BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475291
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60390.1 | Symbols: PG1 | polygalacturonase 1 | chr1:2224747... 3081 0.0
AT1G23760.1 | Symbols: JP630, PG3 | BURP domain-containing prot... 327 2e-88
> AT1G60390.1 | Symbols: PG1 | polygalacturonase 1 | chr1:22247474-22249636
REVERSE LENGTH=2092
Length=2092
Score = 3081 bits (1668), Expect = 0.0
Identities = 1952/2088 (93%), Gaps = 23/2088 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCATAGTGAAGTCTCATTACTCTCTCTTCATCTTATTTCTCCTTCTCAACCAAC 60
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAAATCATAGTGAAATCTCATTACTCTCTCTTCATCTTATTTCTTCTTCTCAACCAAC 60
Query 61 AAATCTCTCTCAACAAGAAGATGAACAATATTGAAGCAACTCTATTCCTCTGCTTCTTCT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCTCTCTCACCAAGAAGATGAACAATATTGAAGCAACTCTATTCCTCTGCTTCTTCT 120
Query 121 TCATCTTCTCATCTTCTCATGTGCATTTCGCCGGAGCTAAGCAAACCGCCGGCAACATTA 180
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 121 GCATCTTCTCATCTTCTAATGTGCATTTCGCCGGAGCTAAACAAACCGCCGGCAACATCA 180
Query 181 CGGCGTCGGAGAATCCATTCACACCAAAAGCTTCTTTGATTCGTTATTGGAACAATCACA 240
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCATCGGAGAATCCATTCACACCAAAAGCTTCTTTGATTCGTTATTGGAACAATCACA 240
Query 241 TCAATGGCGATTCACCAAAACCTTCTTTTTTCCTCTCAAAAGCCTCTCCTTTAACGGCCG 300
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 241 TCAATGGCGATTCACCAAAACCTTCTTTTTTCCTCTCAAAGGCCTCTCCTCTAACCGCCG 300
Query 301 TGGACTCCACGCGGTTCGCCTCACTCGCTTCTACTCACGTGCTTCACACGCGTCACTCCG 360
||||||||||||| ||||||||||||||||||| ||||| |||| |||||| |||||| |
Sbjct 301 TGGACTCCACGCGTTTCGCCTCACTCGCTTCTAATCACGCGCTTAACACGCATCACTCTG 360
Query 361 ATTTCTGCTCCGCCGCGAAACTCTTCTGCTTCCCTGAGCTCGCCAACGCTCATTCTGTCG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 361 ATTTCTGCTCCGCCGCGAAACTCTTCTGCTTCCCTGAGCTCGCC---GCTCATTCCCTGG 417
Query 421 ATAAACACGGCGATGATGTCACCTTCGCCGCTTACAGCGGCAAGAACTTCACAAATTACG 480
| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 418 AAAAACACGGCGATGACGTCAACTTCGCCGCTTACAGCGGCAAGAACTTCACAAACTACG 477
Query 481 GCTCCGACCGTCTCTCCGGAGCTGACTCATTCAAAAACTATTCCGGCGGTGATAACATCG 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 478 GCTCCGACCGTCTCTCCGGAGCAGACTCATTCAAAAACTATTCCGGCGGTGACAACATCG 537
Query 541 CCGTCGACTCGTTCCGACGTTACAGCCGTAACTCTGCCGGACACGACGATGGATTTACAA 600
|||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 538 CCGTAGACTCATTCCGACGTTACAGCCGAAACTCCGCCGGACACGACGATGGATTTACAA 597
