ||||||||||||||||
Sbjct 1365 ATGT-T---T-AATCAACTGTTTGAGTCAAGAGCTGCTCATTACTAGTTTGTTGAATGTT 1419
Query 1254 AGACAAATTTATGTAAGATGATTCACGTATTA 1285
||||| ||||||||||||||||||||||||||
Sbjct 1420 AGACACATTTATGTAAGATGATTCACGTATTA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5