BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475298
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60220.1 | Symbols: OTS1, ULP1D | UB-like protease 1D | chr1... 2211 0.0
AT1G10570.1 | Symbols: OTS2, ULP1C | Cysteine proteinases super... 647 0.0
> AT1G60220.1 | Symbols: OTS1, ULP1D | UB-like protease 1D | chr1:22208332-22212171
FORWARD LENGTH=2016
Length=2016
Score = 2211 bits (1197), Expect = 0.0
Identities = 1422/1529 (93%), Gaps = 22/1529 (1%)
Strand=Plus/Plus
Query 438 GCAAGGGAA-GACAGACTCAAAAGACACCTCTAAGCAAGGGAATGCAGCCTCGAAAGACA 496
|||||| || | ||| |||||||| |||||| || ||||||||||| ||| |||||||
Sbjct 402 GCAAGGAAATG-CAGTTTCAAAAGATACCTCT-AG--AGGGAATGCAGACTCAAAAGACA 457
Query 497 CCTCTAGACAAGGGAATACAGACTCAAAAGAAGTCTCACGGTCAACATTTTCTGCCTTTT 556
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 458 CCTCTAGACAAGGGAATGCAGATTCAAAAGAAGTCTCACGGTCAACATTTTCTGCGGTTT 517
Query 557 TCAGTAAACCAAAAACAGATACTCAGTCAAAGAAAGCATTTGGTAAAGAACTAGAAGATT 616
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 518 TCAGTAAACCAAAAACGGATTCTCAGTCAAAGAAAGCCTTTGGTAAAGAACTAGAAGATC 577
Query 617 TGGGATGTGAAAGTAAGAAACACAAGGCTGATAGAAAGCCCGTAACAAGGCTGAGCAGCG 676
||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 578 TGGGATGTGAAAGGAGGAAACACAAGGCTGGTAGAAAGCCTGTAACAAGGCTGAGCAACG 637
Query 677 GGTGGCGGTTGTTGTCAGATATAGGGAACGCTGAGCACAGTGAAAAGCAGTTTGATTCTG 736
|||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct 638 GGTGGCGGTTGTTGCCAGATGTAGGGAAAGCTGAGCACAGTGCAAAGCAGTTTGATTCTG 697
Query 737 GATTTAAAGGGTCAAATGGGAATCAGAAATCCAAGGAATCTTATGGAAAGAAAAAGCGCA 796
|| |||||| ||||| |||||| |||||||||||||| ||||||||||||||| || ||
Sbjct 698 GACTTAAAGAATCAAAAGGGAATAAGAAATCCAAGGAACCTTATGGAAAGAAAAGGCCCA 757
Query 797 AGGAAACTTCG----A---TCT-ATT-CT-CTGCT--tgatgatgatgatgatgatgaCA 844
|||| ||||| | ||| ||| | || | |||||||||||||||||||||||
Sbjct 758 TGGAATCTTCGACTTATTCTCTGATTGATGATGATGATGATGATGATGATGATGATGACA 817
Query 845 ACGACCCCATTGGTCATGAAACTCCTAGGGAGTGGTCGTGGCAAGAATCTCCATCAGAAA 904
||||| ||| ||| ||||||||||||||||||||||| ||| || ||||||||||| |||
Sbjct 818 ACGACACCAGTGGCCATGAAACTCCTAGGGAGTGGTCTTGGGAAAAATCTCCATCACAAA 877
Query 905 GTTCAAAGCGCCGTAAGAAATCAGAGGATACAGTGATAAATGTGGATGAAGAAGAACCTC 964
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 878 GTTCAAGGCGCCGTAAGAAATCAGAGGACACAGTGATAAATGTGGATGAAGAAGAAGCTC 937
Query 965 AGCCTTCAACAGTGGCGGAGCAAGCGGTTGAACTGCCTGAAGGCTTACAGGAAGATATAT 1024
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 938 AGCCTTCAACAGTGGCGGAGCAAGCGGCTGAACTGCCTGAAGGCTTACAGGAAGATATAT 997