Query 601 ATTACGCCGGAGAAGTAAACGTAGCTGACCAAAGCTTCACAACTTACGCCACCGGAACCA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 ATTACGCCGGAGAAGTAAACGTAGCTGACCAAAGCTTCACAACTTACGCCACCGGAACAA 657
Query 661 CCGGAGGCTCTGGCGAATTCACGAGTTACAACACAAACGCAAACGAACCAAACGGAAGAT 720
| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 658 CAGGAGGCTCCGGCGAATTCACGAACTACAACACAGACGCAAACGAACCAAACGGAAGAT 717
Query 721 TCACTTCTTACTCCGATAAAGCCAACGGAAGATCACAGACCTTCACTACCTACTCCGATA 780
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 718 TCACTTCTTACTCCGATAAAGCCAACGGAAGATCACAAACCTTCACTACCTACTCCGAGA 777
Query 781 ACGGCAACACCGGAGATCAATCGTTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGA 840
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 ACGGCAACACCGGATATCAATCATTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGA 837
Query 841 ATGAGTTCTCGGGTTACGGAACCGGGTCAAACGTTGTTATTACGGGTTTTACCAAATACG 900
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 838 ATGAGTTCTCGGGTTACGGAACCGGGTCAAACGTAGTTAATACGGGTTTTACCAAATACG 897
Query 901 GAGAAACCGCTAACGGAGCTAACGACAGTTTCACAAGCTACGGAGAAAACGGGAATGTTC 960
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 898 GAGAATCCGCTAACGGAGCTAACGACAGTTTCACGAGCTACGGAGAAAACGGTAATGTTC 957
Query 961 CGGTTAATGACTTTAAAGGATACGGTGACGGAGGTAACGGCGCCGTTTATGGTTTTAAAA 1020
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 CGGTTAACGAATTTAAAGGATACGGTGACGGAGGTAACGGCGCCGTTTATGGGTTTAAAA 1017
Query 1021 ATTACAGAGACCAATCCAACATCGGAGTTGACTCTTTCTCTTCCTACGCTAAAAACTCAA 1080
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1018 ATTACAGAGACCAATCAAACATCGGAGTTGATTCTTTCTCTTCTTACGCTAAAAACTCAA 1077
Query 1081 ACAACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAACCTCGGCTCTGATAATT 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1078 ACAACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAACCTTGGCTCTGATAATT 1137
Query 1141 TCACCGGTTACGGCCAAGGTAACGTCGGAGGTAACGTCAGCTTTAAAACTTACGGCCAAG 1200
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TCACCGGTTACGGCCAAGATAACGTCGGAGGTAACGTCAGCTTCAAAACTTACGGCCAAG 1197
Query 1201 GACAGAGTTTCAAGGTGTATACTAAAGACGGCGTCGTTTTTGCGCATTATTCTAATAATG 1260
|||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 GACAGAGTTTTAAGGTTTACACTAAAGACGGCGTCGTTTTTGCGCGTTATTCTAATAATG 1257
Query 1261 TGAGTTCCAATGGCAAAACGGTGAATAAATGGGTTGAGGAGGGTAAATTCTTCAGAGAAT 1320
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1258 TGAGTTCTAATGGCAAAACGGTGAATAAGTGGGTTGAGGAGGGTAAATTCTTCAGAGAAG 1317
