BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475309
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1441 0.0
> AT1G60010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink). | chr1:22095360-22096577 REVERSE LENGTH=965
Length=965
Score = 1441 bits (780), Expect = 0.0
Identities = 891/944 (94%), Gaps = 9/944 (1%)
Strand=Plus/Plus
Query 1 AACTCTTCACGCTGTCCCGAAAGAGActcttctcttctctcttcctctttctttcacaca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1 AACTCTTCACGCTGTCCCGAAAAAGACTCTTCTCTTCTCTCTTCCTCTTTCCTTCACACA 60
Query 61 actctctcattctactctctgttttttttttctttaatcataacatttttttgaagaaca 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCTCTCATTCTACTCTCTG--TTTTTTTTCTTTAATCATAACATTTTTTTGAAGAACA 118
Query 121 gagatt-tttttGTGTGTGTAAGAGATGGGCAATTGTCAAGCGGTTGATGCGGCGGCGTT 179
|||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 119 GAGATTCTTTTTGTTTGTGTAAGAGATGGGAAATTGTCAAGCGGTTGATGCGGCTGCGTT 178
Query 180 GGTTCTACAACATCCTGACGGCAAGATCGATAGATATTACGGTCCTGTATCCGTTAGTGA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGTTCTACAACATCCTGATGGCAAGATCGATAGATATTACGGTCCTGTATCCGTTAGTGA 238
Query 240 GATCATGCGTATGTATCCTGGTCACTACGTTTCTCTTATTATCCCTTTACCAGAGAAGAA 299
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 239 GATCATGCGTATGTATCCTGGTCACTACGTTTCTCTTATTATTCCTTTGCCGGAGAAGAA 298
Query 300 TATTCcgacgacgacgacgacgacgGATGAGAAGACCGAAAGAAGGGTTGTGAGGTTCAC 359
||||||| |||| || || || || ||||| |||| || |||| |||||||||||||||
Sbjct 299 TATTCCGGCGACAACAACAACAACAGATGATAAGAGTGAGAGAAAGGTTGTGAGGTTCAC 358
Query 360 GCGCGTGAAACTTCTCCGACCAACGGAGAGTCTTGTACTTGGTCATGCTTATCGTCTCAT 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 GCGCGTGAAACTTCTCCGACCAACGGAGAATCTTGTACTTGGTCATGCTTATCGTCTCAT 418
Query 420 AACTTCACAAGAGGTTATGAAGGTTTTAAGAGCCAAGAAGTATGCGAAAACAAAGAAACA 479
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 CACTTCACAAGAGGTTATGAAGGTTTTAAGAGCCAAGAAGTACGCGAAAACAAAGAAACA 478
Query 480 TCAAAGTGAAACGAGTAAGGAGAAGAAGAAGCCATCCCCGGAGAAGAAGATTGATGAAGA 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 CCAAAGTGAAACGAGTAAGGAGAAGAAGAAGCCATCATCGGAGAAGAAGATTGATGAAGA 538
Query 540 ATCCGACAAGAATCAGAATCTGGAAACGAAAGATGAGAAGCAACGTTCAGTGTTAACGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCCGACAAGAATCAGAATCTGGAAACGAAAGATGAGAAGCAACGTTCAGTGTTAACGAA 598
Query 600 TTCGGCTTCATCGAGATCAAAAACATGGAGGCCATCATTGCAGAGCATCTCTGAAGCTAC 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCAGCTTCATCGAGATCAAAAACATGGAGGCCATCATTGCAGAGCATCTCTGAAGCTAC 658
Query 660 GAGTTGATGTTTGATTTTTAGCGTGAGGGACAAGAAACATAGTCTCTGTGTGAGA-TCAA 718
||||||||||||| ||||| ||||||||||||||||| ||||||||||||| || |||
Sbjct 659 GAGTTGATGTTTGGGTTTTA-CGTGAGGGACAAGAAACGTAGTCTCTGTGTGTGAATCAT 717
Query 719 TCAGAAGATGGAATCTGAAGAAGAAAGAGAGATAAACATTATTGAATAAACTCTTCTCTT 778
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 718 TCAGAAGATGGAATCTGAAGAAGAAAGAGATATAAACATTATTGAATAAACTCTTCTCTT 777
Query 779 ATGTTCCTTTCTGGTTATTATTTACATAGGAGATGAAAATTTTATAGATTAAGATGTaaa 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGTTCCTTTCTGGTTATAATTTACATAGGAGATGAAAATTTTATAGATTAAGATGTAAA 837
Query 839 aaaaaaaCTCTGCAGAGATTAAGAACTAAGTCCCtttttttGTCCTGTCAATGTATATAT 898
|| || || |||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 838 AAGAA--CTATGCAGAGATTAAGAACTAAGTCCCTTTTTT-GTCCTGTTAATGTATATAT 894
Query 899 GTTCAACATGTGAAGCAATCAATGGaaaaaaaaGAGTGTAAAAA 942
|| | ||||||||| ||||||| |||||| ||| ||||||||
Sbjct 895 GTGCTCCATGTGAAGAAATCAATC-AAAAAATAGATTGTAAAAA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5