Query 1025 GCTACCCATCAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCC 1084
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GCTACCCAACAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCC 1057
Query 1085 TTGCGCCTCGAGAATTTCTAACATCACCGGTTATGAATTTCTACATCAGGTTCTTGCAGC 1144
|||| |||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1058 TTGCACCTCGAGAATATCTGACATCGCCGGTTATGAATTTCTACATGAGGTTCTTGCAGC 1117
Query 1145 AGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCATTTCTTCAATACATATTTCT 1204
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1118 AGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCACTTCTTTAATACCTATTTCT 1177
Query 1205 ACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTTTTTGTGA 1264
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1178 ACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTCTTTGTGA 1237
Query 1265 AGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAAGCTTATATTTTCATACCAA 1324
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1238 GGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAGGCTTATATTTTCATACCAA 1297
Query 1325 TACATGAAGATCTTCATTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAAT 1384
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TACATGAAGATCTCCACTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAAT 1357
Query 1385 CGGGGTTGACTATACTTCACCTTGATTCTTTAGGACTTCACTCGAGAAAATCAATTGTTG 1444
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1358 CGGGGTTGACTATACTTCACCTTGATTCTCTAGGACTTCACTCGAGAAAATCAATTGTTG 1417
Query 1445 AAAACGTAAAAAGGTTTCTGAAAGACGAATGGAATTATTTGAATCAAGATGATTATTCCT 1504
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1418 AAAATGTAAAAAGGTTTCTAAAAGACGAATGGAATTATTTGAATCAAGATGACTATTCCT 1477
Query 1505 TGGATCTACCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTG 1564
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TGGATCTGCCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTG 1537
Query 1565 ATATACAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCA 1624
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 TTGTTCAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCA 1597
Query 1625 TTCAACGGTTCATCGAAGAGGCACCTCAAAGGTTGAAAAGGAAAGATCTGAGAATGTTCG 1684
|| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |||||||||
Sbjct 1598 TTAAACGGTTCATTGAAGAGGCGCCTCAAAGGCTGAAAAGGAAAGACCTGGGAATGTTCG 1657
Query 1685 ACAAGAAGTGGTTTAGACCCGATGAAGCTTCTGCTCTGAGAATCAAAATCCGAAACACAC 1744
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1658 ACAAGAAGTGGTTTAGACCCGATGAAGCCTCTGCTCTGAGAATCAAAATCCGAAACACGC 1717