Query 1321 CGATGTTGAAGGAAGGGACTTTGATGCAACTGCCGGATATTAAAGATAAAATGCCTAAAA 1380
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 CGATGTTGAAAGAAGGGACTTTGATGCAAATGCCGGATATTAAAGATAAAATGCCTAAAA 1377
Query 1381 GGACGTTTTTGCCCCGAAATATAGTTTCGAATTTACCGTTTTCGTCCTCTGA-GATCGGA 1439
|||| ||||| |||||||| |||||| |||||||||||||||||| ||| | |||||||
Sbjct 1378 GGACATTTTTACCCCGAAACATAGTTAAGAATTTACCGTTTTCGTCATCT-ACGATCGGA 1436
Query 1440 GAGATCTGGGGGGTTTTTGGTGCCGGAGAGAATTCGTCGATGGCGGGGATAATCTCGTCG 1499
||||| ||| |||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1437 GAGATTTGGAGGGTTTTTGGTGCCGGTGAGAATTCATCAATGGCGGGGATAATCTCGTCG 1496
Query 1500 GCGGTTTCCGAGTGTGAGAGACCGGCGAGTAAAGGTGAGACGAAGCGGTGCGTTGGATCG 1559
|||||||| ||||||||||||||||||||| | |||||||| |||||||| ||||||||
Sbjct 1497 GCGGTTTCAGAGTGTGAGAGACCGGCGAGTCACGGTGAGACAAAGCGGTGTGTTGGATCA 1556
Query 1560 GCGGAGGATATGATAGATTTCGCTACGTCGGTGCTTGGACGCGGTGTTGTGGTGAGAACC 1619
||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1557 GCGGAGGATATGATAGATTTCGCTACGTCGGTGCTCGGACGCGGCGTAGTGGTGAGGACG 1616
Query 1620 ACGGAGAATGTCGTCGGGTCAAAGAAGAAGATCGTGATCGGAAAAGTCAATGGAATCAAC 1679
||||| ||||| |||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1617 ACGGAAAATGTTGTCGGGTCAAAGAAGAAGGTCGTCATTGGAAAAGTCAATGGAATCAAC 1676
Query 1680 GGTGGAAATGTAACGAGAGCTGTTTCGTGTCACCAGAGTTTATATCCTTATTTACTGTAT 1739
|||||| ||||||| ||||| |||||||||||||||||||| || || ||||||||||||
Sbjct 1677 GGTGGAGATGTAACAAGAGCAGTTTCGTGTCACCAGAGTTTGTACCCGTATTTACTGTAT 1736
Query 1740 TATTGTCACTCGGTTCCTCGGGTACGGGTTTATGAAGCGGATCTACTTGACCCGAAGAGT 1799
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1737 TATTGTCACTCGGTTCCTCGGGTACGTGTTTATGAAACGGATCTACTTGACCCGAAGAGT 1796
Query 1800 TTAGAAAAGATTAACCATGGTGTTGCCATCTGTCATATTGACACGTCAGCTTGGAGTCCG 1859
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1797 TTAGAGAAGATTAACCATGGTGTTGCCATCTGTCACATTGATACGTCAGCTTGGAGTCCG 1856
Query 1860 AGTCATGGAGCATTTTTGGCTTTAGGCTCGGGTCCGGGTCGGATTGAAGTTTGCCATTGG 1919
||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 1857 AGTCATGGAGCGTTTTTGGCTTTAGGTTCTGGTCCGGGTCAGATTGAAGTTTGCCATTGG 1916
Query 1920 ATCTTTGAGAATGATATGACGTGGAATATTATTGATTAAGGTTT---T--T----GGTCA 1970
|||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 1917 ATCTTTGAGAATGATATGACGTGGAATATTATTGATTAAGGTTTAGGTCATTTTTGGCCT 1976
Query 1971 ttt-t--t---tttttttttttAATTTGAGATTTGCTTCATG-GGttttttttttCTTCT 2023
