BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475296
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60240.1 | Symbols: | NAC (No Apical Meristem) domain trans... 737 0.0
> AT1G60240.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr1:22215197-22216030
REVERSE LENGTH=834
Length=834
Score = 737 bits (399), Expect = 0.0
Identities = 492/536 (92%), Gaps = 9/536 (2%)
Strand=Plus/Plus
Query 1 GATGATGAAGTCAAGACGTGACCAATCAATTGAAGATGCAATCGTCGCAAATTATTTGAA 60
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 84 GATGATGAAGTCAAGACGTGAACAATCAATCGAAGAAGCAATCGTCGCAAATTATTTGAA 143
Query 61 GATGATGATCGATAACGTAATCGTTTGGCCTCGTCACTTCCTCCGAAGTC-AAGACGTGT 119
|||||||||||||||||||| |||||||||||| |||||||||||||| | |||||||||
Sbjct 144 GATGATGATCGATAACGTAAACGTTTGGCCTCGCCACTTCCTCCGAAG-CGAAGACGTGT 202
Query 120 ACTGCAAGAATCCATGGACGCTTTTCGTTACTCGAGATCCTATGGTCCTACAAGCCGGAG 179
||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 203 ACTGCAAGAATCCGTGGACGCTTTTCGTTACTAGAGATCCTATAATCCTACACTTCGGAC 262
Query 180 GATACTTCTTCGTTAACCGGAGTGTGAATTCAGGTAAAACCGATGGATGTGAATACGGTT 239
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 263 GATACTTCTTCGTTAATCGGAGTGTGAATTCAGGTTTAACCGATGGATGTGAATACGGTT 322
Query 240 GTTGGAGAATCATTGGTCGTGATAAAGTGATCAAGTCGGTGACGACCGGGAAGATTCTAG 299
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 323 GTTGGAGAATCATCGGTCGTGATAGAGTGATCAAGTCGGTGACGACCGGGAAGATTCTAG 382
Query 300 GGTTAAAGAAGGTTTATAAGTTCTGTAAAACTGA--GGAA-CCGAGATCG-TTTATTAAG 355
|||||||||||||||||||||||||| ||||||| |||| |||| |||| ||| |||||
Sbjct 383 GGTTAAAGAAGGTTTATAAGTTCTGTGAAACTGATCGGAAACCGAAATCGGTTT-TTAAG 441
Query 356 TTCGTGGAAATGGAGAAGAGAAGAGCAAGAGATAAAAGAATCTGGGCGATGGAGGAGTAT 415
||| |||||| |||||||||||||| |||||||| | |||||||||||||||| ||||||
Sbjct 442 TTCTTGGAAAAGGAGAAGAGAAGAGTAAGAGATAGACGAATCTGGGCGATGGAAGAGTAT 501
Query 416 AGGTTTGCAAGTGCGTGGAAACAAGATTACGTGATCTGCAAGATTAGACTTCT-TGATCC 474
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | ||||
Sbjct 502 AGGTTTGCAAGTACGTGGAAACAAGATTACGTGATCTGCAAGATTCGACGTCTGT-ATCC 560
Query 475 ACAGCCATTTGAGTACATGTTGTCTCACCATATTCGAGGTTACTATAAATGAATCA 530
||| |||||||| ||||||||| | || || |||||||||||||||||||||||||
Sbjct 561 ACAACCATTTGACTACATGTTGGCCCAGCACATTCGAGGTTACTATAAATGAATCA 616
Score = 63.9 bits (34), Expect = 2e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 649 CTAGAATTGAAAAGAAAGATTGGTGGAATCGTTT 682
||||||||||||||||||||||||||||||||||
Sbjct 796 CTAGAATTGAAAAGAAAGATTGGTGGAATCGTTT 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5