Query 1745 TCATCGAGCTATTCCGTGTCAGTGACCAGACAGACTAAACCAGTACAGATTATGCATCAT 1804
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 1718 TCATCGAGCTATTCCGTGTCAGTGACCAGACAGAGTAAACCAGTACAGATTATGCAGCTT 1777
Query 1805 CCAAATCAAGACATTGCTCACCGCTCTAACAGAGTTCAAGTTTTTGTTCTTGTATAGACT 1864
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 C-AAATCAAGACATTTCTCACCGCTCTAACAGAGTTCAAGTTTTTGTTCTTGTATAGACT 1836
Query 1865 TTAAAGGCAGAAGTAATATTTGGGCCAAAAGTTAAATTAAAAAATGGGTACATACTCCAT 1924
| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1837 T----GGCAGAAGTATTATTTGGGCCAAAAGTTAAATTAAAAAATGGCTACAGACTCCAT 1892
Query 1925 AGGTTGATGTTGTAATCCaaaaaaaaaaa 1953
||||| |||||||||||||||||||||||
Sbjct 1893 AGGTTAATGTTGTAATCCAAAAAAAAAAA 1921
Score = 553 bits (299), Expect = 3e-156
Identities = 437/501 (87%), Gaps = 20/501 (4%)
Strand=Plus/Plus
Query 1 ATGACGAAGAGGAAGAAGGAAGTTGTAGATGTCGATTGTTCCGAGAAGAAAGATTTTGTG 60
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGACGAAGAGGAAGAAGGAAGTAATAGATGTCGATTGCTCCGAGAAGAAAGATTTTGTG 60
Query 61 ATTGATTGGTCTTCAGCCATGGATAAGGAAGAAGAAGTTCCCGAGCTGGAGATTGTTAAT 120
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 ATTGATTGGTCTTCCGCTATGGATAAGGAAGACGAAGTTCCCGAGCTCGAGATTGTTAAT 120
Query 121 ACCACCAAACCTCCGCCGCCGCAAACGCCAACGTTTCTCTCCGACGATCAGACGGATTCT 180
|||||||||||| | || |||| | ||||||||||| ||||||||||||| || ||||||
Sbjct 121 ACCACCAAACCTACTCCTCCGCCACCGCCAACGTTTTTCTCCGACGATCAAACCGATTCT 180
Query 181 CAGATATCTC-TAACCGATCGTGCCCTTGACGAGCAGCTGGAGCGTAGCAAAA-CGAATC 238
| || | ||| |||||||||||| ||| ||||||||||| ||||||| |||| ||| ||
Sbjct 181 CCGAAA-CTCCTAACCGATCGTGACCTCGACGAGCAGCTAGAGCGTAA-AAAAGCGA-TC 237
Query 239 TTGTGACATTAGGTCCGGGTTTACCCGACAAGGGTGAGAGAATCCGACTCAGAATCGTCT 298
|| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 238 CTG--ACATTAGGTCCGGGCTTACCCGACAAGGGTGAGAAAATTCGACTCAAAATCG-CT 294
Query 299 -ACCTTGAAGAAGAGAAGCAGCGTAGGGTTTTAGACCGCTCGAAAATGGAGGTGGACAGA 357
| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 295 GATCTCGAAGAGGAGAAGCAGCGTAGAGTTTTAGAAGGCTCGAAAATGGAGGTGGACAGA 354
Query 358 AGTTCGAAGGTCATGTCTTCGACGAGCTCAGGTTCAGATGTCTTAACACAAGGGAAA-GC 416
||||| |||||| |||||||||| ||||||||||||||||| ||| | ||||| ||| ||
Sbjct 355 AGTTCTAAGGTCGTGTCTTCGACTAGCTCAGGTTCAGATGTTTTACCGCAAGG-AAATGC 413
Query 417 AGCCTCAAAAGAC-CCTTCTAGGCAAGGGAA-GACAGACTCAAAAGACACCTCTA-AGCA 473
|| |||||||| ||| |||| | ||||| | ||||||||||||||||||||| | ||
Sbjct 414 AGTTTCAAAAGATACCT-CTAG--A-GGGAATG-CAGACTCAAAAGACACCTCTAGA-CA 467
Query 474 AGGGAATGCAGCCTCGAAAGA 494
||||||||||| || |||||
Sbjct 468 AGGGAATGCAGATTCAAAAGA 488