||| | | |||||||||||| ||||||||||||||||| ||||||||| || ||||
Sbjct 1977 TTTGTGGTACATTTTTTTTTTTAGTTTGAGATTTGCTTCATCCGGTTTTTTTATT-TTCT 2035
Query 2024 GCAAAAC-TGTCACTCTCTCCCATTTTGTTGATATATAATATGTTTGA 2070
|||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2036 GCAAAATATGTCACTCTCTCCCATTTTGTTCATATATAATATGTTTGA 2083
> AT1G23760.1 | Symbols: JP630, PG3 | BURP domain-containing protein
| chr1:8402046-8404301 FORWARD LENGTH=2119
Length=2119
Score = 327 bits (177), Expect = 2e-88
Identities = 871/1195 (73%), Gaps = 92/1195 (8%)
Strand=Plus/Plus
Query 789 ACCGGAGATCAATCGTTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGAATGAGTTC 848
||||| | |||||| ||||| || ||| |||||||||| ||||||||||| || ||||||
Sbjct 798 ACCGG-G-TCAATCTTTCACCAGTTACGGCAAAAACGGTAACGGAGCTCCAAACGAGTTC 855
Query 849 TCGGGTTACGGAACCGGGTCAAACGTTGTTATTACGGGT-T--TTAC-CAAA-TACGGAG 903
|| |||||| | || ||| | || | ||| | | || | |||| ||||| |
Sbjct 856 TCTTCTTACGGTGTCTCCTCTAAC---G-TAAT-CGGATCTGATTTCTCAAACTACGGTG 910
Query 904 AAACCGCTAACGGAGCTAACGACAGTTTCACAA-GCTACGGAGAAAACGGGAATGTTCCG 962
||| || ||||| ||| ||||||| ||||| || ||||||| | |||| ||||||||
Sbjct 911 AAAACGGTAACGCAGCCAACGACACTTTCA-AAGGCTACGGTGGTGACGGCAATGTTCCT 969
Query 963 GTTAATGACTTTAAAGGATACGGTGACGGAGGTAACGGC-GCCGTTTA-TGGTT-TTAAA 1019
||| |||| ||| | ||||||| | || ||| || |||||| | ||| ||
Sbjct 970 CAGAATAACTTCAAAAGCTACGGTGCCTCCGGGAAC-GCTGCCGTTGACACGTTCTT--G 1026
Query 1020 AATTACAGAGACCAAT-CCAACATCGGAGTTGACTCTTTCTCTTCCTACGCTAAAAACTC 1078
||||| ||||| |||| | ||| | || | ||| || ||||| || || || || |||||
Sbjct 1027 AATTATAGAGA-CAATGCTAACGTTGGTGATGATTCGTTCTCGTCGTATGCCAAGAACTC 1085
Query 1079 AAACAACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAACCTC-GGCTCTGA-T 1136
|||| ||||||||| |||||||||||||||| |||||| |||||| | || || || |
Sbjct 1086 AAACTTCGAGAAGGTTGATTTCGTAAATTACGGCAAATCTATTAACC-CGGGTTCAGAGT 1144
Query 1137 AATTTCACCGGTTACGGCCAAGGTAACGTCGGA-GGTAACGTCA--GCTTT-AAAAC-T- 1190
||| | ||||| || |||| | | | || || ||| | | ||| ||||| |
Sbjct 1145 CGTTT-AGTGGTTATGGTAAAGG--A-G-CTGAGGGAAACAAAATTGATTTCAAAACGTA 1199
Query 1191 TACGGCCAAGGAC-AGA-GTTTCAAGGTGTATACTAAAGA-CGGCGTCGTTTTTGCGCAT 1247
||| | || || | | ||||||| || || ||| | ||| |||| |||||| |
Sbjct 1200 TAC--TC-AGAACTCTACG-TTCAAGGACTACACGAAA-ACCGGAGTCGAATTTGCG-A- 1252
Query 1248 TATTCTAATAATGTG-AGT-TC--CAATGGCAAAACGGTGAATAAATGGGTTGAGGAGGG 1303
| | ||| | | ||| || |||||||||||| ||||| ||||| ||| ||
Sbjct 1253 -AATATAA-CCGGAGTAGTCTCGGTGGTGGCAAAACGGTAAATAAGTGGGTGGAGCCTGG 1310
Query 1304 TAAATTCTTCAGAGAATCGATG-TTGAAGGAAGGGACTTTGA--TGCAACTGCCGGATAT 1360
|| ||||| ||||| |||||| || || ||||| || |||| || | |||| || ||
Sbjct 1311 CAAGTTCTTTAGAGAGTCGATGCTT-AAAGAAGGTACATTGATTTG-GA-TGCCTGACAT 1367
Query 1361 TAAAGATAAAATGCCTAAAAGGACGTTTTTGCCCCGAAATATAGTTTCGAATTTACCGTT 1420
||| ||||||||||| |||||| ||||| | || || | || || ||||| |||||||
Sbjct 1368 TAAGGATAAAATGCCGAAAAGGTCGTTTCTACCTCGTAGCATTGTCTCGAAACTACCGTT 1427
Query 1421 TTCGT-CCTCTG-AGATCG-GAGAGATCTGGGGGGTTTTTGGTGCCGGA-GAGAATTCGT 1476
||| | | || | | |||| | || ||| | | ||||| | | | || || |||
Sbjct 1428 TTC-TACATC-GAAAATCGCG-GAAATCAAGCGTGTTTTCCACG-CTAACGATAACTCGA 1483
Query 1477 CGATGGCGGGGATAA-T-CTCGTCGGCGGTTTCCGAGTGTGAGAGACCGGCG--AGTAAA 1532
|||||| ||||||| | || | ||||| || |||||||||||| || ||| |
Sbjct 1484 CGATGGAAGGGATAATTACT-G-ATGCGGTAAGGGAATGTGAGAGACCGCCGACAGT-CA 1540
Query 1533 GGTGAGACGAAGCGGTGCGTTGGATCGGCGGAGGATATGATAGATTTCGCTACGTCGGTG 1592
| ||||| || || || || ||||| |||||||||||||| |||||||| || || |||
Sbjct 1541 -GCGAGACTAAACGATGTGTCGGATCAGCGGAGGATATGATCGATTTCGCGACATCTGTG 1599
Query 1593 CTTGGACGCGGTGTTGTGGTGAGAACCACGGAGAATGTCGTCGGGTCAAAGAAG-AAGAT 1651
||||| || |||| || | | || || |||| ||| | ||| |||||| || ||| |
Sbjct 1600 CTTGGTCGAAGTGTGGTACTCCGGACGACAGAGAGTGTAGCCGGATCAAAGGAGAAAG-T 1658
Query 1652 CGTGATCGGAAAAGTCAATGGAATCAACGGTGGAA-ATGTAACGAGAGCTGTTTCGTGTC 1710
| ||||||| ||||||||||||||||||||||||| | || || | | | || |||||||
Sbjct 1659 CATGATCGGTAAAGTCAATGGAATCAACGGTGGAAGA-GTGACAAAATCAGTGTCGTGTC 1717
Query 1711 ACCAGAGTTTATATCCTTATTTACTGTATTATTGTCACTCGGTTCCTCGGGTACGGGTTT 1770
|||| ||||| || ||||| ||||| || || |||||||| || ||| || ||||| |
Sbjct 1718 ACCAAAGTTTGTACCCTTACTTACTCTACTACTGTCACTCTGTGCCTAAAGTTCGGGTGT 1777
Query 1771 ATGAAG-CGGATCTACTT-GA-CCCGAAGAGTTTAGAAAAGATTAACCATGGTGTTGCCA 1827
| | || | ||||| || || ||| |||||| || ||||| ||||||||| |||| |
Sbjct 1778 ACG-AGTCAGATCT-TTTGGATCCC-AAGAGTAAAGCCAAGATCAACCATGGTATTGCTA 1834
Query 1828 TCTGTCATATTGACACGTCAGCTTGGAGTCCGAGTCATGGAGCATT--T-TTGGCTTTAG 1884
| ||||| || ||||| ||||||||| || ||| |||||||| || | || || || |
Sbjct 1835 TATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTTCATGTT-GC-TT-G 1891
Query 1885 GCT-CGGGTCCGGGTCGGATTGAAGTTTGCCATTGGATCTTTGAGAATGATATGA 1938
| | | || || |||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1892 GGTCCCGG-CCAGGTCAGATCGAAGTATGCCATTGGATCTTTGAGAATGATATGA 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5