> AT1G10570.1 | Symbols: OTS2, ULP1C | Cysteine proteinases superfamily
protein | chr1:3487594-3491277 FORWARD LENGTH=1936
Length=1936
Score = 647 bits (350), Expect = 0.0
Identities = 1020/1331 (77%), Gaps = 95/1331 (7%)
Strand=Plus/Plus
Query 482 CAGCCTCGAAAGACACCTCTAGACAAGGGAATAC-AGACTCAAAAGAAGTCTCACGGTCA 540
||||||| |||||||||||| ||||||||| | | || || ||||| || || ||||||
Sbjct 452 CAGCCTCAAAAGACACCTCTGGACAAGGGACTTCGGGA-TCGAAAGACGTGTCTCGGTCA 510
Query 541 ACATTTTCTGC-CTTTTTCAGT-A-AA-C-CAAAAACAGATACTCAGTCAAAGAAAGC-A 594
|||||| |||| | |||| ||| | || | ||||| || |||| || |||| | |
Sbjct 511 ACATTTGCTGCTCATTTT-AGTGACAATCTCAAAATGGGA-CCTCAACCAGTGAAA-CTA 567
Query 595 TTTGGT-AAAGAACTAGAAGATTTGGGATGTGAAAG-TAAGA-AACACAAGGCTGATAGA 651
|| | | | ||||| ||||||||||| ||| ||| | || || ||| ||| |||||
Sbjct 568 GTTAATGACA-AACTACAAGATTTGGGACGTGGAAGCT-GGATAA-GCAAAGCTAATAGA 624
Query 652 AAGC-CCGTAACAAG-GCTGAGCAGCGGGTGGCGGTTGTTGTC-AGATATAGGGAACGCT 708
| | | ||| || | | | | |||||||| | || | |||| || | || | |
Sbjct 625 GA-CTCAATAA-TAGAGAAAAATAATGTGTGGCGGTCGCTGCCAAGAT-TAAGCAA-G-T 679
Query 709 G--AGCACAGTGAAAAGCAGTTTGATTCTGGA-TTTAAAGGGT-C-AAATGGGAATCAGA 763
| || |||| |||| | ||| ||||| || | | |||| | | ||| ||| ||| ||
Sbjct 680 GTAAGGTCAGTTTAAAGAACTTTTATTCT-GAGTCT-AAGGATCCTAAA-GGGGATC-GA 735
Query 764 A-ATCCAAGGAATCTTATGGAAAGAAAAAGCGC-AAGGAAACTT-CGATCTA-TT-CTCT 818
| | |||| ||| ||||||| ||| ||||| | || ||| ||| | | || || || |
Sbjct 736 AGACCCAATGAAGCTTATGGTAAGGGAAAGC-CAAATGAATCTTCCCCT-TATTTACT-T 792
Query 819 GCTtgatgatgatgatgatgatgaCAACGACCCCATTGGTCATGAAACTCCTAGGGAGTG 878
| | || |||||||||| |||||| || | ||||||| |||||||||| ||| | ||
Sbjct 793 G-TCGACGATGATGATGGCGATGACGACAAAGTCATTGGTTATGAAACTCCCAGGCATTG 851
Query 879 GTCG-TGGCAAGAATCTCCATC-AGAAAGTTCAAAGC-GCCGTAAGAAATCAGAGGATAC 935
| | | ||| ||| ||| | | | ||||| |||| || | ||||||||||| ||||
Sbjct 852 G-AGTTTAAAAGCATCGCCA-CTACAGAGTTC-AAGCTGCAGGAAGAAATCAGATGATAA 908
Query 936 AGTGATAAATGTGGATGAAGAAGAACCTCAGCCTTCAACAGTGGCGGAGCAAGCGGT-TG 994
|||||| ||| |||||||||| ||||||| | || ||| || | ||| |||| | ||
Sbjct 909 AGTGATTAATTTGGATGAAGATGAACCTCTGTCTCCAATGGTAGTAGAGGAAGC-ATGTG 967
Query 995 AACTGCCTGAAGGCTTA-CAGGAAGATATATGCTACCCATCAAG-G----GA-TGAT--- 1044
|||| |||||||| ||| || |||||||| | |||||||||||| | | ||||
Sbjct 968 AACTTCCTGAAGGGTTACCA-GAAGATATTTACTACCCATCAAGTGATCAAAGTGATGGG 1026
Query 1045 CCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTG-AATGCCTTGCGCCTCGAGAATTTCT 1103
| || |||||||||| | ||||||||||| || |||||||| | ||| | |||| |||
Sbjct 1027 CGAGACCTTGTTCAAGTATCTCTTAAAGATC-TGAAATGCCTTTCACCTGGGGAATATCT 1085
Query 1104 AACATCACCGGTTATGAATTTCTACATCAGGTTCTTGCAGCAGCA-GATATCATCATC-G 1161
||||| || ||||| |||||||||||||||| | |||| || || | | | ||| | |
Sbjct 1086 TACATCGCCAGTTATAAATTTCTACATCAGGTACGTGCAACATCACG-TGTTTTCAGCTG 1144
Query 1162 AATCAA-ATCT-CTGCTGATTGTCATTTCTTCAATACATATTTCTACAAGAAGCTCAGTG 1219
|| || | || ||||| ||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1145 -AT-AAGA-CTGCTGCTAATTGTCATTTCTTCAATACGTTTTTCTACAAGAAGCTCACAG 1201
Query 1220 ACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTTTTTGTGAAGTTCAGGCGGTGGT 1279
| |||||| | |||||||| ||||||| |||||| | |||||||||||||||||||||||
Sbjct 1202 AAGCTGTTTCATACAAGGGTAATGACAGGGATGCATATTTTGTGAAGTTCAGGCGGTGGT 1261
Query 1280 GGAAGGGTATTGATCTATT-TCGTAAAGCTTATAT-TTTCATACCAATACATGAAGATCT 1337
|||||||| |||||||||| | ||||| | ||||| ||| ||||||||||||||||||||
Sbjct 1262 GGAAGGGTTTTGATCTATTCT-GTAAATCATATATATTT-ATACCAATACATGAAGATCT 1319
Query 1338 TCATTGGAGCCTT-GTGATAGTTTGCATCCCTGATAAGAAAGATGAATCGGGGTTGACTA 1396
||| |||||| || || ||| |||||||||| || ||| | || |||||||| |||||||
Sbjct 1320 TCACTGGAGC-TTAGTCATAATTTGCATCCCAGACAAGGAGGACGAATCGGGATTGACTA 1378
Query 1397 TACTTCACCTTG-ATTCTTTAGGACTTCACTCGAGAAAATCAATTGTTGAA-AACGTAAA 1454
|| ||||| ||| |||| || ||||||||| | ||||| | ||| || || || || ||
Sbjct 1379 TAATTCAC-TTGGATTCATTGGGACTTCACCCAAGAAATTTGATT-TTCAATAATGTCAA 1436
Query 1455 AAGGTTTCTGAAAGACGAATGGAATTATTTGAATCAAGATGATTATTCC-TTGGATCTAC 1513
||| ||||||| ||| |||||||| ||| | |||||||||| | || |||||| |||
Sbjct 1437 AAGATTTCTGAGAGAGGAATGGAACTATCTAAATCAAGATGCT----CCATTGGATTTAC 1492
Query 1514 CTATCTCAGAAAAAGTATGGAAAAACCT-CCCTCGTAGGATCAGCGAAGCTGATA-TACA 1571
| || |||| ||||||||||| | |||| ||| || ||||| ||||||||| | | ||
Sbjct 1493 CAATTTCAGCAAAAGTATGGAGAGACCTTCCCAA-TATGATCAACGAAGCTGA-AGTGCA 1550
Query 1572 GGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCATTCA-AC 1630
|||||| || ||||| |||||||| || ||||||| |||| ||||||||||||| | ||
Sbjct 1551 GGTTCCACAACAGAAGAACGATTTCGACTGTGGTCTGTTTCTGCTCTTCTTCATA-AGAC 1609
Query 1631 GGTTCATCGAAGAGGCACCTCAAAGGTTGAAAAGGAAAGATCTGAGAATG-TTCGACAAG 1689
| |||||||||||||| ||||||||| ||| | | | ||| ||| |||| ||| |||||
Sbjct 1610 GTTTCATCGAAGAGGCTCCTCAAAGGCTGACATTGCAGGATTTGAAAATGATTC-ACAAG 1668
Query 1690 AAGTGGTTTAGACCCGATGAAGCTTCTGCTCTGAGAATCAAAATCCGAAACACACTCATC 1749
|||||||||| ||| || |||||||| ||| |||| ||||||||| | |||| |||| |
Sbjct 1669 AAGTGGTTTAAACCGGAAGAAGCTTCCGCTTTGAGGATCAAAATCTGGAACATACTCGTT 1728
Query 1750 GAGCTATTCCG 1760
|| ||||||||
Sbjct 1729 GATCTATTCCG 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5